RAB39B Gene Set

Dataset CM4AI KOLF21J CRISPRi Gene Perturbation Atlas
Category transcriptomics
Type gene perturbation
Description RAB39B, member RAS oncogene family|This gene encodes a member of the Rab family of proteins. Rab proteins are small GTPases that are involved in vesicular trafficking. Mutations in this gene are associated with X-linked mental retardation. [provided by RefSeq, Aug 2013] (NCBI Entrez Gene Database, 116442)
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Genes

297 genes differentially expressed following the RAB39B gene perturbation from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas.

increased expression

Symbol Name Standardized Value
RAB44 RAB44, member RAS oncogene family 2.86868
PGAM4 phosphoglycerate mutase family member 4 2.86868
FGL1 fibrinogen-like 1 2.86868
CRB1 crumbs family member 1, photoreceptor morphogenesis associated 2.86868
TSGA13 testis specific, 13 2.86868
SOX14 SRY (sex determining region Y)-box 14 2.86868
KRT20 keratin 20, type I 2.86868
CCNB3 cyclin B3 2.86868
RRAD Ras-related associated with diabetes 2.86868
TMEM191B transmembrane protein 191B 2.86868
OR4F17 olfactory receptor, family 4, subfamily F, member 17 2.86868
IZUMO3 IZUMO family member 3 2.86868
GLS2 glutaminase 2 (liver, mitochondrial) 2.86868
FPR2 formyl peptide receptor 2 2.86868
SLC22A10 solute carrier family 22, member 10 2.86868
P2RY6 pyrimidinergic receptor P2Y, G-protein coupled, 6 2.86868
GPR4 G protein-coupled receptor 4 2.86868
LY86 lymphocyte antigen 86 2.86868
ZACN zinc activated ligand-gated ion channel 2.86868
MYBPHL myosin binding protein H-like 2.86868
ALB albumin 2.86868
NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 2.86868
MTTP microsomal triglyceride transfer protein 2.86868
CEP295NL CEP295 N-terminal like 2.86868
NPIPA3 nuclear pore complex interacting protein family, member A3 2.86868
SETSIP SET-like protein 2.86868
NAA11 N(alpha)-acetyltransferase 11, NatA catalytic subunit 2.86868
CRYGB crystallin, gamma B 2.86868
B3GNT8 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 2.86868
AVP arginine vasopressin 2.86868
MRC1 mannose receptor, C type 1 2.86868
TP53TG5 TP53 target 5 2.86868
GYS2 glycogen synthase 2 (liver) 2.86868
PNOC prepronociceptin 2.86868
CPB2 carboxypeptidase B2 (plasma) 2.86868
NLRP10 NLR family, pyrin domain containing 10 2.86868
NEU4 sialidase 4 2.86868
C19ORF67 chromosome 19 open reading frame 67 2.86868
SHCBP1L SHC SH2-domain binding protein 1-like 2.86868
TAL2 T-cell acute lymphocytic leukemia 2 2.86868
SLC23A3 solute carrier family 23, member 3 2.86868
PTGFR prostaglandin F receptor (FP) 2.86868
POSTN periostin, osteoblast specific factor 2.86868
TRPV3 transient receptor potential cation channel, subfamily V, member 3 2.86868
C3ORF22 chromosome 3 open reading frame 22 2.86868
GSTT2 glutathione S-transferase theta 2 (gene/pseudogene) 2.86868
OAS1 2'-5'-oligoadenylate synthetase 1, 40/46kDa 2.86868
FAM240C family with sequence similarity 240 member C 2.86868
ALDOB aldolase B, fructose-bisphosphate 2.86868
GPX6 glutathione peroxidase 6 2.86868
CLDN14 claudin 14 2.86868
HTRA4 HtrA serine peptidase 4 2.86868
PLN phospholamban 2.86868
TCERG1L transcription elongation regulator 1-like 2.86868
SPRR2E small proline-rich protein 2E 2.86868
SPATA31G1 SPATA31 subfamily G member 1 2.86868
CEACAM8 carcinoembryonic antigen-related cell adhesion molecule 8 2.86868
SULT1B1 sulfotransferase family, cytosolic, 1B, member 1 2.86868
SQOR sulfide quinone oxidoreductase 2.86868
CCDC9B coiled-coil domain containing 9B 2.86868
CPNE8-AS1 CPNE8 antisense RNA 1 2.86868
MAP3K4-AS1 MAP3K4 antisense RNA 1 2.86868
TMEM238L transmembrane protein 238 like 2.86868
MARCHF11 membrane associated ring-CH-type finger 11 2.86868
MEIOSIN meiosis initiator 2.86868
GARIN6 golgi associated RAB2 interactor family member 6 2.86868
H2BC3 H2B clustered histone 3 2.86868
CCN6 cellular communication network factor 6 2.86868
CFAP65 cilia and flagella associated protein 65 2.86868
TBC1D3L TBC1 domain family, member 3L 2.86868
APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G 2.86868
CFAP45 cilia and flagella associated protein 45 2.86868
KLRF1 killer cell lectin-like receptor subfamily F, member 1 2.86868
APOBEC1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 2.86868
SLAMF1 signaling lymphocytic activation molecule family member 1 2.86868
TFEC transcription factor EC 2.86868
C10ORF67 chromosome 10 open reading frame 67 2.86868
SLC22A25 solute carrier family 22, member 25 2.86868
MAL mal, T-cell differentiation protein 2.86868
TEX101 testis expressed 101 2.86868
PIWIL1 piwi-like RNA-mediated gene silencing 1 2.86868
ASIC3 acid sensing (proton gated) ion channel 3 2.86868
PRDM7 PR domain containing 7 2.86868
PROX2 prospero homeobox 2 2.86868
IFIT1B interferon-induced protein with tetratricopeptide repeats 1B 2.86868
UGT1A10 UDP glucuronosyltransferase 1 family, polypeptide A10 2.86868
PROZ protein Z, vitamin K-dependent plasma glycoprotein 2.86868
BDKRB2 bradykinin receptor B2 2.86868
FOXC2 forkhead box C2 2.86868
XKR3 XK, Kell blood group complex subunit-related family, member 3 2.86868
ZNF705B zinc finger protein 705B 2.86868
ARL14EPL ADP-ribosylation factor-like 14 effector protein-like 2.86868
CLDN5 claudin 5 2.86868
TNFSF9 tumor necrosis factor (ligand) superfamily, member 9 2.86868
SMIM22 small integral membrane protein 22 2.86868
SLC7A9 solute carrier family 7 (amino acid transporter light chain, bo,+ system), member 9 2.86868
KAZALD1 Kazal-type serine peptidase inhibitor domain 1 2.86868
GOLGA6D golgin A6 family, member D 2.86868
TREH trehalase (brush-border membrane glycoprotein) 2.86868
NPBWR1 neuropeptides B/W receptor 1 2.86868
CDH10 cadherin 10, type 2 (T2-cadherin) 2.86868
HUS1B HUS1 checkpoint homolog b (S. pombe) 2.86868
EMP1 epithelial membrane protein 1 2.86868
APBB1IP amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein 2.86868
KLF2 Kruppel-like factor 2 2.86868
GLOD5 glyoxalase domain containing 5 2.86868
TIGIT T cell immunoreceptor with Ig and ITIM domains 2.86868
PDCL2 phosducin-like 2 2.86868
NACA2 nascent polypeptide-associated complex alpha subunit 2 2.86868
PALMD palmdelphin 2.86868
SHOX2 short stature homeobox 2 2.86868
OPRK1 opioid receptor, kappa 1 2.86868
DYDC1 DPY30 domain containing 1 2.86868
GPR12 G protein-coupled receptor 12 2.86868
C11ORF91 chromosome 11 open reading frame 91 2.86868
SHISA4 shisa family member 4 2.86868
P2RY13 purinergic receptor P2Y, G-protein coupled, 13 2.86868
SOSTDC1 sclerostin domain containing 1 2.86868
UBXN10 UBX domain protein 10 2.86868
LHX3 LIM homeobox 3 2.86868
KCTD16 potassium channel tetramerization domain containing 16 2.86868
C1ORF105 chromosome 1 open reading frame 105 2.86868
EFCAB12 EF-hand calcium binding domain 12 2.86868
KLHDC1 kelch domain containing 1 2.86868
CCDC78 coiled-coil domain containing 78 2.86868
ADRA2A adrenoceptor alpha 2A 2.86868
OR14J1 olfactory receptor, family 14, subfamily J, member 1 2.86868
SYNGR4 synaptogyrin 4 2.86868
LYL1 lymphoblastic leukemia associated hematopoiesis regulator 1 2.86868
VWA7 von Willebrand factor A domain containing 7 2.86868
HRCT1 histidine rich carboxyl terminus 1 2.86868
NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) 2.86868
PLA1A phospholipase A1 member A 2.86868
ZFP92 ZFP92 zinc finger protein 2.86868
KLK4 kallikrein-related peptidase 4 2.86868
LRRC15 leucine rich repeat containing 15 2.86868
NTN5 netrin 5 2.86868
LY6G6C lymphocyte antigen 6 complex, locus G6C 2.86868
CD80 CD80 molecule 2.86868
POU3F3 POU class 3 homeobox 3 2.86868
FUT6 fucosyltransferase 6 (alpha (1,3) fucosyltransferase) 2.86868
ANGPTL3 angiopoietin-like 3 2.86868
ANGPTL6 angiopoietin-like 6 2.86868
MAGEA9B melanoma antigen family A9B 2.86868
HHIPL2 HHIP-like 2 2.86868
TRAF3IP3 TRAF3 interacting protein 3 2.86868
KCTD4 potassium channel tetramerization domain containing 4 2.86868
SSX5 synovial sarcoma, X breakpoint 5 2.86868
ANXA8 annexin A8 2.86868
CYP2C19 cytochrome P450, family 2, subfamily C, polypeptide 19 2.86868
GLRA1 glycine receptor, alpha 1 2.86868
SLC51B solute carrier family 51, beta subunit 2.86868
TUBAL3 tubulin, alpha-like 3 2.86868
OR56B1 olfactory receptor, family 56, subfamily B, member 1 2.86868
ICAM2 intercellular adhesion molecule 2 2.86868
CARD9 caspase recruitment domain family, member 9 2.86868
SLC22A9 solute carrier family 22 (organic anion transporter), member 9 2.86868
ONECUT3 one cut homeobox 3 2.86868
CEACAM16 carcinoembryonic antigen-related cell adhesion molecule 16 2.86868
AGRP agouti related neuropeptide 2.86868
IHH indian hedgehog 2.86868
EPHB3 EPH receptor B3 2.86868
RNASE6 ribonuclease, RNase A family, k6 2.86868
GPR78 G protein-coupled receptor 78 2.86868
SOST sclerostin 2.86868
FAM25G family with sequence similarity 25, member G 2.86868
USP15 ubiquitin specific peptidase 15 2.81692
UPF3B UPF3 regulator of nonsense transcripts homolog B (yeast) 2.76624
MISP3 MISP family member 3 2.76468
HHEX hematopoietically expressed homeobox 2.76468
C3ORF18 chromosome 3 open reading frame 18 2.76468
TMEM139 transmembrane protein 139 2.76468
ATG7 autophagy related 7 2.75093
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 2.74117
ACTN2 actinin, alpha 2 2.74022
ZNF696 zinc finger protein 696 2.71944
TMEM209 transmembrane protein 209 2.59194
FGFRL1 fibroblast growth factor receptor-like 1 2.59134
SNCA synuclein, alpha (non A4 component of amyloid precursor) 2.52957
ZNF141 zinc finger protein 141 2.4642
EPB41L4A erythrocyte membrane protein band 4.1 like 4A 2.4642
CD8B CD8b molecule 2.44838
C1QL2 complement component 1, q subcomponent-like 2 2.44838
C1QL3 complement component 1, q subcomponent-like 3 2.42978
ABRAXAS1 abraxas 1, BRCA1 A complex subunit 2.42978
ERAS ES cell expressed Ras 2.42978
FBXO8 F-box protein 8 2.42843
MIDN midnolin 2.33872
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 2.31237
ZNF621 zinc finger protein 621 2.31116
RNF10 ring finger protein 10 2.28281
ATP6V0C ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c 2.28174
ZNF93 zinc finger protein 93 2.28174
SRSF9 serine/arginine-rich splicing factor 9 2.28174
PIM1 Pim-1 proto-oncogene, serine/threonine kinase 2.27674
RBM7 RNA binding motif protein 7 2.27674
ANKEF1 ankyrin repeat and EF-hand domain containing 1 2.25458
RAD51C RAD51 paralog C 2.24061
PLPP2 phospholipid phosphatase 2 2.20252
LARGE2 LARGE xylosyl- and glucuronyltransferase 2 2.15548
STK26 serine/threonine protein kinase 26 2.15472
RRM1 ribonucleotide reductase M1 2.15472
PKNOX1 PBX/knotted 1 homeobox 1 2.15472
MTA1 metastasis associated 1 2.15472
TM2D2 TM2 domain containing 2 2.1505
LCLAT1 lysocardiolipin acyltransferase 1 2.1505
FXYD1 FXYD domain containing ion transport regulator 1 2.14388
IL1RAP interleukin 1 receptor accessory protein 2.13684
KNSTRN kinetochore-localized astrin/SPAG5 binding protein 2.13002
SF3B5 splicing factor 3b, subunit 5, 10kDa 2.11156
JAZF1 JAZF zinc finger 1 2.11087
CCDC171 coiled-coil domain containing 171 2.09329
CKAP2 cytoskeleton associated protein 2 2.0794
CHMP6 charged multivesicular body protein 6 2.07288
POLR2E polymerase (RNA) II (DNA directed) polypeptide E, 25kDa 2.05274
RPLP0 ribosomal protein, large, P0 2.05076
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 2.01714
CWF19L1 CWF19-like 1, cell cycle control (S. pombe) 2.00857

decreased expression

Symbol Name Standardized Value
ADCY4 adenylate cyclase 4 -2.86868
PODN podocan -2.86868
RUNX3 runt-related transcription factor 3 -2.86868
HPD 4-hydroxyphenylpyruvate dioxygenase -2.86868
ACTA1 actin, alpha 1, skeletal muscle -2.86868
VSTM2A V-set and transmembrane domain containing 2A -2.86868
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -2.86868
MEX3B mex-3 RNA binding family member B -2.86868
FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) -2.86868
ZNF534 zinc finger protein 534 -2.86868
CACNA2D4 calcium channel, voltage-dependent, alpha 2/delta subunit 4 -2.86868
GLUD2 glutamate dehydrogenase 2 -2.86868
FRMPD3 FERM and PDZ domain containing 3 -2.86868
NPPC natriuretic peptide C -2.86868
BAIAP2L2 BAI1-associated protein 2-like 2 -2.86868
FGF4 fibroblast growth factor 4 -2.86868
TRIM11 tripartite motif containing 11 -2.86868
FAM216B family with sequence similarity 216, member B -2.86868
HIST1H2BF histone cluster 1, H2bf -2.86868
KCNA7 potassium channel, voltage gated shaker related subfamily A, member 7 -2.86868
ARSD arylsulfatase D -2.86868
GADL1 glutamate decarboxylase-like 1 -2.86868
CCN3 cellular communication network factor 3 -2.86868
DRP2 dystrophin related protein 2 -2.86868
NUDT3 nudix (nucleoside diphosphate linked moiety X)-type motif 3 -2.86868
CFP complement factor properdin -2.86868
CISH cytokine inducible SH2-containing protein -2.86868
NR4A3 nuclear receptor subfamily 4, group A, member 3 -2.86868
AVIL advillin -2.86868
PABPC1L2B poly(A) binding protein, cytoplasmic 1-like 2B -2.86868
ZNF253 zinc finger protein 253 -2.75835
LAG3 lymphocyte-activation gene 3 -2.75093
SCML1 sex comb on midleg-like 1 (Drosophila) -2.75093
SH2D5 SH2 domain containing 5 -2.75093
UGT3A2 UDP glycosyltransferase 3 family, polypeptide A2 -2.7132
SPTLC3 serine palmitoyltransferase, long chain base subunit 3 -2.59194
FBXO15 F-box protein 15 -2.57906
SSUH2 ssu-2 homolog (C. elegans) -2.57906
TRHR thyrotropin-releasing hormone receptor -2.44838
ZNF491 zinc finger protein 491 -2.44838
RAB5A RAB5A, member RAS oncogene family -2.40607
FARS2 phenylalanyl-tRNA synthetase 2, mitochondrial -2.40511
MRPL32 mitochondrial ribosomal protein L32 -2.39528
ZBTB34 zinc finger and BTB domain containing 34 -2.39528
MRPL41 mitochondrial ribosomal protein L41 -2.39127
SRP54 signal recognition particle 54kDa -2.38954
ANKRD9 ankyrin repeat domain 9 -2.36254
TBCCD1 TBCC domain containing 1 -2.34325
CWC22 CWC22 spliceosome-associated protein -2.34325
GUF1 GUF1 GTPase homolog (S. cerevisiae) -2.32693
PCDH11X protocadherin 11 X-linked -2.32691
NUMB numb homolog (Drosophila) -2.30867
RAB8B RAB8B, member RAS oncogene family -2.28174
KCTD17 potassium channel tetramerization domain containing 17 -2.24556
C17ORF100 chromosome 17 open reading frame 100 -2.24061
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 -2.22764
PCSK9 proprotein convertase subtilisin/kexin type 9 -2.21182
SYT2 synaptotagmin II -2.21182
CCL2 chemokine (C-C motif) ligand 2 -2.16204
IGSF10 immunoglobulin superfamily, member 10 -2.16204
BARX1 BARX homeobox 1 -2.16204
DNAH7 dynein, axonemal, heavy chain 7 -2.16204
TNRC6A trinucleotide repeat containing 6A -2.15548
GFRA3 GDNF family receptor alpha 3 -2.15472
HES3 hes family bHLH transcription factor 3 -2.15472
KLK1 kallikrein 1 -2.14698
POC1B-DUSP6 POC1B-DUSP6 readthrough -2.14449
NOVA2 neuro-oncological ventral antigen 2 -2.13042
KAT7 K(lysine) acetyltransferase 7 -2.09329
BCL7C B-cell CLL/lymphoma 7C -2.08327
R3HDM2 R3H domain containing 2 -2.07706
PICK1 protein interacting with PRKCA 1 -2.05076
KLHL26 kelch-like family member 26 -2.03635
TIMM44 translocase of inner mitochondrial membrane 44 homolog (yeast) -2.03239
PTPN1 protein tyrosine phosphatase, non-receptor type 1 -2.02714
SLC14A1 solute carrier family 14 (urea transporter), member 1 (Kidd blood group) -2.02001
RAB39B RAB39B, member RAS oncogene family -2.0199
COL1A2 collagen, type I, alpha 2 -2.01714
ALG2 ALG2, alpha-1,3/1,6-mannosyltransferase -2.00857