RERF-GC-1B Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from stomach (Cancer Cell Line Encyclopedia)
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Genes

286 genes with high or low copy number in RERF-GC-1B relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
GRK5 G protein-coupled receptor kinase 5 4.51153
PRLHR prolactin releasing hormone receptor 4.51153
VAX1 ventral anterior homeobox 1 4.51153
RAB11FIP2 RAB11 family interacting protein 2 (class I) 4.51153
ATRNL1 attractin-like 1 4.51153
OAT ornithine aminotransferase 4.51153
GUCY2GP guanylate cyclase 2G, pseudogene 4.51153
KCNK18 potassium channel, two pore domain subfamily K, member 18 4.51153
GPAM glycerol-3-phosphate acyltransferase, mitochondrial 4.51153
NKX1-2 NK1 homeobox 2 4.51153
SFXN4 sideroflexin 4 4.51153
ZDHHC6 zinc finger, DHHC-type containing 6 4.51153
GFRA1 GDNF family receptor alpha 1 4.51153
CASC2 cancer susceptibility candidate 2 (non-protein coding) 4.51153
NANOS1 nanos homolog 1 (Drosophila) 4.51153
PDZD8 PDZ domain containing 8 4.51153
RGS10 regulator of G-protein signaling 10 4.51153
EMX2OS EMX2 opposite strand/antisense RNA 4.51153
EMX2 empty spiracles homeobox 2 4.51153
MIR4681 microRNA 4681 4.51153
BAG3 BCL2-associated athanogene 3 4.51153
MIR3663 microRNA 3663 4.51153
TECTB tectorin beta 4.51153
VTI1A vesicle transport through interaction with t-SNAREs 1A 4.51153
EIF3A eukaryotic translation initiation factor 3, subunit A 4.51153
INPP5F inositol polyphosphate-5-phosphatase F 4.51153
FAM204A family with sequence similarity 204, member A 4.51153
LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 4.51153
ACSL5 acyl-CoA synthetase long-chain family member 5 4.51153
SNORA19 small nucleolar RNA, H/ACA box 19 4.51153
ENO4 enolase family member 4 4.51153
TIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 1 4.51153
SLC18A2 solute carrier family 18 (vesicular monoamine transporter), member 2 4.51153
KIAA1598 4.51153
CACUL1 CDK2-associated, cullin domain 1 4.51153
PRDX3 peroxiredoxin 3 4.51153
HSPA12A heat shock 70kDa protein 12A 4.51153
CHST15 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 4.51153
CCDC172 coiled-coil domain containing 172 4.51153
ALCAM activated leukocyte cell adhesion molecule 3.12177
CBLB Cbl proto-oncogene B, E3 ubiquitin protein ligase 3.12177
CPXM2 carboxypeptidase X (M14 family), member 2 3.12177
GPR26 G protein-coupled receptor 26 3.12177
GRIP2 glutamate receptor interacting protein 2 2.93899
SETD5 SET domain containing 5 2.93899
OXTR oxytocin receptor 2.93899
SSUH2 ssu-2 homolog (C. elegans) 2.93899
FAM194C family with sequence similarity 149 member C 2.93899
LMCD1 LIM and cysteine-rich domains 1 2.93899
CAV3 caveolin 3 2.93899
XPC xeroderma pigmentosum, complementation group C 2.93899
LHFPL4 lipoma HMGIC fusion partner-like 4 2.93899
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 2.93899
SRGAP3-AS3 SRGAP3 antisense RNA 3 2.93899
THUMPD3 THUMP domain containing 3 2.93899
LINC00312 long intergenic non-protein coding RNA 312 2.93899
CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 2.93899
SRGAP3 SLIT-ROBO Rho GTPase activating protein 3 2.93899
LMCD1-AS1 LMCD1 antisense RNA 1 (head to head) 2.93899
TAMM41 TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) 2.93899
TMEM43 transmembrane protein 43 2.93899
FGD5 FYVE, RhoGEF and PH domain containing 5 2.93899
CCDC174 coiled-coil domain containing 174 2.93899
LSM3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) 2.93899
EMC3 ER membrane protein complex subunit 3 2.76305
FGD5P1 FYVE, RhoGEF and PH domain containing 5 pseudogene 1 2.76305
GHRLOS ghrelin opposite strand/antisense RNA 2.76305
CAND2 cullin-associated and neddylation-dissociated 2 (putative) 2.76305
BRPF1 bromodomain and PHD finger containing, 1 2.76305
MTMR14 myotubularin related protein 14 2.76305
FAM133CP family with sequence similarity 133, member A pseudogene 2.76305
TTLL3 tubulin tyrosine ligase-like family member 3 2.76305
TPRXL tetra-peptide repeat homeobox-like 2.76305
SLC6A1-AS1 SLC6A1 antisense RNA 1 2.76305
TMEM40 transmembrane protein 40 2.76305
FANCD2OS FANCD2 opposite strand 2.76305
CRELD1 cysteine-rich with EGF-like domains 1 2.76305
LINC00620 long intergenic non-protein coding RNA 620 2.76305
ATP2B2 ATPase, Ca++ transporting, plasma membrane 2 2.76305
ARPC4-TTLL3 ARPC4-TTLL3 readthrough 2.76305
IRAK2 interleukin-1 receptor-associated kinase 2 2.76305
BRK1 BRICK1, SCAR/WAVE actin-nucleating complex subunit 2.76305
OGG1 8-oxoguanine DNA glycosylase 2.76305
GHRL ghrelin/obestatin prepropeptide 2.76305
CAMK1 calcium/calmodulin-dependent protein kinase I 2.76305
BICC1 BicC family RNA binding protein 1 2.76305
SLC6A1 solute carrier family 6 (neurotransmitter transporter), member 1 2.76305
IL17RE interleukin 17 receptor E 2.76305
IL17RC interleukin 17 receptor C 2.76305
FANCD2 Fanconi anemia, complementation group D2 2.76305
HRH1 histamine receptor H1 2.76305
CISD1 CDGSH iron sulfur domain 1 2.76305
TATDN2 TatD DNase domain containing 2 2.76305
RPUSD3 RNA pseudouridylate synthase domain containing 3 2.76305
RPL32 ribosomal protein L32 2.76305
PRRT3 proline-rich transmembrane protein 3 2.76305
JAGN1 jagunal homolog 1 (Drosophila) 2.76305
LINC00852 long intergenic non-protein coding RNA 852 2.76305
CPNE9 copine family member IX 2.76305
FBLN2 fibulin 2 2.76305
SEC13 SEC13 homolog (S. cerevisiae) 2.76305
MIR885 microRNA 885 2.76305
LOC401052 uncharacterized LOC401052 2.76305
TFAM transcription factor A, mitochondrial 2.76305
CIDEC cell death-inducing DFFA-like effector c 2.76305
SLC6A11 solute carrier family 6 (neurotransmitter transporter), member 11 2.76305
PRRT3-AS1 PRRT3 antisense RNA 1 2.76305
UBE2D1 ubiquitin-conjugating enzyme E2D 1 2.76305
VHL von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase 2.76305
TADA3 transcriptional adaptor 3 2.76305
ARPC4 actin related protein 2/3 complex, subunit 4, 20kDa 2.76305
WNT7A wingless-type MMTV integration site family, member 7A 2.76305
HDAC11 histone deacetylase 11 2.76305
CIDECP cell death-inducing DFFA-like effector c pseudogene 2.76305
NUP210 nucleoporin 210kDa 2.76305
ACTR5 ARP5 actin-related protein 5 homolog (yeast) 2.64759
THNSL1 threonine synthase-like 1 (S. cerevisiae) 2.64759
TIMP4 TIMP metallopeptidase inhibitor 4 2.64759
PHYHIPL phytanoyl-CoA 2-hydroxylase interacting protein-like 2.64759
FAM13C family with sequence similarity 13, member C 2.64759
RAF1 Raf-1 proto-oncogene, serine/threonine kinase 2.64759
TSEN2 TSEN2 tRNA splicing endonuclease subunit 2.64759
PPP1R16B protein phosphatase 1, regulatory subunit 16B 2.64759
MKRN2 makorin ring finger protein 2 2.64759
SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1 2.64759
JMJD1C-AS1 JMJD1C antisense RNA 1 2.64759
SYN2 synapsin II 2.64759
MIR548AV microRNA 548av 2.59653
MRLN myoregulin 2.59653
MIR1296 microRNA 1296 2.59653
PLCG1 phospholipase C, gamma 1 2.59653
ZHX3 zinc fingers and homeoboxes 3 2.59653
PPARG peroxisome proliferator-activated receptor gamma 2.59653
TMEM26 transmembrane protein 26 2.59653
NRBF2 nuclear receptor binding factor 2 2.59653
SLC16A9 solute carrier family 16, member 9 2.59653
ARHGAP21 Rho GTPase activating protein 21 2.59653
CCDC6 coiled-coil domain containing 6 2.59653
PRTFDC1 phosphoribosyl transferase domain containing 1 2.59653
RTKN2 rhotekin 2 2.59653
LINC01553 long intergenic non-protein coding RNA 1553 2.59653
RHOBTB1 Rho-related BTB domain containing 1 2.59653
CDK1 cyclin-dependent kinase 1 2.59653
EMILIN3 elastin microfibril interfacer 3 2.59653
ENKUR enkurin, TRPC channel interacting protein 2.59653
C10ORF107 chromosome 10 open reading frame 107 2.59653
LPIN3 lipin 3 2.59653
GPR158-AS1 GPR158 antisense RNA 1 2.59653
JMJD1C jumonji domain containing 1C 2.59653
ARID5B AT rich interactive domain 5B (MRF1-like) 2.59653
TTI1 TELO2 interacting protein 1 2.49065
OTUD1 OTU deubiquitinase 1 2.49065
TOP1 topoisomerase (DNA) I 2.49065
MAFB v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B 2.49065
ARHGAP40 Rho GTPase activating protein 40 2.49065
VSTM2L V-set and transmembrane domain containing 2 like 2.49065
EGR2 early growth response 2 2.49065
ZNF365 zinc finger protein 365 2.49065
ADIG adipogenin 2.49065
ANK3 ankyrin 3, node of Ranvier (ankyrin G) 2.49065
ADO 2-aminoethanethiol (cysteamine) dioxygenase 2.49065
TGM2 transglutaminase 2 2.44392
CHD6 chromodomain helicase DNA binding protein 6 2.44392
RPRD1B regulation of nuclear pre-mRNA domain containing 1B 2.44392
LOC100287792 uncharacterized LOC100287792 2.44392
CTNNBL1 catenin, beta like 1 2.44392
RALGAPB Ral GTPase activating protein, beta subunit (non-catalytic) 2.41451
SNORA71C small nucleolar RNA, H/ACA box 71C 2.41451
BPI bactericidal/permeability-increasing protein 2.41451
SNORA71B small nucleolar RNA, H/ACA box 71B 2.41451
SNHG11 small nucleolar RNA host gene 11 2.41451
SNORA71D small nucleolar RNA, H/ACA box 71D 2.41451
KIAA1755 KIAA1755 2.41451
LINC00489 long intergenic non-protein coding RNA 489 2.41451
SNORA71A small nucleolar RNA, H/ACA box 71A 2.41451
SNHG17 small nucleolar RNA host gene 17 2.41451
LBP lipopolysaccharide binding protein 2.41451
PGM2L1 phosphoglucomutase 2-like 1 2.39327
SLPI secretory leukocyte peptidase inhibitor 2.36889
PTPRT protein tyrosine phosphatase, receptor type, T 2.36889
BLCAP bladder cancer associated protein 2.36889
NNAT neuronatin 2.36889
PI3 peptidase inhibitor 3, skin-derived 2.35236
SEMG1 semenogelin I 2.35236
WFDC5 WAP four-disulfide core domain 5 2.35236
KCNS1 potassium voltage-gated channel, modifier subfamily S, member 1 2.35236
SEMG2 semenogelin II 2.35236
STK4-AS1 STK4 antisense RNA 1 (head to head) 2.35236
LIPT2 lipoyl(octanoyl) transferase 2 (putative) 2.35236
STK4 serine/threonine kinase 4 2.35236
KCNE3 potassium channel, voltage gated subfamily E regulatory beta subunit 3 2.35236
POLD3 polymerase (DNA-directed), delta 3, accessory subunit 2.35236
SCARNA15 small Cajal body-specific RNA 15 2.35236
WFDC12 WAP four-disulfide core domain 12 2.35236
L3MBTL1 l(3)mbt-like 1 (Drosophila) 2.3178
SRSF6 serine/arginine-rich splicing factor 6 2.3178
TOMM34 translocase of outer mitochondrial membrane 34 2.3178
SGK2 serum/glucocorticoid regulated kinase 2 2.3178
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 2.30944
OSER1-AS1 OSER1 antisense RNA 1 (head to head) 2.30944
R3HDML R3H domain containing-like 2.30944
JPH2 junctophilin 2 2.30944
PABPC1L poly(A) binding protein, cytoplasmic 1-like 2.30944
RIMS4 regulating synaptic membrane exocytosis 4 2.30944
KCNK15 potassium channel, two pore domain subfamily K, member 15 2.30944
IFT52 intraflagellar transport 52 2.30944
GTSF1L gametocyte specific factor 1-like 2.30944
OSER1 oxidative stress responsive serine-rich 1 2.30944
MYBL2 v-myb avian myeloblastosis viral oncogene homolog-like 2 2.30944
ADA adenosine deaminase 2.30944
WISP2 WNT1 inducible signaling pathway protein 2 2.30944
FITM2 fat storage-inducing transmembrane protein 2 2.283
TOX2 TOX high mobility group box family member 2 2.283
MIR3646 microRNA 3646 2.283
TTPAL tocopherol (alpha) transfer protein-like 2.283
GDAP1L1 ganglioside induced differentiation associated protein 1-like 1 2.283
C20ORF62 chromosome 20 open reading frame 62 2.283
HNF4A hepatocyte nuclear factor 4, alpha 2.283
PKIG protein kinase (cAMP-dependent, catalytic) inhibitor gamma 2.26395
SERINC3 serine incorporator 3 2.26395
MIR3194 microRNA 3194 2.24845
SALL4 spalt-like transcription factor 4 2.24139
ATP9A ATPase, class II, type 9A 2.24139
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 2.2355
ZFP64 ZFP64 zinc finger protein 2.22783
TSHZ2 teashirt zinc finger homeobox 2 2.22558
ZNF217 zinc finger protein 217 2.22291
SUMO1P1 SUMO1 pseudogene 1 2.22291
FAM45B family with sequence similarity 45, member A pseudogene 2.15316
GRM7 glutamate receptor, metabotropic 7 2.14116
RAD18 RAD18 E3 ubiquitin protein ligase 2.14116
VENTXP7 VENT homeobox pseudogene 7 2.14116
SGOL1-AS1 SGOL1 antisense RNA 1 2.12703
PP2D1 protein phosphatase 2C-like domain containing 1 2.12703
SATB1 SATB homeobox 1 2.12703
VGLL4 vestigial-like family member 4 2.12703
KCNH8 potassium channel, voltage gated eag related subfamily H, member 8 2.12703
ZNF385D zinc finger protein 385D 2.12703
MIR4791 microRNA 4791 2.12703
KAT2B K(lysine) acetyltransferase 2B 2.12703
RAB5A RAB5A, member RAS oncogene family 2.12703
LOC339862 uncharacterized LOC339862 2.12703
SGOL1 shugoshin-like 1 (S. pombe) 2.12703
EFHB EF-hand domain family, member B 2.12703
LINC00606 long intergenic non-protein coding RNA 606 2.12225
ATG7 autophagy related 7 2.12225
TBC1D5 TBC1 domain family, member 5 2.12225
IQSEC1 IQ motif and Sec7 domain 1 2.12225
REEP3 receptor accessory protein 3 2.10992
KIAA1217 KIAA1217 2.09529
MIR603 microRNA 603 2.09431
SNORD112 small nucleolar RNA, C/D box 112 2.04693

low copy number

Symbol Name Standardized Value
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -3.83684
OR4F17 olfactory receptor, family 4, subfamily F, member 17 -3.7119
UQCRBP1 ubiquinol-cytochrome c reductase binding protein pseudogene 1 -3.50611
SAXO1 stabilizer of axonemal microtubules 1 -3.36169
MIR3152 microRNA 3152 -3.16503
ADAMTSL1 ADAMTS-like 1 -3.16503
MIR1468 microRNA 1468 -3.05196
AMER1 APC membrane recruitment protein 1 -2.99615
ARHGEF9 Cdc42 guanine nucleotide exchange factor (GEF) 9 -2.99615
SH3GL2 SH3-domain GRB2-like 2 -2.98294
MTMR8 myotubularin related protein 8 -2.9644
ASB12 ankyrin repeat and SOCS box containing 12 -2.9644
CNTLN centlein, centrosomal protein -2.95896
FAAH2 fatty acid amide hydrolase 2 -2.94448
TEX13A testis expressed 13A -2.93929
POU3F4 POU class 3 homeobox 4 -2.93929
SPIN2A spindlin family, member 2A -2.91868
DACH2 dachshund family transcription factor 2 -2.91868
SPIN2B spindlin family, member 2B -2.91868
SLC24A2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 -2.89515
HDX highly divergent homeobox -2.89302
SPIN3 spindlin family, member 3 -2.89302
KLHL4 kelch-like family member 4 -2.89201
CYLC1 cylicin, basic protein of sperm head cytoskeleton 1 -2.89201
MIR651 microRNA 651 -2.86624
MID1 midline 1 -2.84999
PDE4D phosphodiesterase 4D, cAMP-specific -2.83605
LRRC19 leucine rich repeat containing 19 -2.82668
CCSER1 coiled-coil serine-rich protein 1 -2.82606
PLAA phospholipase A2-activating protein -2.82318
CAAP1 caspase activity and apoptosis inhibitor 1 -2.82318
IFT74 intraflagellar transport 74 -2.82083
HDHD1 haloacid dehalogenase-like hydrolase domain containing 1 -2.80688
CES1P1 carboxylesterase 1 pseudogene 1 -2.74485