RERF-LC-SQ1 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from lung (Cancer Cell Line Encyclopedia)
Similar Terms
Downloads & Tools

Genes

86 genes with high or low copy number in RERF-LC-SQ1 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
CHRD chordin 2.39327
ABCC5 ATP-binding cassette, sub-family C (CFTR/MRP), member 5 2.39327
PARL presenilin associated, rhomboid-like 2.39327
THPO thrombopoietin 2.39327
POLR2H polymerase (RNA) II (DNA directed) polypeptide H 2.39327
FAM131A family with sequence similarity 131, member A 2.39327
HTR3D 5-hydroxytryptamine (serotonin) receptor 3D, ionotropic 2.39327
ABCC5-AS1 ABCC5 antisense RNA 1 2.39327
MAP6D1 MAP6 domain containing 1 2.39327
CLCN2 chloride channel, voltage-sensitive 2 2.39327
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 2.36889
CAMK2N2 calcium/calmodulin-dependent protein kinase II inhibitor 2 2.36889
ABCF3 ATP-binding cassette, sub-family F (GCN20), member 3 2.36889
VWA5B2 von Willebrand factor A domain containing 5B2 2.36889
EPHB3 EPH receptor B3 2.36889
EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa 2.36889
ECE2 endothelin converting enzyme 2 2.36889
ALG3 ALG3, alpha-1,3- mannosyltransferase 2.36889
MIR1224 microRNA 1224 2.36889
HTR3C 5-hydroxytryptamine (serotonin) receptor 3C, ionotropic 2.36889
HTR3E 5-hydroxytryptamine (serotonin) receptor 3E, ionotropic 2.36889
PSMD2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 2.36889
YEATS2 YEATS domain containing 2 2.36889
AP2M1 adaptor-related protein complex 2, mu 1 subunit 2.36889
MAGEF1 melanoma antigen family F1 2.36889
DVL3 dishevelled segment polarity protein 3 2.36889
KLHL24 kelch-like family member 24 2.36889
LINC00888 long intergenic non-protein coding RNA 888 2.35236
KLHL6 kelch-like family member 6 2.35236
SNORD66 small nucleolar RNA, C/D box 66 2.35236
C3ORF70 chromosome 3 open reading frame 70 2.35236
B3GNT5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 2.3178
VPS8 vacuolar protein sorting 8 homolog (S. cerevisiae) 2.3178
MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2.30944
MCCC1 methylcrotonoyl-CoA carboxylase 1 (alpha) 2.30944
LAMP3 lysosomal-associated membrane protein 3 2.30944
ATP11B ATPase, class VI, type 11B 2.283
DCUN1D1 DCN1, defective in cullin neddylation 1, domain containing 1 2.283
USP13 ubiquitin specific peptidase 13 (isopeptidase T-3) 2.26395
ACTL6A actin-like 6A 2.26395
NDUFB5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa 2.26395
MRPL47 mitochondrial ribosomal protein L47 2.26395
GNB4 guanine nucleotide binding protein (G protein), beta polypeptide 4 2.25904
KCNMB3 potassium channel subfamily M regulatory beta subunit 3 2.25904
PEX5L peroxisomal biogenesis factor 5-like 2.25904
MFN1 mitofusin 1 2.25904
ZNF639 zinc finger protein 639 2.25904
TTC14 tetratricopeptide repeat domain 14 2.24845
FXR1 fragile X mental retardation, autosomal homolog 1 2.24845
FLJ46066 uncharacterized LOC401103 2.24845
DNAJC19 DnaJ (Hsp40) homolog, subfamily C, member 19 2.24845
CCDC39 coiled-coil domain containing 39 2.24845
LINC00578 long intergenic non-protein coding RNA 578 2.24845
ZMAT3 zinc finger, matrin-type 3 2.24845
PPP1R9A protein phosphatase 1, regulatory subunit 9A 2.24845
KCNMB2 potassium channel subfamily M regulatory beta subunit 2 2.24139
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha 2.24139
EPHA6 EPH receptor A6 2.12931
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 2.06341
SOX2 SRY (sex determining region Y)-box 2 2.06316
SOX2-OT SOX2 overlapping transcript 2.06316

low copy number

Symbol Name Standardized Value
SPATA31A6 SPATA31 subfamily A, member 6 -2.83114
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3 -2.80776
MIR491 microRNA 491 -2.80395
SNORA30 small nucleolar RNA, H/ACA box 30 -2.79995
FOCAD focadhesin -2.7828
HACD4 3-hydroxyacyl-CoA dehydratase 4 -2.78237
CNTNAP3B contactin associated protein-like 3B -2.7778
IFNB1 interferon, beta 1, fibroblast -2.77588
IFNW1 interferon, omega 1 -2.77446
IFNA21 interferon, alpha 21 -2.77074
IFNA4 interferon, alpha 4 -2.7694
IFNA16 interferon, alpha 16 -2.76453
IFNA17 interferon, alpha 17 -2.76453
IFNA14 interferon, alpha 14 -2.75972
IFNA10 interferon, alpha 10 -2.75972
IFNA7 interferon, alpha 7 -2.75972
IFNA22P interferon, alpha 22, pseudogene -2.75555
IFNA5 interferon, alpha 5 -2.74973
KLHL9 kelch-like family member 9 -2.74526
IFNA6 interferon, alpha 6 -2.74032
IFNA13 interferon, alpha 13 -2.73798
IFNA2 interferon, alpha 2 -2.73608
IFNA8 interferon, alpha 8 -2.73024
IFNA1 interferon, alpha 1 -2.72828
IFNE interferon, epsilon -2.72466