RMC-6236_A-427 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description RMC-6236 perturbation in A-427 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the RMC-6236_A-427 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
NLGN1 neuroligin 1 0.259092
VIM vimentin 0.235987
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.225588
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.217485
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.148818
ALDH1A1 aldehyde dehydrogenase 1 family, member A1 0.102951
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0955576
EEF2 eukaryotic translation elongation factor 2 0.0790061
PCBP2 poly(rC) binding protein 2 0.0777169
ERBB4 erb-b2 receptor tyrosine kinase 4 0.0695126
ANXA1 annexin A1 0.0691525
NAP1L1 nucleosome assembly protein 1-like 1 0.0644583
TENM3 teneurin transmembrane protein 3 0.0613645
CALR calreticulin 0.0567031
TPI1 triosephosphate isomerase 1 0.0553078
FTH1 ferritin, heavy polypeptide 1 0.0537141
RPS3 ribosomal protein S3 0.0529838
PCDH7 protocadherin 7 0.0524834
ANKRD12 ankyrin repeat domain 12 0.0514798
GJA1 gap junction protein, alpha 1, 43kDa 0.0513726
CNRIP1 cannabinoid receptor interacting protein 1 0.0500405
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0494339
TMSB10 thymosin beta 10 0.0476505
PDGFC platelet derived growth factor C 0.0474246
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0455835
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 0.0450898
OLR1 oxidized low density lipoprotein (lectin-like) receptor 1 0.0450625
RPS12 ribosomal protein S12 0.0448755
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0446301
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0413398
CDK6 cyclin-dependent kinase 6 0.0400212
PCDH9 protocadherin 9 0.0389684
HMGA2 high mobility group AT-hook 2 0.038308
RPS2 ribosomal protein S2 0.0381125
TPM3 tropomyosin 3 0.0378823
WWOX WW domain containing oxidoreductase 0.0366983
DPYD dihydropyrimidine dehydrogenase 0.0363775
SRRM2 serine/arginine repetitive matrix 2 0.0363387
HDAC9 histone deacetylase 9 0.036096
PDE4D phosphodiesterase 4D, cAMP-specific 0.0357428
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0356813
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0352443
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0350927
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B 0.0350351
FTL ferritin, light polypeptide 0.034634
RIMS2 regulating synaptic membrane exocytosis 2 0.0343501
AREG amphiregulin 0.0337599
HSPA8 heat shock 70kDa protein 8 0.0332036
EIF4B eukaryotic translation initiation factor 4B 0.0330382
YAP1 Yes-associated protein 1 0.0324651
CRISPLD1 cysteine-rich secretory protein LCCL domain containing 1 0.0318966
RRM2 ribonucleotide reductase M2 0.0303033
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0297541
RPL26 ribosomal protein L26 0.0294852
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.029364
RACK1 receptor for activated C kinase 1 0.0288551
MED13L mediator complex subunit 13-like 0.0284085
NEGR1 neuronal growth regulator 1 0.0281824
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0278162
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0278158
MPG N-methylpurine-DNA glycosylase 0.0277397
RPL3 ribosomal protein L3 0.0274543
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0272114
PRDX1 peroxiredoxin 1 0.0272101
CCND1 cyclin D1 0.0272046
CCSER1 coiled-coil serine-rich protein 1 0.0270885
BIRC3 baculoviral IAP repeat containing 3 0.0266399
DST dystonin 0.0265905
AKT3 v-akt murine thymoma viral oncogene homolog 3 0.0261893
CELF2 CUGBP, Elav-like family member 2 0.0260552
EPHA6 EPH receptor A6 0.0259498
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 0.0258853
NACA nascent polypeptide-associated complex alpha subunit 0.025353
USP9X ubiquitin specific peptidase 9, X-linked 0.0252857
IPO7 importin 7 0.0250399
EIF1 eukaryotic translation initiation factor 1 0.0248137
ENO1 enolase 1, (alpha) 0.0246802
YBX3 Y box binding protein 3 0.0246518
PTGES3 prostaglandin E synthase 3 (cytosolic) 0.0246139
RPS8 ribosomal protein S8 0.024284
CEP112 centrosomal protein 112kDa 0.0242609
LRMDA leucine rich melanocyte differentiation associated 0.0241949
RPS7 ribosomal protein S7 0.0240581
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0240425
GABARAPL1 GABA(A) receptor-associated protein like 1 0.0237834
ARID1B AT rich interactive domain 1B (SWI1-like) 0.0227852
SNCA synuclein, alpha (non A4 component of amyloid precursor) 0.0225041
SFTPA2 surfactant protein A2 0.022442
EPHA5 EPH receptor A5 0.0221186
LPP LIM domain containing preferred translocation partner in lipoma 0.0217116
EXOC4 exocyst complex component 4 0.0215863
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0215402
ZBTB20 zinc finger and BTB domain containing 20 0.0214808
FLNA filamin A, alpha 0.0213297
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0210416
CLPTM1L CLPTM1-like 0.0210309
ZSWIM6 zinc finger, SWIM-type containing 6 0.020903
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0208912
PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 0.0207477
EDN1 endothelin 1 0.0205396

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.27562
STARD4 StAR-related lipid transfer (START) domain containing 4 -0.0824675
EGR1 early growth response 1 -0.0551939
FBXO11 F-box protein 11 -0.0422603
ZNF804A zinc finger protein 804A -0.0412321
NHSL1 NHS-like 1 -0.0410664
TMEM123 transmembrane protein 123 -0.0408868
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0391645
SLC38A2 solute carrier family 38, member 2 -0.0390682
BIRC6 baculoviral IAP repeat containing 6 -0.0383798
TAS2R14 taste receptor, type 2, member 14 -0.0379111
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0346353
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0302216
EHBP1 EH domain binding protein 1 -0.028923
HMGA1 high mobility group AT-hook 1 -0.0269101
WDR45B WD repeat domain 45B -0.0258255
WASF2 WAS protein family, member 2 -0.0255507
TM4SF1 transmembrane 4 L six family member 1 -0.0253357
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b -0.0247096
USP34 ubiquitin specific peptidase 34 -0.024585
SLC38A1 solute carrier family 38, member 1 -0.0242996
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 -0.0236141
ASPH aspartate beta-hydroxylase -0.0232952
MARCHF6 membrane associated ring-CH-type finger 6 -0.0232091
CDK17 cyclin-dependent kinase 17 -0.0226481
NABP1 nucleic acid binding protein 1 -0.0223586
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0220758
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.021962
KPNB1 karyopherin (importin) beta 1 -0.0219571
RPL6 ribosomal protein L6 -0.0216463
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0212355
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0202288
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0200231
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0196737
STAU1 staufen double-stranded RNA binding protein 1 -0.019515
MARK3 MAP/microtubule affinity-regulating kinase 3 -0.0193912
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0193217
RAB10 RAB10, member RAS oncogene family -0.0191819
TMEM41B transmembrane protein 41B -0.0191578
DKK1 dickkopf WNT signaling pathway inhibitor 1 -0.0191335
H1-0 H1.0 linker histone -0.0191024
LOC112694756 uncharaterized LOC112694756 -0.0190382
TMEM131 transmembrane protein 131 -0.0189256
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha -0.0188311
TUBB tubulin, beta class I -0.0187643
MEMO1 mediator of cell motility 1 -0.0184644
LRPPRC leucine-rich pentatricopeptide repeat containing -0.0183851
KCMF1 potassium channel modulatory factor 1 -0.0183636
RPL38 ribosomal protein L38 -0.0183177
UBE2D2 ubiquitin-conjugating enzyme E2D 2 -0.0182401
CSNK1A1 casein kinase 1, alpha 1 -0.0182137
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0181709
RAP1B RAP1B, member of RAS oncogene family -0.0180853
HNRNPK heterogeneous nuclear ribonucleoprotein K -0.0180729
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -0.0178504
PCNP PEST proteolytic signal containing nuclear protein -0.01772
RAB1A RAB1A, member RAS oncogene family -0.0175504
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0173962
GLG1 golgi glycoprotein 1 -0.0171688
RPS6 ribosomal protein S6 -0.0170231
TUBA1B tubulin, alpha 1b -0.016948
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0169
GARS1 glycyl-tRNA synthetase 1 -0.0167806
RPS29 ribosomal protein S29 -0.0167134
TENT4A terminal nucleotidyltransferase 4A -0.0166421
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0165032
ZFAND6 zinc finger, AN1-type domain 6 -0.016489
STRN3 striatin, calmodulin binding protein 3 -0.0162847
SNX14 sorting nexin 14 -0.0162183
MYL12B myosin, light chain 12B, regulatory -0.016179
PSME4 proteasome (prosome, macropain) activator subunit 4 -0.0157728
ARL5B ADP-ribosylation factor-like 5B -0.0157317
TASOR2 transcription activation suppressor family member 2 -0.0156279
GNAS GNAS complex locus -0.0155679
NUP58 nucleoporin 58 -0.0153714
ABI2 abl-interactor 2 -0.0153084
TSC22D2 TSC22 domain family, member 2 -0.0152595
UBE2K ubiquitin-conjugating enzyme E2K -0.0152477
MTAP methylthioadenosine phosphorylase -0.0152064
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 -0.0151532
CDK12 cyclin-dependent kinase 12 -0.0149722
CSE1L CSE1 chromosome segregation 1-like (yeast) -0.0149301
RPLP0 ribosomal protein, large, P0 -0.0147943
RPS15 ribosomal protein S15 -0.0146896
GNB4 guanine nucleotide binding protein (G protein), beta polypeptide 4 -0.0145635
MON2 MON2 homolog (S. cerevisiae) -0.0145195
CNOT1 CCR4-NOT transcription complex, subunit 1 -0.014456
PPP1CC protein phosphatase 1, catalytic subunit, gamma isozyme -0.0141982
SBNO1 strawberry notch homolog 1 (Drosophila) -0.0140885
NBAS neuroblastoma amplified sequence -0.0139893
GRB2 growth factor receptor-bound protein 2 -0.0139872
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0138475
ACTG1 actin gamma 1 -0.0138029
ANKHD1 ankyrin repeat and KH domain containing 1 -0.0137906
GORASP2 golgi reassembly stacking protein 2, 55kDa -0.0137532
ADAM17 ADAM metallopeptidase domain 17 -0.0137456
NPC1 Niemann-Pick disease, type C1 -0.0136995
AP3S1 adaptor-related protein complex 3, sigma 1 subunit -0.0136191
LARP1 La ribonucleoprotein domain family, member 1 -0.0135876
COG5 component of oligomeric golgi complex 5 -0.0134387