RMC-6236_A498 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description RMC-6236 perturbation in A498 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the RMC-6236_A498 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FTH1 ferritin, heavy polypeptide 1 0.181388
KYNU kynureninase 0.0661096
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0599189
FTL ferritin, light polypeptide 0.0571506
TXNRD1 thioredoxin reductase 1 0.0443808
MYH9 myosin, heavy chain 9, non-muscle 0.0400443
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0399165
PBX1 pre-B-cell leukemia homeobox 1 0.0385047
EXT1 exostosin glycosyltransferase 1 0.0368235
ZSWIM6 zinc finger, SWIM-type containing 6 0.035444
PDLIM5 PDZ and LIM domain 5 0.0338357
PALLD palladin, cytoskeletal associated protein 0.031696
SFTPA2 surfactant protein A2 0.0301545
CSF1 colony stimulating factor 1 (macrophage) 0.0290807
PLIN2 perilipin 2 0.0288797
ENAH enabled homolog (Drosophila) 0.0284548
B2M beta-2-microglobulin 0.0278995
TLE4 transducin-like enhancer of split 4 0.0259179
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0248355
NFE2L2 nuclear factor, erythroid 2-like 2 0.0247511
ALDH1A1 aldehyde dehydrogenase 1 family, member A1 0.023938
RNF213 ring finger protein 213 0.023469
CP ceruloplasmin (ferroxidase) 0.0233253
EEF2 eukaryotic translation elongation factor 2 0.0231545
RPS2 ribosomal protein S2 0.0231025
MBNL1 muscleblind-like splicing regulator 1 0.022972
IFI44L interferon-induced protein 44-like 0.0204104
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0193697
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0184222
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0183999
PHLDB2 pleckstrin homology-like domain, family B, member 2 0.017978
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0178491
GPC5 glypican 5 0.0174229
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0167598
RPL12 ribosomal protein L12 0.0166438
INTS6 integrator complex subunit 6 0.0163628
ARID5B AT rich interactive domain 5B (MRF1-like) 0.016215
SLC4A4 solute carrier family 4 (sodium bicarbonate cotransporter), member 4 0.0160183
SP100 SP100 nuclear antigen 0.0159844
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0159299
MYOF myoferlin 0.0158343
MBNL2 muscleblind-like splicing regulator 2 0.0152723
SLFN5 schlafen family member 5 0.0151701
SEMA4A sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 0.0150309
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0149389
SKAP2 src kinase associated phosphoprotein 2 0.0147763
NFE2L1 nuclear factor, erythroid 2-like 1 0.0142098
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.0135384
ZBTB41 zinc finger and BTB domain containing 41 0.0133669
CLIP1 CAP-GLY domain containing linker protein 1 0.013309
PCBP3 poly(rC) binding protein 3 0.0131291
DSCAM Down syndrome cell adhesion molecule 0.0129875
RBPMS RNA binding protein with multiple splicing 0.0129307
ZBTB20 zinc finger and BTB domain containing 20 0.0129257
RPS4X ribosomal protein S4, X-linked 0.0129189
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0127586
MGST1 microsomal glutathione S-transferase 1 0.0127585
TUT7 terminal uridylyl transferase 7 0.012723
MX1 MX dynamin-like GTPase 1 0.0127065
IGFN1 immunoglobulin-like and fibronectin type III domain containing 1 0.0123826
SAA2 serum amyloid A2 0.0122338
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 0.0121892
ATF3 activating transcription factor 3 0.012151
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0118458
AHNAK AHNAK nucleoprotein 0.0117929
GBP2 guanylate binding protein 2, interferon-inducible 0.0117555
PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 0.0117513
PLK2 polo-like kinase 2 0.0117412
TGFB2 transforming growth factor, beta 2 0.0117011
ABLIM1 actin binding LIM protein 1 0.0114249
ADAR adenosine deaminase, RNA-specific 0.011325
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0113099
KLF6 Kruppel-like factor 6 0.0112751
FNIP2 folliculin interacting protein 2 0.0110427
NNMT nicotinamide N-methyltransferase 0.0109669
FHL2 four and a half LIM domains 2 0.0109607
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0108098
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.0107444
PLSCR2 phospholipid scramblase 2 0.0107261
GLIS3 GLIS family zinc finger 3 0.0107103
CHMP5 charged multivesicular body protein 5 0.0104907
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 0.0104277
SIK2 salt-inducible kinase 2 0.0104245
LPP LIM domain containing preferred translocation partner in lipoma 0.0103809
RPS7 ribosomal protein S7 0.0101284
GABARAPL1 GABA(A) receptor-associated protein like 1 0.00999877
ARRDC3 arrestin domain containing 3 0.00997716
AKR1C1 aldo-keto reductase family 1, member C1 0.00993395
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble 0.00993109
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.00988038
EEA1 early endosome antigen 1 0.00978369
RACK1 receptor for activated C kinase 1 0.00973879
CANX calnexin 0.00970851
EPAS1 endothelial PAS domain protein 1 0.00968484
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.00967527
GFPT2 glutamine-fructose-6-phosphate transaminase 2 0.00960099
ATF4 activating transcription factor 4 0.00958544
RPL26 ribosomal protein L26 0.00956413
TXNIP thioredoxin interacting protein 0.00952881
PTPRK protein tyrosine phosphatase, receptor type, K 0.00947483

decreased expression

Symbol Name Standardized Value
IGFBP3 insulin-like growth factor binding protein 3 -0.135482
CD44 CD44 molecule (Indian blood group) -0.100761
VIM vimentin -0.0961358
NDRG1 N-myc downstream regulated 1 -0.0938281
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0838478
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0762227
FRMD4A FERM domain containing 4A -0.0711102
RAI14 retinoic acid induced 14 -0.0705281
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0653054
RTN4 reticulon 4 -0.0649567
TRIO trio Rho guanine nucleotide exchange factor -0.0568105
UBA6 ubiquitin-like modifier activating enzyme 6 -0.0533526
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.052044
NAV2 neuron navigator 2 -0.0503808
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0499306
TMSB10 thymosin beta 10 -0.0483661
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) -0.0483221
DIAPH3 diaphanous-related formin 3 -0.0478244
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.044103
CALU calumenin -0.0435973
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.0425981
ATP13A3 ATPase type 13A3 -0.0421451
ASPH aspartate beta-hydroxylase -0.039941
RAB1A RAB1A, member RAS oncogene family -0.0399129
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -0.0382725
KPNB1 karyopherin (importin) beta 1 -0.0375963
ABTB3 ankyrin repeat and BTB domain containing 3 -0.0374597
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0364817
CDCP1 CUB domain containing protein 1 -0.0362281
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0361675
HLA-B major histocompatibility complex, class I, B -0.0358379
CTSD cathepsin D -0.0356179
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0352737
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0351392
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0349525
FMNL2 formin-like 2 -0.0348407
RUNX1 runt-related transcription factor 1 -0.0334513
IARS1 isoleucyl-tRNA synthetase 1 -0.0334242
PKM pyruvate kinase, muscle -0.0332066
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0331655
CADM1 cell adhesion molecule 1 -0.0331468
CD82 CD82 molecule -0.0331196
RPS6 ribosomal protein S6 -0.0331191
PTBP3 polypyrimidine tract binding protein 3 -0.0330348
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0326557
UGCG UDP-glucose ceramide glucosyltransferase -0.032469
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0324136
FAM107B family with sequence similarity 107, member B -0.0322798
PTK2 protein tyrosine kinase 2 -0.0315168
NOP58 NOP58 ribonucleoprotein -0.031285
SPAG9 sperm associated antigen 9 -0.0311655
PTMA prothymosin, alpha -0.0311616
MARCHF6 membrane associated ring-CH-type finger 6 -0.0311509
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.030552
PDIA3 protein disulfide isomerase family A, member 3 -0.0302178
OSBPL3 oxysterol binding protein-like 3 -0.0301643
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats -0.0301453
GNAS GNAS complex locus -0.0301249
RBM39 RNA binding motif protein 39 -0.0300503
POTEF POTE ankyrin domain family, member F -0.0290768
SRPK2 SRSF protein kinase 2 -0.0286647
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0284349
RRM2 ribonucleotide reductase M2 -0.0283696
PALS2 protein associated with LIN7 2, MAGUK p55 family member -0.0281244
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0281156
TPST1 tyrosylprotein sulfotransferase 1 -0.0277767
ANKRD11 ankyrin repeat domain 11 -0.0275988
PFN1 profilin 1 -0.0273032
ARL4C ADP-ribosylation factor-like 4C -0.0272815
RALA v-ral simian leukemia viral oncogene homolog A (ras related) -0.0269961
EML4 echinoderm microtubule associated protein like 4 -0.026984
BICD1 bicaudal D homolog 1 (Drosophila) -0.0267724
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0262783
MRPS6 mitochondrial ribosomal protein S6 -0.0261506
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0261494
CDK6 cyclin-dependent kinase 6 -0.025801
KIRREL1 kirre like nephrin family adhesion molecule 1 -0.025757
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0255629
ANKIB1 ankyrin repeat and IBR domain containing 1 -0.0253837
ACBD3 acyl-CoA binding domain containing 3 -0.0253504
HIPK2 homeodomain interacting protein kinase 2 -0.0252469
RAB7A RAB7A, member RAS oncogene family -0.0251996
COG5 component of oligomeric golgi complex 5 -0.025101
CKAP4 cytoskeleton-associated protein 4 -0.0248547
JMJD1C jumonji domain containing 1C -0.0248026
GOLGA4 golgin A4 -0.0245593
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0243979
MTDH metadherin -0.0243613
PRKCA protein kinase C, alpha -0.0242876
PDE8A phosphodiesterase 8A -0.0241862
RHEB Ras homolog enriched in brain -0.0241526
GARS1 glycyl-tRNA synthetase 1 -0.0240598
CBX3 chromobox homolog 3 -0.0236368
CLTC clathrin, heavy chain (Hc) -0.0236302
HMGA1 high mobility group AT-hook 1 -0.0233508
TUBA1B tubulin, alpha 1b -0.0233269
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0231483
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0231016
COPA coatomer protein complex, subunit alpha -0.0229894
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 -0.022857