RMC-6236_AN3 CA Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description RMC-6236 perturbation in AN3 CA cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the RMC-6236_AN3 CA drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
EEF2 eukaryotic translation elongation factor 2 0.0747391
VIM vimentin 0.0738602
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0696815
TMSB4X thymosin beta 4, X-linked 0.0629817
FTH1 ferritin, heavy polypeptide 1 0.0518843
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0427837
RACK1 receptor for activated C kinase 1 0.0348848
ZFP36L1 ZFP36 ring finger protein-like 1 0.0343459
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0337805
HSPA8 heat shock 70kDa protein 8 0.033637
MYOF myoferlin 0.0328268
SRRM2 serine/arginine repetitive matrix 2 0.0318787
TRIO trio Rho guanine nucleotide exchange factor 0.0314471
RPS2 ribosomal protein S2 0.0303678
SAMD4A sterile alpha motif domain containing 4A 0.0299721
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0296253
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0287806
VEGFA vascular endothelial growth factor A 0.0283212
FN1 fibronectin 1 0.0274039
SOX4 SRY (sex determining region Y)-box 4 0.0270707
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0265438
PCDH7 protocadherin 7 0.0259603
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0237145
SFTPA2 surfactant protein A2 0.0234574
DDIT4 DNA-damage-inducible transcript 4 0.0229924
PDE4B phosphodiesterase 4B, cAMP-specific 0.0227898
EXT1 exostosin glycosyltransferase 1 0.021906
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0213889
IGFBP3 insulin-like growth factor binding protein 3 0.0209654
ASPH aspartate beta-hydroxylase 0.0200692
NALF1 NALCN channel auxiliary factor 1 0.0184473
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0169386
RND3 Rho family GTPase 3 0.0168768
RPL3 ribosomal protein L3 0.0167884
NACA nascent polypeptide-associated complex alpha subunit 0.0167253
PDK4 pyruvate dehydrogenase kinase, isozyme 4 0.0165323
TLN1 talin 1 0.0163666
TIAM2 T-cell lymphoma invasion and metastasis 2 0.0162141
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.016046
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.0160224
SET SET nuclear proto-oncogene 0.0152099
FRMD6 FERM domain containing 6 0.0150971
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 0.0150868
RPL7 ribosomal protein L7 0.0150371
BBS9 Bardet-Biedl syndrome 9 0.0150121
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.014975
RAI1 retinoic acid induced 1 0.0149027
ID3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein 0.0143784
PARD3B par-3 family cell polarity regulator beta 0.0143382
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0142915
AHNAK AHNAK nucleoprotein 0.0142619
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0141103
ARRDC3 arrestin domain containing 3 0.0137848
KLF6 Kruppel-like factor 6 0.0137458
PDE10A phosphodiesterase 10A 0.0136976
ATF4 activating transcription factor 4 0.0136725
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 0.0136274
FLNA filamin A, alpha 0.0134902
RPL27 ribosomal protein L27 0.0131112
EFNA5 ephrin-A5 0.0128694
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.012735
IER2 immediate early response 2 0.0126716
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 0.0125607
MALSU1 mitochondrial assembly of ribosomal large subunit 1 0.0124499
PCBP2 poly(rC) binding protein 2 0.0124391
TIMP3 TIMP metallopeptidase inhibitor 3 0.0122253
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0122053
IGF2 insulin-like growth factor 2 0.0121258
B2M beta-2-microglobulin 0.0120131
PDLIM5 PDZ and LIM domain 5 0.012013
RPL12 ribosomal protein L12 0.012005
ADM adrenomedullin 0.0119158
KCNE4 potassium channel, voltage gated subfamily E regulatory beta subunit 4 0.0118671
KANSL1L KAT8 regulatory NSL complex subunit 1-like 0.011802
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0117652
ELL2 elongation factor, RNA polymerase II, 2 0.0115766
DOCK4 dedicator of cytokinesis 4 0.0113859
EPRS1 glutamyl-prolyl-tRNA synthetase 1 0.0112427
JUN jun proto-oncogene 0.0112023
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0111595
RPS18 ribosomal protein S18 0.0111362
EIF1 eukaryotic translation initiation factor 1 0.0110747
EIF5 eukaryotic translation initiation factor 5 0.01107
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0110527
CCSAP centriole, cilia and spindle-associated protein 0.0110416
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.011029
BRD2 bromodomain containing 2 0.0110174
INTS6 integrator complex subunit 6 0.0109708
NCAPG non-SMC condensin I complex, subunit G 0.0109693
PSD3 pleckstrin and Sec7 domain containing 3 0.0109394
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 0.0108576
RPS7 ribosomal protein S7 0.0107936
H4C15 H4 clustered histone 15 0.0107594
RPS4X ribosomal protein S4, X-linked 0.0105174
EIF4B eukaryotic translation initiation factor 4B 0.0105158
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0104581
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0104556
DNAJB6 DnaJ (Hsp40) homolog, subfamily B, member 6 0.0103968
IGF1R insulin-like growth factor 1 receptor 0.0103014
GYS1 glycogen synthase 1 (muscle) 0.0102563

decreased expression

Symbol Name Standardized Value
PEG10 paternally expressed 10 -0.137372
PRKG1 protein kinase, cGMP-dependent, type I -0.0912699
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0895286
ZEB1 zinc finger E-box binding homeobox 1 -0.0888663
ZNF292 zinc finger protein 292 -0.0822621
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0813508
TPK1 thiamin pyrophosphokinase 1 -0.0760551
NFIB nuclear factor I/B -0.075041
MED13L mediator complex subunit 13-like -0.0729366
QKI QKI, KH domain containing, RNA binding -0.0646103
MEOX2 mesenchyme homeobox 2 -0.0610356
B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 -0.0606274
PDE4D phosphodiesterase 4D, cAMP-specific -0.0588294
KMT2C lysine (K)-specific methyltransferase 2C -0.0572841
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0572775
MGP matrix Gla protein -0.0565004
NFIA nuclear factor I/A -0.0537148
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) -0.0528461
RHEB Ras homolog enriched in brain -0.0499867
KAZN kazrin, periplakin interacting protein -0.0490628
JMJD1C jumonji domain containing 1C -0.0490537
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0478375
NBEA neurobeachin -0.0471728
FNDC3B fibronectin type III domain containing 3B -0.047171
SBF2 SET binding factor 2 -0.0468099
PDGFC platelet derived growth factor C -0.0463245
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0462674
ZFAND3 zinc finger, AN1-type domain 3 -0.0435664
MMP16 matrix metallopeptidase 16 (membrane-inserted) -0.043537
SEPTIN11 septin 11 -0.0424586
ZFHX3 zinc finger homeobox 3 -0.0423829
KDM5B lysine (K)-specific demethylase 5B -0.0418687
GOLGA4 golgin A4 -0.0413341
SRPK2 SRSF protein kinase 2 -0.0411645
NCOR2 nuclear receptor corepressor 2 -0.0409556
AFF4 AF4/FMR2 family, member 4 -0.040063
PTMA prothymosin, alpha -0.039982
TET1 tet methylcytosine dioxygenase 1 -0.039527
FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) -0.0381899
CADM2 cell adhesion molecule 2 -0.0377969
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0377289
ERBIN erbb2 interacting protein -0.037622
PARD3 par-3 family cell polarity regulator -0.0369487
ENAH enabled homolog (Drosophila) -0.0368183
SMYD3 SET and MYND domain containing 3 -0.0366204
TRPM7 transient receptor potential cation channel, subfamily M, member 7 -0.0365918
ARID2 AT rich interactive domain 2 (ARID, RFX-like) -0.0359129
PUM2 pumilio RNA-binding family member 2 -0.0356659
MARCHF6 membrane associated ring-CH-type finger 6 -0.0344866
RANBP17 RAN binding protein 17 -0.0342056
PCM1 pericentriolar material 1 -0.0327658
DLG1 discs, large homolog 1 (Drosophila) -0.0324853
PIAS2 protein inhibitor of activated STAT, 2 -0.0318224
PRRC2B proline-rich coiled-coil 2B -0.0317059
ANKRD17 ankyrin repeat domain 17 -0.0312443
FGFR1 fibroblast growth factor receptor 1 -0.0311801
TM9SF3 transmembrane 9 superfamily member 3 -0.0308638
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0308426
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 -0.030786
ACACA acetyl-CoA carboxylase alpha -0.029879
SPPL3 signal peptide peptidase like 3 -0.0293053
MTUS1 microtubule associated tumor suppressor 1 -0.0286568
MEST mesoderm specific transcript -0.0286143
EPB41L2 erythrocyte membrane protein band 4.1-like 2 -0.0283479
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0282744
BMPR1A bone morphogenetic protein receptor, type IA -0.0280586
FER fer (fps/fes related) tyrosine kinase -0.0278133
ANKRD11 ankyrin repeat domain 11 -0.027772
SENP6 SUMO1/sentrin specific peptidase 6 -0.0273977
MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase -0.02735
UBE2G1 ubiquitin-conjugating enzyme E2G 1 -0.0271501
PHIP pleckstrin homology domain interacting protein -0.0268726
CCSER2 coiled-coil serine-rich protein 2 -0.0264141
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit -0.0262887
BIRC6 baculoviral IAP repeat containing 6 -0.0262449
IGF2R insulin-like growth factor 2 receptor -0.0262259
MNAT1 MNAT CDK-activating kinase assembly factor 1 -0.0261678
ZMYM2 zinc finger, MYM-type 2 -0.0260351
OGA O-GlcNAcase -0.0258172
LARP1 La ribonucleoprotein domain family, member 1 -0.0256974
CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 -0.0255889
AKAP9 A kinase (PRKA) anchor protein 9 -0.0254971
DIPK2A divergent protein kinase domain 2A -0.0254048
SH3RF1 SH3 domain containing ring finger 1 -0.0251021
PGK1 phosphoglycerate kinase 1 -0.0250731
G2E3 G2/M-phase specific E3 ubiquitin protein ligase -0.0247569
PTK2 protein tyrosine kinase 2 -0.0245305
MICU1 mitochondrial calcium uptake 1 -0.0245054
CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 -0.0244757
KPNB1 karyopherin (importin) beta 1 -0.0244011
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0243942
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0243743
ARHGAP12 Rho GTPase activating protein 12 -0.024325
DENND4C DENN/MADD domain containing 4C -0.0243236
FNIP1 folliculin interacting protein 1 -0.0243158
POU2F1 POU class 2 homeobox 1 -0.0242908
GTF2IRD1 GTF2I repeat domain containing 1 -0.0242219
GNG2 guanine nucleotide binding protein (G protein), gamma 2 -0.0241814
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa -0.02418
SLC6A8 solute carrier family 6 (neurotransmitter transporter), member 8 -0.0241391