RMC-6236_C32 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description RMC-6236 perturbation in C32 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the RMC-6236_C32 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
IGFBP3 insulin-like growth factor binding protein 3 0.216187
VIM vimentin 0.202764
FN1 fibronectin 1 0.201769
SFTPA2 surfactant protein A2 0.107762
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.098862
MT2A metallothionein 2A 0.0786694
ENO1 enolase 1, (alpha) 0.0784419
EEF2 eukaryotic translation elongation factor 2 0.07152
FTH1 ferritin, heavy polypeptide 1 0.0673328
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0668147
IFI16 interferon, gamma-inducible protein 16 0.0588931
AKAP12 A kinase (PRKA) anchor protein 12 0.0550445
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.0544467
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0540689
LOC102724023 ES1 protein homolog, mitochondrial 0.0476869
B2M beta-2-microglobulin 0.0476335
LDHA lactate dehydrogenase A 0.0433937
CD44 CD44 molecule (Indian blood group) 0.0418455
KTN1 kinectin 1 (kinesin receptor) 0.0409511
IGFBP5 insulin-like growth factor binding protein 5 0.0404886
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0394548
ATP1A4 ATPase, Na+/K+ transporting, alpha 4 polypeptide 0.037536
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0355564
CENPF centromere protein F, 350/400kDa 0.0341277
ACTN1 actinin, alpha 1 0.0339243
SRRM2 serine/arginine repetitive matrix 2 0.0337773
TSC22D1 TSC22 domain family, member 1 0.0336849
PLIN2 perilipin 2 0.0329612
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0328435
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0319811
IFI6 interferon, alpha-inducible protein 6 0.0315118
TPR translocated promoter region, nuclear basket protein 0.0314596
MKI67 marker of proliferation Ki-67 0.0307207
TXNIP thioredoxin interacting protein 0.0299596
APLP2 amyloid beta (A4) precursor-like protein 2 0.0294341
MYH9 myosin, heavy chain 9, non-muscle 0.0294163
SOX10 SRY (sex determining region Y)-box 10 0.0293595
LGALS3 lectin, galactoside-binding, soluble, 3 0.028531
NRP2 neuropilin 2 0.0264544
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0261278
NFE2L1 nuclear factor, erythroid 2-like 1 0.0248048
CAMSAP2 calmodulin regulated spectrin-associated protein family, member 2 0.02479
PCBP2 poly(rC) binding protein 2 0.0244645
SCARB2 scavenger receptor class B, member 2 0.0242997
ADM adrenomedullin 0.0239634
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0239325
STRIP2 striatin interacting protein 2 0.0236379
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0236255
LAMB1 laminin, beta 1 0.0235842
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0233511
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0233407
RNASE12 ribonuclease, RNase A family, 12 (non-active) 0.02243
DSTN destrin (actin depolymerizing factor) 0.0224211
LEF1 lymphoid enhancer-binding factor 1 0.0222668
RPS2 ribosomal protein S2 0.0222501
FRMD4A FERM domain containing 4A 0.022149
RHOBTB3 Rho-related BTB domain containing 3 0.021711
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain 0.0214958
PRRC2C proline-rich coiled-coil 2C 0.0211403
VEGFA vascular endothelial growth factor A 0.021122
CDH19 cadherin 19, type 2 0.021114
SOX4 SRY (sex determining region Y)-box 4 0.0210089
IFITM1 interferon induced transmembrane protein 1 0.0209917
SVIL supervillin 0.0209676
ZFP36 ZFP36 ring finger protein 0.0209525
MSN moesin 0.0201532
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0200621
UTRN utrophin 0.0195059
ARRDC3 arrestin domain containing 3 0.0194883
RPS12 ribosomal protein S12 0.0194784
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0192701
ADAR adenosine deaminase, RNA-specific 0.019081
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 0.0189913
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0189157
RPL37A ribosomal protein L37a 0.0188897
SON SON DNA binding protein 0.0188461
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.0187267
RCAN1 regulator of calcineurin 1 0.018612
YBX1 Y box binding protein 1 0.0185725
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0185087
HMGA2 high mobility group AT-hook 2 0.0184695
BHLHE40 basic helix-loop-helix family, member e40 0.0183484
DST dystonin 0.0183388
PHC2 polyhomeotic homolog 2 (Drosophila) 0.0181503
PLEC plectin 0.0177454
RHBDF2 rhomboid 5 homolog 2 (Drosophila) 0.0175543
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0174569
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0173724
BAZ1B bromodomain adjacent to zinc finger domain, 1B 0.0171374
SET SET nuclear proto-oncogene 0.0170679
WWOX WW domain containing oxidoreductase 0.0169771
SETBP1 SET binding protein 1 0.0168242
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 0.0168052
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0167648
PLEKHA4 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 0.0166464
BOD1L1 biorientation of chromosomes in cell division 1-like 1 0.0164776
GAS7 growth arrest-specific 7 0.0164371
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0164357
FLNA filamin A, alpha 0.0163376
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0162139

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.297766
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.229681
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0977276
NDRG1 N-myc downstream regulated 1 -0.0938969
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0906927
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0886303
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0868294
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0865785
VGF VGF nerve growth factor inducible -0.0843476
FNDC3B fibronectin type III domain containing 3B -0.0793804
NLGN1 neuroligin 1 -0.0787705
PTK2 protein tyrosine kinase 2 -0.0779245
PHF21A PHD finger protein 21A -0.0773821
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0772776
CDC73 cell division cycle 73 -0.0759612
FYN FYN proto-oncogene, Src family tyrosine kinase -0.0736581
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.0692657
NBAS neuroblastoma amplified sequence -0.0679013
KMT2E lysine (K)-specific methyltransferase 2E -0.0664957
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0661869
TRIM2 tripartite motif containing 2 -0.0617865
TBC1D22A TBC1 domain family, member 22A -0.0600037
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0599058
GDF15 growth differentiation factor 15 -0.058097
NAMPT nicotinamide phosphoribosyltransferase -0.0577192
PTTG1IP pituitary tumor-transforming 1 interacting protein -0.0575134
KMT2C lysine (K)-specific methyltransferase 2C -0.0566078
KIRREL1 kirre like nephrin family adhesion molecule 1 -0.0555416
RHEB Ras homolog enriched in brain -0.0553808
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0552174
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) -0.0549904
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase -0.0530292
IFRD1 interferon-related developmental regulator 1 -0.0524271
SRPK2 SRSF protein kinase 2 -0.0514421
TMEM123 transmembrane protein 123 -0.0510362
KDM5B lysine (K)-specific demethylase 5B -0.0491736
FMNL2 formin-like 2 -0.0489254
UBE2H ubiquitin-conjugating enzyme E2H -0.048559
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.047764
SCFD2 sec1 family domain containing 2 -0.0471341
HELZ helicase with zinc finger -0.0471171
CUX1 cut-like homeobox 1 -0.0466132
COPA coatomer protein complex, subunit alpha -0.046568
GPC6 glypican 6 -0.0456857
CHSY1 chondroitin sulfate synthase 1 -0.0448509
RNF24 ring finger protein 24 -0.0445959
RFX7 regulatory factor X, 7 -0.0436486
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0429486
INSIG1 insulin induced gene 1 -0.0425385
MEF2A myocyte enhancer factor 2A -0.042538
COG5 component of oligomeric golgi complex 5 -0.0422288
NPR2 natriuretic peptide receptor 2 -0.042177
CDK14 cyclin-dependent kinase 14 -0.0416521
MARK3 MAP/microtubule affinity-regulating kinase 3 -0.0411603
TPD52 tumor protein D52 -0.0404903
RAB7A RAB7A, member RAS oncogene family -0.0402269
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) -0.0399469
RYBP RING1 and YY1 binding protein -0.039561
ZNF292 zinc finger protein 292 -0.0395388
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0395217
PDK3 pyruvate dehydrogenase kinase, isozyme 3 -0.0394554
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.0394472
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0394368
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0387207
CD109 CD109 molecule -0.0386334
IGF1R insulin-like growth factor 1 receptor -0.0382714
GNAS GNAS complex locus -0.0382622
TAC4 tachykinin 4 (hemokinin) -0.0375629
ARID2 AT rich interactive domain 2 (ARID, RFX-like) -0.037519
FUS FUS RNA binding protein -0.0372852
MAML3 mastermind-like 3 (Drosophila) -0.0365653
OXR1 oxidation resistance 1 -0.036519
DENND1A DENN/MADD domain containing 1A -0.0364987
WSB1 WD repeat and SOCS box containing 1 -0.0360229
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit -0.0354325
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 -0.0350394
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0349962
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.034896
ZMYND8 zinc finger, MYND-type containing 8 -0.0344713
WDR45B WD repeat domain 45B -0.0340722
EGR1 early growth response 1 -0.0339965
ANKRD11 ankyrin repeat domain 11 -0.0336037
EPS8 epidermal growth factor receptor pathway substrate 8 -0.033276
NCOA7 nuclear receptor coactivator 7 -0.0331942
HSPG2 heparan sulfate proteoglycan 2 -0.0329885
RLF rearranged L-myc fusion -0.0329619
NUP58 nucleoporin 58 -0.032958
FOXJ3 forkhead box J3 -0.0325457
CALU calumenin -0.0318461
PRELID2 PRELI domain containing 2 -0.0315323
PDIA4 protein disulfide isomerase family A, member 4 -0.031122
PTPRM protein tyrosine phosphatase, receptor type, M -0.031114
PACSIN2 protein kinase C and casein kinase substrate in neurons 2 -0.0306678
RAB1A RAB1A, member RAS oncogene family -0.0306511
NAV2 neuron navigator 2 -0.03041
TMEM263 transmembrane protein 263 -0.0298088
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) -0.0296557
BACE2 beta-site APP-cleaving enzyme 2 -0.0293328
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0290448
PTPRJ protein tyrosine phosphatase, receptor type, J -0.0288555