RMC-6236_COLO 205 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description RMC-6236 perturbation in COLO 205 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the RMC-6236_COLO 205 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
LCN2 lipocalin 2 0.16851
FTH1 ferritin, heavy polypeptide 1 0.143885
B2M beta-2-microglobulin 0.132544
LMO7 LIM domain 7 0.113496
RNF213 ring finger protein 213 0.113063
EXT1 exostosin glycosyltransferase 1 0.107926
MACC1 metastasis associated in colon cancer 1 0.103266
EPSTI1 epithelial stromal interaction 1 (breast) 0.0893995
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0845187
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0798641
GCLC glutamate-cysteine ligase, catalytic subunit 0.0773168
MUC13 mucin 13, cell surface associated 0.0648111
DST dystonin 0.0642313
AKAP13 A kinase (PRKA) anchor protein 13 0.0602226
ETV6 ets variant 6 0.0587118
DUSP16 dual specificity phosphatase 16 0.0581542
ATP10B ATPase, class V, type 10B 0.0563234
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 0.0539327
PDZD8 PDZ domain containing 8 0.0504622
SIPA1L2 signal-induced proliferation-associated 1 like 2 0.0500822
TMC5 transmembrane channel-like 5 0.0493972
MX2 MX dynamin-like GTPase 2 0.0489525
MX1 MX dynamin-like GTPase 1 0.0484765
LURAP1L leucine rich adaptor protein 1-like 0.0477976
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 0.046205
KLF5 Kruppel-like factor 5 (intestinal) 0.0458754
FNIP2 folliculin interacting protein 2 0.0434193
SFTPA2 surfactant protein A2 0.0431193
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0416891
SPATS2L spermatogenesis associated, serine-rich 2-like 0.0407217
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa 0.0403624
ALCAM activated leukocyte cell adhesion molecule 0.039705
TRIM2 tripartite motif containing 2 0.0395512
LIMA1 LIM domain and actin binding 1 0.0384842
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.0379204
RABGAP1L RAB GTPase activating protein 1-like 0.0378491
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 0.037502
FTL ferritin, light polypeptide 0.0364571
ADAR adenosine deaminase, RNA-specific 0.0355244
SRRM2 serine/arginine repetitive matrix 2 0.0347921
PARP9 poly (ADP-ribose) polymerase family, member 9 0.0345204
CATSPERB catsper channel auxiliary subunit beta 0.0342473
SERINC5 serine incorporator 5 0.0342157
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0336838
KYNU kynureninase 0.0331466
CTSB cathepsin B 0.0324913
LOC102724023 ES1 protein homolog, mitochondrial 0.0308948
GULP1 GULP, engulfment adaptor PTB domain containing 1 0.030697
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.0303494
MTUS1 microtubule associated tumor suppressor 1 0.0300301
PRRC2C proline-rich coiled-coil 2C 0.0291955
IFIT1 interferon-induced protein with tetratricopeptide repeats 1 0.0284638
SAMD9 sterile alpha motif domain containing 9 0.0284179
RBM47 RNA binding motif protein 47 0.0278821
NFE2L2 nuclear factor, erythroid 2-like 2 0.0278633
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 0.0275994
IFI6 interferon, alpha-inducible protein 6 0.0269147
OAS1 2'-5'-oligoadenylate synthetase 1, 40/46kDa 0.0268734
MYO5B myosin VB 0.0268717
TSC22D1 TSC22 domain family, member 1 0.026818
SIK3 SIK family kinase 3 0.0263091
EEF2 eukaryotic translation elongation factor 2 0.0260002
SYT1 synaptotagmin I 0.0252057
SP100 SP100 nuclear antigen 0.0247649
AOPEP aminopeptidase O (putative) 0.0246273
PTBP3 polypyrimidine tract binding protein 3 0.0245139
DPP4 dipeptidyl-peptidase 4 0.0243369
FAT1 FAT atypical cadherin 1 0.0241087
ZNF292 zinc finger protein 292 0.0239932
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0239685
RND3 Rho family GTPase 3 0.0236058
KTN1 kinectin 1 (kinesin receptor) 0.0232671
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0227873
SET SET nuclear proto-oncogene 0.0227165
ARHGAP5 Rho GTPase activating protein 5 0.022467
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0223412
IFNGR1 interferon gamma receptor 1 0.0222194
CREB3L2 cAMP responsive element binding protein 3-like 2 0.0220702
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.02205
PTGR1 prostaglandin reductase 1 0.0219091
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 0.0216899
SLC40A1 solute carrier family 40 (iron-regulated transporter), member 1 0.0216182
LPP LIM domain containing preferred translocation partner in lipoma 0.0213267
TXNRD1 thioredoxin reductase 1 0.0211265
DSTN destrin (actin depolymerizing factor) 0.0210711
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0208515
EPS8 epidermal growth factor receptor pathway substrate 8 0.0207964
RPL7L1 ribosomal protein L7-like 1 0.0207907
HKDC1 hexokinase domain containing 1 0.0206972
MAP3K1 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase 0.0206955
CLOCK clock circadian regulator 0.0205995
DSPP dentin sialophosphoprotein 0.0205397
SOX9 SRY (sex determining region Y)-box 9 0.0204662
YAP1 Yes-associated protein 1 0.0202995
LYN LYN proto-oncogene, Src family tyrosine kinase 0.0202642
ATP9A ATPase, class II, type 9A 0.0201746
ANXA4 annexin A4 0.0201387
PCBP2 poly(rC) binding protein 2 0.0199318
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0198698
NPEPPS aminopeptidase puromycin sensitive 0.0196145

decreased expression

Symbol Name Standardized Value
ANXA2 annexin A2 -0.158784
EGR1 early growth response 1 -0.151742
TPT1 tumor protein, translationally-controlled 1 -0.142123
INTS6 integrator complex subunit 6 -0.140792
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 -0.115136
EZR ezrin -0.105758
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 -0.0958982
SQSTM1 sequestosome 1 -0.0876661
ANKRD10 ankyrin repeat domain 10 -0.08614
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 -0.0859711
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0858853
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0827057
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0824389
GMDS GDP-mannose 4,6-dehydratase -0.0756554
TM4SF19 transmembrane 4 L six family member 19 -0.0710647
NDRG1 N-myc downstream regulated 1 -0.0709482
MCTP1 multiple C2 domains, transmembrane 1 -0.0676662
SEC31A SEC31 homolog A (S. cerevisiae) -0.0674649
SDC4 syndecan 4 -0.0669553
RAB7A RAB7A, member RAS oncogene family -0.0643177
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0640143
EFNB2 ephrin-B2 -0.0615277
BTBD9 BTB (POZ) domain containing 9 -0.0568864
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B -0.0566582
FOS FBJ murine osteosarcoma viral oncogene homolog -0.0553611
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 -0.05511
TNS4 tensin 4 -0.0546491
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0538858
VCL vinculin -0.0537596
PRKCA protein kinase C, alpha -0.0532336
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) -0.0522155
LAMA4 laminin, alpha 4 -0.0515811
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b -0.0514617
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0509608
AREG amphiregulin -0.0504704
MCL1 myeloid cell leukemia 1 -0.0501751
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0492276
NPSR1 neuropeptide S receptor 1 -0.049041
MORF4L2 mortality factor 4 like 2 -0.0488895
HM13 histocompatibility (minor) 13 -0.0480625
SHB Src homology 2 domain containing adaptor protein B -0.0471027
GOLGB1 golgin B1 -0.0469001
ITGA6 integrin, alpha 6 -0.0463808
ASPH aspartate beta-hydroxylase -0.0463222
AHI1 Abelson helper integration site 1 -0.0458362
IRF1 interferon regulatory factor 1 -0.0454604
HDLBP high density lipoprotein binding protein -0.0443895
FNDC3B fibronectin type III domain containing 3B -0.0442758
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0439923
UFM1 ubiquitin-fold modifier 1 -0.0437994
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0437773
ZMYND8 zinc finger, MYND-type containing 8 -0.0432066
PKM pyruvate kinase, muscle -0.0422751
TM4SF1 transmembrane 4 L six family member 1 -0.0421841
BAIAP2L1 BAI1-associated protein 2-like 1 -0.0413027
RAB1A RAB1A, member RAS oncogene family -0.0411599
PLSCR2 phospholipid scramblase 2 -0.0392605
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa -0.0391198
VPS37B vacuolar protein sorting 37 homolog B (S. cerevisiae) -0.0390905
COG6 component of oligomeric golgi complex 6 -0.038617
HLA-B major histocompatibility complex, class I, B -0.0375542
S100A10 S100 calcium binding protein A10 -0.0370904
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) -0.0367323
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0366654
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0363555
RBM39 RNA binding motif protein 39 -0.0358254
RALY RALY heterogeneous nuclear ribonucleoprotein -0.0357294
FOSL1 FOS-like antigen 1 -0.035696
TUFT1 tuftelin 1 -0.0355434
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0349273
LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 -0.0346572
BLZF1 basic leucine zipper nuclear factor 1 -0.0343279
CALU calumenin -0.0342049
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -0.0340307
LRRC8A leucine rich repeat containing 8 family, member A -0.0335543
PIBF1 progesterone immunomodulatory binding factor 1 -0.0335311
MBNL2 muscleblind-like splicing regulator 2 -0.0334013
SPAG9 sperm associated antigen 9 -0.033311
DIS3 DIS3 exosome endoribonuclease and 3'-5' exoribonuclease -0.0330769
DNAJC15 DnaJ (Hsp40) homolog, subfamily C, member 15 -0.0327352
VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 -0.0327056
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0326754
ATP2C2 ATPase, Ca++ transporting, type 2C, member 2 -0.0325955
SEC24D SEC24 family member D -0.0321453
LDLR low density lipoprotein receptor -0.0321026
POU2F2 POU class 2 homeobox 2 -0.0320434
ANKRD17 ankyrin repeat domain 17 -0.031927
PLAUR plasminogen activator, urokinase receptor -0.0318245
ZCCHC7 zinc finger, CCHC domain containing 7 -0.03178
IRS2 insulin receptor substrate 2 -0.0317367
ACTN4 actinin, alpha 4 -0.0315911
ZMYM2 zinc finger, MYM-type 2 -0.0315171
MON2 MON2 homolog (S. cerevisiae) -0.0311851
MAML2 mastermind-like 2 (Drosophila) -0.0311688
RSAD2 radical S-adenosyl methionine domain containing 2 -0.0311559
SDCBP2 syndecan binding protein (syntenin) 2 -0.0310336
GNAS GNAS complex locus -0.0310054
SLC16A3 solute carrier family 16 (monocarboxylate transporter), member 3 -0.0305272
TM9SF2 transmembrane 9 superfamily member 2 -0.0304948
ARF4 ADP-ribosylation factor 4 -0.0302428