RMC-6236_HS-578T Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description RMC-6236 perturbation in HS-578T cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the RMC-6236_HS-578T drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
IGFBP3 insulin-like growth factor binding protein 3 0.24698
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.127483
FN1 fibronectin 1 0.117822
FTH1 ferritin, heavy polypeptide 1 0.117654
EXT1 exostosin glycosyltransferase 1 0.105353
PSD3 pleckstrin and Sec7 domain containing 3 0.0946992
NKAIN3 Na+/K+ transporting ATPase interacting 3 0.0756745
CD44 CD44 molecule (Indian blood group) 0.0705414
VIM vimentin 0.0649258
ZBTB20 zinc finger and BTB domain containing 20 0.0631402
ENO1 enolase 1, (alpha) 0.0577275
TIMP3 TIMP metallopeptidase inhibitor 3 0.0528176
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0480471
TPM4 tropomyosin 4 0.0467682
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0452079
MYH9 myosin, heavy chain 9, non-muscle 0.0447294
INHBA inhibin, beta A 0.044593
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0424388
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0410842
TMSB4X thymosin beta 4, X-linked 0.0404255
IFI6 interferon, alpha-inducible protein 6 0.040301
CTSB cathepsin B 0.0398267
FBN1 fibrillin 1 0.039424
GOLGB1 golgin B1 0.037536
IGFBP7 insulin-like growth factor binding protein 7 0.0369225
LDHA lactate dehydrogenase A 0.0351224
PDLIM5 PDZ and LIM domain 5 0.0345983
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.034598
EEF2 eukaryotic translation elongation factor 2 0.0342412
SP100 SP100 nuclear antigen 0.0335889
CANX calnexin 0.0333833
ALCAM activated leukocyte cell adhesion molecule 0.0323123
AHNAK AHNAK nucleoprotein 0.031735
MBNL1 muscleblind-like splicing regulator 1 0.0315637
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.0305749
SAMD9 sterile alpha motif domain containing 9 0.029721
DPYSL3 dihydropyrimidinase-like 3 0.0288982
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0283427
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 0.0279945
PLEC plectin 0.0278561
VCL vinculin 0.0276231
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0274853
CALR calreticulin 0.0271695
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 0.0268841
STC1 stanniocalcin 1 0.0264511
B2M beta-2-microglobulin 0.0261735
WWTR1 WW domain containing transcription regulator 1 0.0261298
HDAC9 histone deacetylase 9 0.0259745
ATXN1 ataxin 1 0.0259084
COL1A1 collagen, type I, alpha 1 0.0255317
RIGI RNA sensor RIG-I 0.0254627
ERRFI1 ERBB receptor feedback inhibitor 1 0.0250194
LGALS1 lectin, galactoside-binding, soluble, 1 0.0248389
EIF1 eukaryotic translation initiation factor 1 0.0246762
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0245544
IL6 interleukin 6 0.0243271
SFTPA2 surfactant protein A2 0.0238694
MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 0.0235558
ZBTB38 zinc finger and BTB domain containing 38 0.0232783
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0227957
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0223556
LPP LIM domain containing preferred translocation partner in lipoma 0.0222364
LTBP1 latent transforming growth factor beta binding protein 1 0.0221859
CALD1 caldesmon 1 0.0220245
COL3A1 collagen, type III, alpha 1 0.0219565
APP amyloid beta (A4) precursor protein 0.02193
PLSCR1 phospholipid scramblase 1 0.021789
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0217316
GLIS3 GLIS family zinc finger 3 0.021731
ASPH aspartate beta-hydroxylase 0.0215336
NAV1 neuron navigator 1 0.0214191
FAM107B family with sequence similarity 107, member B 0.0213151
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.021245
MAP1B microtubule-associated protein 1B 0.0209786
MX2 MX dynamin-like GTPase 2 0.0206388
PALLD palladin, cytoskeletal associated protein 0.020305
MT2A metallothionein 2A 0.02026
KLF6 Kruppel-like factor 6 0.0199569
OSMR oncostatin M receptor 0.0198896
ATF4 activating transcription factor 4 0.0197272
CFB complement factor B 0.019527
HSPA8 heat shock 70kDa protein 8 0.019101
LHFPL2 lipoma HMGIC fusion partner-like 2 0.0187168
CNTN5 contactin 5 0.0185965
RPS3 ribosomal protein S3 0.0185394
HLA-E major histocompatibility complex, class I, E 0.0185353
PDIA5 protein disulfide isomerase family A, member 5 0.018312
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0182783
RACK1 receptor for activated C kinase 1 0.0182528
RPL26 ribosomal protein L26 0.0181021
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.0179595
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0178026
AKAP9 A kinase (PRKA) anchor protein 9 0.017702
HLA-B major histocompatibility complex, class I, B 0.0171763
MLF1 myeloid leukemia factor 1 0.0170338
RPS8 ribosomal protein S8 0.0169378
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0165907
IFITM3 interferon induced transmembrane protein 3 0.0165719
KIAA1217 KIAA1217 0.0165406
IFI44L interferon-induced protein 44-like 0.0163246

decreased expression

Symbol Name Standardized Value
NDRG1 N-myc downstream regulated 1 -0.173632
CADM1 cell adhesion molecule 1 -0.0930269
ATP13A3 ATPase type 13A3 -0.0755742
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0676026
TRIO trio Rho guanine nucleotide exchange factor -0.0648806
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0641245
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0591486
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0544402
PDE10A phosphodiesterase 10A -0.0491841
TSC22D2 TSC22 domain family, member 2 -0.0446771
ZNF292 zinc finger protein 292 -0.044655
QKI QKI, KH domain containing, RNA binding -0.0442324
KMT2E lysine (K)-specific methyltransferase 2E -0.0411268
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0410015
USP3 ubiquitin specific peptidase 3 -0.0408165
NAMPT nicotinamide phosphoribosyltransferase -0.0383748
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 -0.0376179
TRAM1 translocation associated membrane protein 1 -0.0329433
SPAG9 sperm associated antigen 9 -0.0327722
TFG TRK-fused gene -0.0310525
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0294362
ZFAND3 zinc finger, AN1-type domain 3 -0.0292537
GOLGA4 golgin A4 -0.0288257
SETD5 SET domain containing 5 -0.0284669
COL7A1 collagen, type VII, alpha 1 -0.0278282
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.02765
WSB1 WD repeat and SOCS box containing 1 -0.0271395
COL6A1 collagen, type VI, alpha 1 -0.0269283
POSTN periostin, osteoblast specific factor -0.0266552
RYBP RING1 and YY1 binding protein -0.0266068
ELL2 elongation factor, RNA polymerase II, 2 -0.0264887
UBA6 ubiquitin-like modifier activating enzyme 6 -0.0263876
ADAM9 ADAM metallopeptidase domain 9 -0.0260824
MARCHF6 membrane associated ring-CH-type finger 6 -0.0259803
RNF145 ring finger protein 145 -0.0250633
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0249409
PDE8A phosphodiesterase 8A -0.0243484
NPEPPS aminopeptidase puromycin sensitive -0.0239597
RTN4 reticulon 4 -0.0234778
HMGA1 high mobility group AT-hook 1 -0.0234313
RHEB Ras homolog enriched in brain -0.0233444
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A -0.0231073
UGCG UDP-glucose ceramide glucosyltransferase -0.0228767
ANKRD11 ankyrin repeat domain 11 -0.0226885
RLF rearranged L-myc fusion -0.0226871
COPA coatomer protein complex, subunit alpha -0.0224308
HELZ helicase with zinc finger -0.0224176
RAB6A RAB6A, member RAS oncogene family -0.0218941
SLC39A14 solute carrier family 39 (zinc transporter), member 14 -0.0218692
RBM39 RNA binding motif protein 39 -0.0217945
GARS1 glycyl-tRNA synthetase 1 -0.02175
CLINT1 clathrin interactor 1 -0.0217162
CD109 CD109 molecule -0.0216923
COL6A3 collagen, type VI, alpha 3 -0.021596
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b -0.0214751
ADAM17 ADAM metallopeptidase domain 17 -0.0212782
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 -0.021138
HILPDA hypoxia inducible lipid droplet-associated -0.021102
PTK2 protein tyrosine kinase 2 -0.020758
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0207152
FOXJ3 forkhead box J3 -0.0206054
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0205579
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0205368
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0204702
CDH13 cadherin 13 -0.0204321
TENT4A terminal nucleotidyltransferase 4A -0.0201684
AZIN1 antizyme inhibitor 1 -0.0200339
RAB1A RAB1A, member RAS oncogene family -0.0200148
CAMTA1 calmodulin binding transcription activator 1 -0.0199771
SEPTIN7 septin 7 -0.0197668
LOX lysyl oxidase -0.0196666
MRPS6 mitochondrial ribosomal protein S6 -0.0194004
GNAS GNAS complex locus -0.0193526
CCNL1 cyclin L1 -0.019276
JARID2 jumonji, AT rich interactive domain 2 -0.0192683
SRP54 signal recognition particle 54kDa -0.0192481
PFN1 profilin 1 -0.0191786
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit -0.0191722
HP1BP3 heterochromatin protein 1, binding protein 3 -0.018789
TMEM165 transmembrane protein 165 -0.018676
PRRC1 proline-rich coiled-coil 1 -0.0186127
IER3 immediate early response 3 -0.0185069
PTP4A2 protein tyrosine phosphatase type IVA, member 2 -0.0182782
LMAN1 lectin, mannose-binding, 1 -0.0181188
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0178736
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha -0.0178297
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0176815
RYK receptor-like tyrosine kinase -0.0176805
KCTD9 potassium channel tetramerization domain containing 9 -0.0176627
KDM3A lysine (K)-specific demethylase 3A -0.0175078
MATR3 matrin 3 -0.0174785
HOOK2 hook microtubule-tethering protein 2 -0.0174643
ACSL3 acyl-CoA synthetase long-chain family member 3 -0.0174512
WAC WW domain containing adaptor with coiled-coil -0.0173701
RASA2 RAS p21 protein activator 2 -0.0167979
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) -0.0165877
COL6A2 collagen, type VI, alpha 2 -0.0164442
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 -0.0164406
PTPRJ protein tyrosine phosphatase, receptor type, J -0.0163371
SQLE squalene epoxidase -0.0163342