RMC-6236_HT-29 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description RMC-6236 perturbation in HT-29 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the RMC-6236_HT-29 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FTH1 ferritin, heavy polypeptide 1 0.187934
LMO7 LIM domain 7 0.152834
EXT1 exostosin glycosyltransferase 1 0.143193
TNFRSF21 tumor necrosis factor receptor superfamily, member 21 0.0874974
ERRFI1 ERBB receptor feedback inhibitor 1 0.0800982
SMAD3 SMAD family member 3 0.0741983
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0694985
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0667263
PELI1 pellino E3 ubiquitin protein ligase 1 0.0623748
ZSWIM6 zinc finger, SWIM-type containing 6 0.0601326
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 0.0596957
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0577568
TJP1 tight junction protein 1 0.0571639
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 0.0562103
FOSB FBJ murine osteosarcoma viral oncogene homolog B 0.0542166
PDLIM5 PDZ and LIM domain 5 0.0532232
KLF5 Kruppel-like factor 5 (intestinal) 0.0502161
NTN4 netrin 4 0.0501138
PTPRK protein tyrosine phosphatase, receptor type, K 0.05009
LOC102724023 ES1 protein homolog, mitochondrial 0.04874
NCEH1 neutral cholesterol ester hydrolase 1 0.0483225
TLE4 transducin-like enhancer of split 4 0.0454175
NFE2L2 nuclear factor, erythroid 2-like 2 0.0451965
ADARB1 adenosine deaminase, RNA-specific, B1 0.0449358
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0433766
EXPH5 exophilin 5 0.0429256
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.042483
DPP4 dipeptidyl-peptidase 4 0.0418839
ADGRF1 adhesion G protein-coupled receptor F1 0.0409169
ATXN1 ataxin 1 0.0393973
AREG amphiregulin 0.038116
MARCHF3 membrane associated ring-CH-type finger 3 0.0370694
VCL vinculin 0.0368544
EEF2 eukaryotic translation elongation factor 2 0.0365713
AXIN2 axin 2 0.0363202
LURAP1L leucine rich adaptor protein 1-like 0.0361342
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0356336
ARHGAP42 Rho GTPase activating protein 42 0.0353029
B2M beta-2-microglobulin 0.0352855
RPS12 ribosomal protein S12 0.0352074
EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 0.0349103
RPS3 ribosomal protein S3 0.0348544
PLK2 polo-like kinase 2 0.0346809
DUSP16 dual specificity phosphatase 16 0.0340957
MYOF myoferlin 0.0339162
KLF6 Kruppel-like factor 6 0.0337241
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 0.0334688
PGCKA1 PDCD10 and GCKIII kinases associated 1 0.0327264
MACC1 metastasis associated in colon cancer 1 0.0305725
CCNYL1 cyclin Y-like 1 0.0302828
TMC5 transmembrane channel-like 5 0.0301421
SIK3 SIK family kinase 3 0.0297466
SPATS2L spermatogenesis associated, serine-rich 2-like 0.0295891
MYH14 myosin, heavy chain 14, non-muscle 0.0294301
FAT1 FAT atypical cadherin 1 0.0293157
MYO5B myosin VB 0.0288592
RND3 Rho family GTPase 3 0.0281717
NEBL nebulette 0.0274481
RPS2 ribosomal protein S2 0.0272485
AFF1 AF4/FMR2 family, member 1 0.0269346
SHROOM3 shroom family member 3 0.0267884
GLCCI1 glucocorticoid induced 1 0.0267434
PDZD8 PDZ domain containing 8 0.0265198
INTS6 integrator complex subunit 6 0.026459
WEE1 WEE1 G2 checkpoint kinase 0.0264355
ERN1 endoplasmic reticulum to nucleus signaling 1 0.0264057
FHL2 four and a half LIM domains 2 0.0256334
RPS8 ribosomal protein S8 0.0253792
EREG epiregulin 0.0253747
ETV6 ets variant 6 0.0252715
SORL1 sortilin-related receptor, L(DLR class) A repeats containing 0.0251952
MYZAP myocardial zonula adherens protein 0.0251848
PDE4D phosphodiesterase 4D, cAMP-specific 0.0245135
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0244887
PRKN parkin RBR E3 ubiquitin protein ligase 0.0243501
SRRM2 serine/arginine repetitive matrix 2 0.0243256
LCN2 lipocalin 2 0.0242997
DST dystonin 0.0240524
SAMD4A sterile alpha motif domain containing 4A 0.0239376
RPS17 ribosomal protein S17 0.0235108
PRR5L proline rich 5 like 0.0231039
RFX2 regulatory factor X, 2 (influences HLA class II expression) 0.0229131
FAM107B family with sequence similarity 107, member B 0.0227716
PCBP2 poly(rC) binding protein 2 0.0218782
SGMS2 sphingomyelin synthase 2 0.0215233
RPL23 ribosomal protein L23 0.0214517
BIRC3 baculoviral IAP repeat containing 3 0.0211811
ARHGAP29 Rho GTPase activating protein 29 0.021068
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0208372
ATF3 activating transcription factor 3 0.0203711
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0199419
RASEF RAS and EF-hand domain containing 0.0196285
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0187283
CAMK1D calcium/calmodulin-dependent protein kinase ID 0.018707
PARD3B par-3 family cell polarity regulator beta 0.0186987
RPL3 ribosomal protein L3 0.0183471
RACK1 receptor for activated C kinase 1 0.0182832
MYADM myeloid-associated differentiation marker 0.0180012
WWOX WW domain containing oxidoreductase 0.0177022
RPL9 ribosomal protein L9 0.0176543

decreased expression

Symbol Name Standardized Value
ANXA2 annexin A2 -0.114837
NDRG1 N-myc downstream regulated 1 -0.111851
ACTN4 actinin, alpha 4 -0.107385
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.103052
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0973896
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0963812
ITPKC inositol-trisphosphate 3-kinase C -0.0908497
SLC45A4 solute carrier family 45, member 4 -0.0902759
NECTIN2 nectin cell adhesion molecule 2 -0.08818
WASF2 WAS protein family, member 2 -0.0843682
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0812687
LYZ lysozyme -0.0774451
PTMA prothymosin, alpha -0.0766766
PTK2 protein tyrosine kinase 2 -0.074354
ACACA acetyl-CoA carboxylase alpha -0.0740879
PLAUR plasminogen activator, urokinase receptor -0.0721016
NF1 neurofibromin 1 -0.0706394
TXNRD1 thioredoxin reductase 1 -0.0680599
GARS1 glycyl-tRNA synthetase 1 -0.0679678
RAD21 RAD21 homolog (S. pombe) -0.0630144
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 -0.0629573
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 -0.058989
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0579398
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0569239
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b -0.0568419
BIRC6 baculoviral IAP repeat containing 6 -0.0561226
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0552106
PDIA3 protein disulfide isomerase family A, member 3 -0.0516415
NIBAN2 niban apoptosis regulator 2 -0.0514779
SAMD12 sterile alpha motif domain containing 12 -0.0514168
STK24 serine/threonine kinase 24 -0.0511582
PATJ PATJ crumbs cell polarity complex component -0.0509551
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.0509379
S100A6 S100 calcium binding protein A6 -0.050011
KRT8 keratin 8, type II -0.0499253
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 -0.0498909
DIAPH2 diaphanous-related formin 2 -0.0496196
KMT2C lysine (K)-specific methyltransferase 2C -0.0491128
ITGA6 integrin, alpha 6 -0.047726
TPT1 tumor protein, translationally-controlled 1 -0.0476978
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B -0.0476047
LDHA lactate dehydrogenase A -0.0470245
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0464946
ZMYM2 zinc finger, MYM-type 2 -0.0457306
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.045493
KLF3 Kruppel-like factor 3 (basic) -0.0453586
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0450744
PARP4 poly (ADP-ribose) polymerase family, member 4 -0.0448695
TMSB10 thymosin beta 10 -0.0447834
LAMA4 laminin, alpha 4 -0.0446148
DGKH diacylglycerol kinase, eta -0.0445032
EZR ezrin -0.0442626
GMDS GDP-mannose 4,6-dehydratase -0.0439366
TM9SF3 transmembrane 9 superfamily member 3 -0.0435626
EGR1 early growth response 1 -0.043107
ZMYND8 zinc finger, MYND-type containing 8 -0.0428136
SQSTM1 sequestosome 1 -0.0425698
RTN4 reticulon 4 -0.0425055
RAB1A RAB1A, member RAS oncogene family -0.0416149
TAS2R14 taste receptor, type 2, member 14 -0.0409793
NAMPT nicotinamide phosphoribosyltransferase -0.0409193
ZFAND3 zinc finger, AN1-type domain 3 -0.0408678
AGR2 anterior gradient 2 -0.0398987
ACSL3 acyl-CoA synthetase long-chain family member 3 -0.0396155
NPC1 Niemann-Pick disease, type C1 -0.0394013
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0393499
THOC2 THO complex 2 -0.0393411
HDLBP high density lipoprotein binding protein -0.0389621
COG5 component of oligomeric golgi complex 5 -0.0380497
SDC4 syndecan 4 -0.0380324
PICALM phosphatidylinositol binding clathrin assembly protein -0.0377072
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0371981
SBF2 SET binding factor 2 -0.0367012
ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 -0.036663
USP34 ubiquitin specific peptidase 34 -0.0366449
ZNF292 zinc finger protein 292 -0.036493
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha -0.0363738
KLF10 Kruppel-like factor 10 -0.036352
RALY RALY heterogeneous nuclear ribonucleoprotein -0.036085
IARS1 isoleucyl-tRNA synthetase 1 -0.035808
ANKRD10 ankyrin repeat domain 10 -0.0355917
ST14 suppression of tumorigenicity 14 (colon carcinoma) -0.035505
PGK1 phosphoglycerate kinase 1 -0.0351645
BAIAP2L1 BAI1-associated protein 2-like 1 -0.0348329
LGALS4 lectin, galactoside-binding, soluble, 4 -0.0338964
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) -0.0337115
CLTC clathrin, heavy chain (Hc) -0.0335595
RAB7A RAB7A, member RAS oncogene family -0.0332427
RBM39 RNA binding motif protein 39 -0.0329968
WWC1 WW and C2 domain containing 1 -0.0327925
GCC2 GRIP and coiled-coil domain containing 2 -0.0323383
ACTG1 actin gamma 1 -0.0322947
BBX bobby sox homolog (Drosophila) -0.0318919
AHNAK AHNAK nucleoprotein -0.0317982
RRBP1 ribosome binding protein 1 -0.0316233
JUP junction plakoglobin -0.0315324
TRPS1 trichorhinophalangeal syndrome I -0.0314199
SEC31A SEC31 homolog A (S. cerevisiae) -0.0311849
FOS FBJ murine osteosarcoma viral oncogene homolog -0.0310651
DNM2 dynamin 2 -0.0310003