RMC-6236_KATO III Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description RMC-6236 perturbation in KATO III cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the RMC-6236_KATO III drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FTH1 ferritin, heavy polypeptide 1 0.215435
B2M beta-2-microglobulin 0.13218
LOC102724023 ES1 protein homolog, mitochondrial 0.122158
DSPP dentin sialophosphoprotein 0.0931137
LMO7 LIM domain 7 0.0911264
FTL ferritin, light polypeptide 0.0893165
TMC5 transmembrane channel-like 5 0.0849965
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.078893
EZR ezrin 0.0755888
RNF213 ring finger protein 213 0.0755738
MACC1 metastasis associated in colon cancer 1 0.0667121
LCN2 lipocalin 2 0.0629154
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 0.0552353
MYOF myoferlin 0.054583
ADGRF1 adhesion G protein-coupled receptor F1 0.0504212
PTPRK protein tyrosine phosphatase, receptor type, K 0.0481864
CLDN4 claudin 4 0.0473177
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0446932
MYH9 myosin, heavy chain 9, non-muscle 0.04403
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0437789
TXNIP thioredoxin interacting protein 0.0430772
IFI6 interferon, alpha-inducible protein 6 0.0429337
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0429026
GDA guanine deaminase 0.0422569
NUPR1 nuclear protein, transcriptional regulator, 1 0.0393699
EIF1 eukaryotic translation initiation factor 1 0.0390251
DSTN destrin (actin depolymerizing factor) 0.0390009
IFI27 interferon, alpha-inducible protein 27 0.0389984
TMEM45B transmembrane protein 45B 0.0383235
ATF5 activating transcription factor 5 0.0369384
TMSB4X thymosin beta 4, X-linked 0.0364297
SRRM2 serine/arginine repetitive matrix 2 0.0340613
APOL1 apolipoprotein L, 1 0.0319749
KLF6 Kruppel-like factor 6 0.0315076
ATF4 activating transcription factor 4 0.0312109
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0303542
KRT17 keratin 17, type I 0.0302279
SFTPA2 surfactant protein A2 0.0300651
RPS12 ribosomal protein S12 0.0300605
SAMD9 sterile alpha motif domain containing 9 0.0291202
MYH14 myosin, heavy chain 14, non-muscle 0.028522
RPS3 ribosomal protein S3 0.0276515
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 0.0276358
SP100 SP100 nuclear antigen 0.0274695
VEGFA vascular endothelial growth factor A 0.026185
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0257629
TJP1 tight junction protein 1 0.0247702
SOX4 SRY (sex determining region Y)-box 4 0.0243252
RUNX1 runt-related transcription factor 1 0.0241445
MUC13 mucin 13, cell surface associated 0.0233573
LURAP1L leucine rich adaptor protein 1-like 0.023213
PCBP2 poly(rC) binding protein 2 0.0231713
GALNT5 polypeptide N-acetylgalactosaminyltransferase 5 0.02308
RPL35A ribosomal protein L35a 0.0230679
RPS19 ribosomal protein S19 0.0230627
ALCAM activated leukocyte cell adhesion molecule 0.0226418
JUN jun proto-oncogene 0.0223798
KLF5 Kruppel-like factor 5 (intestinal) 0.0220543
EEF2 eukaryotic translation elongation factor 2 0.0216139
MX2 MX dynamin-like GTPase 2 0.0215184
HDAC9 histone deacetylase 9 0.0213236
CTSB cathepsin B 0.0210756
KIF16B kinesin family member 16B 0.0209028
NFE2L2 nuclear factor, erythroid 2-like 2 0.0207884
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa 0.020759
SET SET nuclear proto-oncogene 0.0204854
CLMN calmin (calponin-like, transmembrane) 0.0197823
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0195554
RPS2 ribosomal protein S2 0.0193225
MGAM2 maltase-glucoamylase 2 (putative) 0.0193112
UGCG UDP-glucose ceramide glucosyltransferase 0.0192406
GULP1 GULP, engulfment adaptor PTB domain containing 1 0.0192356
AKAP9 A kinase (PRKA) anchor protein 9 0.0188875
NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 0.0188815
HLA-E major histocompatibility complex, class I, E 0.0186606
MARCKS myristoylated alanine-rich protein kinase C substrate 0.0185603
IFITM3 interferon induced transmembrane protein 3 0.0185097
PCSK5 proprotein convertase subtilisin/kexin type 5 0.0184533
NFE2L1 nuclear factor, erythroid 2-like 1 0.0181281
RPS8 ribosomal protein S8 0.0178876
RPS6 ribosomal protein S6 0.01758
ATP8B1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 0.017562
MYZAP myocardial zonula adherens protein 0.017545
DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 0.0174537
MYADM myeloid-associated differentiation marker 0.0174427
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0170517
RHOB ras homolog family member B 0.016878
SLFN5 schlafen family member 5 0.0166712
RPS27 ribosomal protein S27 0.0166135
SCARB2 scavenger receptor class B, member 2 0.016598
ATF3 activating transcription factor 3 0.016515
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 0.0164458
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0164214
RFX2 regulatory factor X, 2 (influences HLA class II expression) 0.0162288
TMF1 TATA element modulatory factor 1 0.0161602
ATP9A ATPase, class II, type 9A 0.0161491
MX1 MX dynamin-like GTPase 1 0.0161301
DST dystonin 0.0160712
PCDH1 protocadherin 1 0.0158857
TCP11L2 t-complex 11, testis-specific-like 2 0.0158203

decreased expression

Symbol Name Standardized Value
GMDS GDP-mannose 4,6-dehydratase -0.249826
NPSR1 neuropeptide S receptor 1 -0.185747
MAML2 mastermind-like 2 (Drosophila) -0.150621
CEMIP cell migration inducing protein, hyaluronan binding -0.146823
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.130719
FGFR2 fibroblast growth factor receptor 2 -0.107022
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.106662
EMP1 epithelial membrane protein 1 -0.106577
FLNB filamin B, beta -0.0966247
HSD17B12 hydroxysteroid (17-beta) dehydrogenase 12 -0.0916745
ANXA2 annexin A2 -0.0893055
KRT8 keratin 8, type II -0.0863123
BCL2L1 BCL2-like 1 -0.0851985
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.083086
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa -0.081357
CEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) -0.0706754
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0691728
EHBP1 EH domain binding protein 1 -0.069005
TNIK TRAF2 and NCK interacting kinase -0.0682158
ACTN4 actinin, alpha 4 -0.0653647
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0598336
AGR2 anterior gradient 2 -0.0591315
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0582079
ASPH aspartate beta-hydroxylase -0.0561593
PRKCA protein kinase C, alpha -0.0557602
ATF7IP2 activating transcription factor 7 interacting protein 2 -0.0521241
KRT18 keratin 18, type I -0.0516313
ANLN anillin, actin binding protein -0.0507748
FNDC3B fibronectin type III domain containing 3B -0.0500825
FAT1 FAT atypical cadherin 1 -0.0500705
S100A10 S100 calcium binding protein A10 -0.0477124
S100A6 S100 calcium binding protein A6 -0.0475253
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.047408
TMEM123 transmembrane protein 123 -0.0446884
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0446379
CAPN8 calpain 8 -0.044409
ECT2 epithelial cell transforming 2 -0.0437408
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b -0.0436681
SHB Src homology 2 domain containing adaptor protein B -0.0428583
IARS1 isoleucyl-tRNA synthetase 1 -0.0427701
WWC1 WW and C2 domain containing 1 -0.0420483
ITGA6 integrin, alpha 6 -0.0412328
VMP1 vacuole membrane protein 1 -0.0407149
TMSB10 thymosin beta 10 -0.0405044
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 -0.0393949
BIRC6 baculoviral IAP repeat containing 6 -0.0391487
RAB1A RAB1A, member RAS oncogene family -0.0386796
PDIA4 protein disulfide isomerase family A, member 4 -0.0380331
RBM39 RNA binding motif protein 39 -0.037898
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0376288
ZFAND3 zinc finger, AN1-type domain 3 -0.037593
ANKRD10 ankyrin repeat domain 10 -0.0375923
PDIA3 protein disulfide isomerase family A, member 3 -0.0371719
YAP1 Yes-associated protein 1 -0.0367365
ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 -0.0363384
ANKRD11 ankyrin repeat domain 11 -0.0360636
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) -0.0358018
ACACA acetyl-CoA carboxylase alpha -0.03564
GNAS GNAS complex locus -0.0355392
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0353017
ITGB4 integrin, beta 4 -0.0352342
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 -0.034889
KLHL29 kelch-like family member 29 -0.0342465
DLG1 discs, large homolog 1 (Drosophila) -0.0340133
OSBPL3 oxysterol binding protein-like 3 -0.0339649
FBXO11 F-box protein 11 -0.0339422
ANO1 anoctamin 1, calcium activated chloride channel -0.0336568
MED13 mediator complex subunit 13 -0.0335551
CD46 CD46 molecule, complement regulatory protein -0.0332614
NF1 neurofibromin 1 -0.0332097
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0327676
MECOM MDS1 and EVI1 complex locus -0.0324517
TFRC transferrin receptor -0.0323203
ACSL3 acyl-CoA synthetase long-chain family member 3 -0.0321174
SULF2 sulfatase 2 -0.0309911
H1-0 H1.0 linker histone -0.0309145
TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 -0.0308323
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 -0.0308012
ATXN1 ataxin 1 -0.0301647
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0299332
ACSS2 acyl-CoA synthetase short-chain family member 2 -0.0297585
CLTC clathrin, heavy chain (Hc) -0.0294797
SMC4 structural maintenance of chromosomes 4 -0.0292093
UBASH3B ubiquitin associated and SH3 domain containing B -0.0292038
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0289512
COTL1 coactosin-like F-actin binding protein 1 -0.0288869
RAB7A RAB7A, member RAS oncogene family -0.0284481
TAS2R14 taste receptor, type 2, member 14 -0.0284038
CAMKMT calmodulin-lysine N-methyltransferase -0.0282296
VCL vinculin -0.02821
TMPRSS4 transmembrane protease, serine 4 -0.0279595
RPS24 ribosomal protein S24 -0.0278847
CTBP2 C-terminal binding protein 2 -0.0278618
DEK DEK proto-oncogene -0.0277961
EGR1 early growth response 1 -0.0275653
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 -0.0275613
ANKRD17 ankyrin repeat domain 17 -0.0275478
GLG1 golgi glycoprotein 1 -0.0274147
NHSL1 NHS-like 1 -0.0272989
TM4SF1 transmembrane 4 L six family member 1 -0.0268425