RMC-6236_LOX-IMVI Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description RMC-6236 perturbation in LOX-IMVI cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the RMC-6236_LOX-IMVI drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
EEF2 eukaryotic translation elongation factor 2 0.164749
EXT1 exostosin glycosyltransferase 1 0.121725
CD44 CD44 molecule (Indian blood group) 0.0919114
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0900788
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0853328
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0824349
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0771132
RPS2 ribosomal protein S2 0.0752207
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0698598
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0695338
NALF1 NALCN channel auxiliary factor 1 0.0660973
HSPA8 heat shock 70kDa protein 8 0.0638603
RPL23 ribosomal protein L23 0.0624883
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0618458
PCBP2 poly(rC) binding protein 2 0.0590801
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0585526
RPS12 ribosomal protein S12 0.0558179
SAMD4A sterile alpha motif domain containing 4A 0.0530625
FTL ferritin, light polypeptide 0.049948
RPL12 ribosomal protein L12 0.049521
HDAC9 histone deacetylase 9 0.0484897
MYH9 myosin, heavy chain 9, non-muscle 0.0479451
MCTP1 multiple C2 domains, transmembrane 1 0.047302
EIF1 eukaryotic translation initiation factor 1 0.0466315
HMGA2 high mobility group AT-hook 2 0.0459506
RPS3 ribosomal protein S3 0.0434831
RACK1 receptor for activated C kinase 1 0.0434554
FLNA filamin A, alpha 0.041515
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0401223
FTH1 ferritin, heavy polypeptide 1 0.0394735
ZSWIM6 zinc finger, SWIM-type containing 6 0.0364403
RPL37A ribosomal protein L37a 0.0363757
RPS8 ribosomal protein S8 0.0356242
ERRFI1 ERBB receptor feedback inhibitor 1 0.0355959
EIF4B eukaryotic translation initiation factor 4B 0.0339529
RPS18 ribosomal protein S18 0.0333606
NAV3 neuron navigator 3 0.0333415
RPS17 ribosomal protein S17 0.0333016
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0330946
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0325338
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.0318645
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0318124
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0317763
MSN moesin 0.0313405
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0311997
RPL27 ribosomal protein L27 0.0304497
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0301631
RPS4X ribosomal protein S4, X-linked 0.0299507
TLN1 talin 1 0.0296881
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0294829
LOC102724023 ES1 protein homolog, mitochondrial 0.029458
RPL3 ribosomal protein L3 0.0292178
RPL7 ribosomal protein L7 0.02906
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0283539
ASPH aspartate beta-hydroxylase 0.0282341
SON SON DNA binding protein 0.0278928
TXNIP thioredoxin interacting protein 0.0278383
ZNF638 zinc finger protein 638 0.0270213
YBX1 Y box binding protein 1 0.0267363
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0262009
APLP2 amyloid beta (A4) precursor-like protein 2 0.0261499
GPHN gephyrin 0.0259633
PALM2AKAP2 PALM2 and AKAP2 fusion 0.025833
BRD2 bromodomain containing 2 0.0250865
TPM3 tropomyosin 3 0.0249224
MARCHF4 membrane associated ring-CH-type finger 4 0.0249071
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 0.0247347
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0244167
NAP1L1 nucleosome assembly protein 1-like 1 0.0241011
RPL26 ribosomal protein L26 0.023197
FRMD6 FERM domain containing 6 0.022931
SDCCAG8 serologically defined colon cancer antigen 8 0.0228584
RFX3 regulatory factor X, 3 (influences HLA class II expression) 0.0228056
SET SET nuclear proto-oncogene 0.0227931
KLHL29 kelch-like family member 29 0.0226128
RPL5 ribosomal protein L5 0.0225391
IRS2 insulin receptor substrate 2 0.022477
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0222323
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0219933
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0217285
IPO7 importin 7 0.021415
SFPQ splicing factor proline/glutamine-rich 0.0212682
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0210284
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0209037
RPS6 ribosomal protein S6 0.0208206
MT2A metallothionein 2A 0.0208135
EIF5 eukaryotic translation initiation factor 5 0.0203936
OR51B5 olfactory receptor, family 51, subfamily B, member 5 0.0202348
RPS19 ribosomal protein S19 0.0201578
ITGA6 integrin, alpha 6 0.0200855
EFNB2 ephrin-B2 0.0199559
EEF1G eukaryotic translation elongation factor 1 gamma 0.0198237
RPLP1 ribosomal protein, large, P1 0.0193146
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0192955
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.0192708
RPS7 ribosomal protein S7 0.0192341
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa 0.0190318
ATF4 activating transcription factor 4 0.0186583
EPG5 ectopic P-granules autophagy protein 5 homolog (C. elegans) 0.0185595
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0185212

decreased expression

Symbol Name Standardized Value
MMP12 matrix metallopeptidase 12 -0.266121
SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 -0.13837
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.130754
PLEKHA5 pleckstrin homology domain containing, family A member 5 -0.107455
LSAMP limbic system-associated membrane protein -0.105598
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.104708
PHACTR1 phosphatase and actin regulator 1 -0.0971938
DST dystonin -0.0918552
TMSB10 thymosin beta 10 -0.0830862
CDH13 cadherin 13 -0.0776741
PRKG1 protein kinase, cGMP-dependent, type I -0.0765063
VIM vimentin -0.0744309
FN1 fibronectin 1 -0.0736485
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0685861
GPC6 glypican 6 -0.0684948
PTCHD4 patched domain containing 4 -0.0632951
ANXA2 annexin A2 -0.063147
PTK2 protein tyrosine kinase 2 -0.0598061
LIMCH1 LIM and calponin homology domains 1 -0.0592163
CD109 CD109 molecule -0.0579194
SBF2 SET binding factor 2 -0.0562841
GNAS GNAS complex locus -0.0552584
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0483782
TPM4 tropomyosin 4 -0.048051
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 -0.047573
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0471942
ENKUR enkurin, TRPC channel interacting protein -0.0463793
CFAP251 cilia and flagella associated protein 251 -0.0457287
C2CD2 C2 calcium-dependent domain containing 2 -0.0443409
DTNA dystrobrevin, alpha -0.0439185
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0437086
BNC2 basonuclin 2 -0.0432847
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0426818
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0417147
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0410444
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0405924
MAP3K20 mitogen-activated protein kinase kinase kinase 20 -0.0402543
ADAM9 ADAM metallopeptidase domain 9 -0.0392954
ALCAM activated leukocyte cell adhesion molecule -0.0390862
PTMA prothymosin, alpha -0.0386693
SAMD3 sterile alpha motif domain containing 3 -0.0380214
RBMS1 RNA binding motif, single stranded interacting protein 1 -0.0378835
VCL vinculin -0.0376671
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0368646
ERBIN erbb2 interacting protein -0.0368071
DNER delta/notch-like EGF repeat containing -0.036233
TENM2 teneurin transmembrane protein 2 -0.0360293
MAP3K7CL MAP3K7 C-terminal like -0.0359885
BIRC6 baculoviral IAP repeat containing 6 -0.0358343
KIAA1217 KIAA1217 -0.0354461
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit -0.0354441
ZNF804A zinc finger protein 804A -0.0354424
NDRG1 N-myc downstream regulated 1 -0.0352919
NTM neurotrimin -0.0350097
KPNB1 karyopherin (importin) beta 1 -0.0348709
HAS2 hyaluronan synthase 2 -0.0341257
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0339153
SLC38A2 solute carrier family 38, member 2 -0.0332721
WSB1 WD repeat and SOCS box containing 1 -0.0331583
MAP4 microtubule-associated protein 4 -0.0321959
ZMYM2 zinc finger, MYM-type 2 -0.0317803
EFNA5 ephrin-A5 -0.0315169
VEPH1 ventricular zone expressed PH domain-containing 1 -0.0310931
CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) -0.0309071
TAS2R14 taste receptor, type 2, member 14 -0.0308256
IFI16 interferon, gamma-inducible protein 16 -0.0307769
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0307059
PTBP3 polypyrimidine tract binding protein 3 -0.0303653
TMEM263 transmembrane protein 263 -0.030274
WDR45B WD repeat domain 45B -0.0299822
ARID2 AT rich interactive domain 2 (ARID, RFX-like) -0.0296712
ANK3 ankyrin 3, node of Ranvier (ankyrin G) -0.0295593
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) -0.0291884
JARID2 jumonji, AT rich interactive domain 2 -0.0291157
UGCG UDP-glucose ceramide glucosyltransferase -0.0288734
ACTR2 ARP2 actin-related protein 2 homolog (yeast) -0.0288194
CDK17 cyclin-dependent kinase 17 -0.0286914
WWC1 WW and C2 domain containing 1 -0.0285797
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0284248
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0278442
ELL2 elongation factor, RNA polymerase II, 2 -0.0277275
EPB41L2 erythrocyte membrane protein band 4.1-like 2 -0.0275859
CUX1 cut-like homeobox 1 -0.0274628
SETD5 SET domain containing 5 -0.0272724
SPAG9 sperm associated antigen 9 -0.027016
LMAN1 lectin, mannose-binding, 1 -0.0266883
RIC1 RAB6A GEF complex partner 1 -0.0265922
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0264186
VCAN versican -0.0262082
ZNF292 zinc finger protein 292 -0.0260994
NF1 neurofibromin 1 -0.0259126
MAPKAP1 mitogen-activated protein kinase associated protein 1 -0.0258676
WASF2 WAS protein family, member 2 -0.0257752
DIAPH2 diaphanous-related formin 2 -0.0257559
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0257311
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0256729
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.0253669
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.0253576
NPC1 Niemann-Pick disease, type C1 -0.0253477
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.0253089