RMC-6236_NCI-H2030 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description RMC-6236 perturbation in NCI-H2030 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the RMC-6236_NCI-H2030 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.098284
AKAP12 A kinase (PRKA) anchor protein 12 0.0954778
MT2A metallothionein 2A 0.0842307
SOD2 superoxide dismutase 2, mitochondrial 0.071113
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.068054
IGFBP3 insulin-like growth factor binding protein 3 0.0614351
PHLDB2 pleckstrin homology-like domain, family B, member 2 0.054704
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0503902
ELL2 elongation factor, RNA polymerase II, 2 0.0486791
FTH1 ferritin, heavy polypeptide 1 0.0428642
WWOX WW domain containing oxidoreductase 0.0409684
PM20D1 peptidase M20 domain containing 1 0.0405255
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0397687
IL6 interleukin 6 0.039498
EZR ezrin 0.0359908
ZSWIM6 zinc finger, SWIM-type containing 6 0.0338376
ATXN1 ataxin 1 0.0320714
C15ORF48 chromosome 15 open reading frame 48 0.0312714
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0309869
PDIA3 protein disulfide isomerase family A, member 3 0.0308367
MYH9 myosin, heavy chain 9, non-muscle 0.0302922
FNDC3B fibronectin type III domain containing 3B 0.0301342
SFTPA2 surfactant protein A2 0.029831
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0291176
MACF1 microtubule-actin crosslinking factor 1 0.0288539
CYP24A1 cytochrome P450, family 24, subfamily A, polypeptide 1 0.0287243
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 0.0285864
NDRG1 N-myc downstream regulated 1 0.0285776
PTPRJ protein tyrosine phosphatase, receptor type, J 0.0266849
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0262731
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0257925
FLNB filamin B, beta 0.0250993
EPAS1 endothelial PAS domain protein 1 0.0249199
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0248486
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0248261
TRIO trio Rho guanine nucleotide exchange factor 0.0241114
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0240403
KIAA0319 KIAA0319 0.0239973
RPLP1 ribosomal protein, large, P1 0.0234336
AHNAK2 AHNAK nucleoprotein 2 0.023321
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0229099
SQSTM1 sequestosome 1 0.0226838
FOS FBJ murine osteosarcoma viral oncogene homolog 0.0224343
EXT1 exostosin glycosyltransferase 1 0.0219488
GOLGB1 golgin B1 0.0218681
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.021773
CSNK1A1 casein kinase 1, alpha 1 0.0217221
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0217216
RPS6 ribosomal protein S6 0.0213327
SAMD4A sterile alpha motif domain containing 4A 0.02099
PRELID2 PRELI domain containing 2 0.0201166
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 0.0196705
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0194687
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0194662
HLA-E major histocompatibility complex, class I, E 0.0194339
FN1 fibronectin 1 0.0194212
JUN jun proto-oncogene 0.0193634
PLEC plectin 0.0192949
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0191563
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.018965
GCLC glutamate-cysteine ligase, catalytic subunit 0.0188193
CLIP1 CAP-GLY domain containing linker protein 1 0.0184088
WAC WW domain containing adaptor with coiled-coil 0.0182763
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.0181901
HSPA8 heat shock 70kDa protein 8 0.0178426
GOLGA4 golgin A4 0.0177723
NBEAL1 neurobeachin-like 1 0.0177561
HLA-B major histocompatibility complex, class I, B 0.017711
IER3 immediate early response 3 0.0171778
CLIC4 chloride intracellular channel 4 0.0170424
AHNAK AHNAK nucleoprotein 0.016809
FOSB FBJ murine osteosarcoma viral oncogene homolog B 0.016757
ANXA1 annexin A1 0.0166057
KTN1 kinectin 1 (kinesin receptor) 0.0164172
DSE dermatan sulfate epimerase 0.0163573
PYGL phosphorylase, glycogen, liver 0.0161216
OPTN optineurin 0.0160373
IRAK2 interleukin-1 receptor-associated kinase 2 0.0160038
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0158691
LAMC2 laminin, gamma 2 0.0158579
CYP20A1 cytochrome P450, family 20, subfamily A, polypeptide 1 0.0156631
MLF1 myeloid leukemia factor 1 0.0155267
DSPP dentin sialophosphoprotein 0.0155144
CD44 CD44 molecule (Indian blood group) 0.0154907
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.0154849
JMJD1C jumonji domain containing 1C 0.0153649
ECPAS Ecm29 proteasome adaptor and scaffold 0.0153317
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0152842
USP53 ubiquitin specific peptidase 53 0.0151352
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0149824
ITGAV integrin, alpha V 0.014924
SEC23A Sec23 homolog A (S. cerevisiae) 0.0148646
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 0.0147842
UBE2E2 ubiquitin-conjugating enzyme E2E 2 0.0147282
SLC9A1 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 0.0146478
CLIP2 CAP-GLY domain containing linker protein 2 0.0145787
MCL1 myeloid cell leukemia 1 0.0144347
DAAM1 dishevelled associated activator of morphogenesis 1 0.0144346
EEF2 eukaryotic translation elongation factor 2 0.0143562
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0143461

decreased expression

Symbol Name Standardized Value
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.137239
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.131951
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.102805
SLC38A2 solute carrier family 38, member 2 -0.101752
FTL ferritin, light polypeptide -0.0934003
TMSB10 thymosin beta 10 -0.0884216
THSD4 thrombospondin, type I, domain containing 4 -0.0872359
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0781881
TXNRD1 thioredoxin reductase 1 -0.0710889
GRAMD1B GRAM domain containing 1B -0.0660019
TFPI2 tissue factor pathway inhibitor 2 -0.0659259
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0637752
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0632516
RPS4Y1 ribosomal protein S4, Y-linked 1 -0.059598
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0592939
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0540172
WDR43 WD repeat domain 43 -0.0537456
NQO1 NAD(P)H dehydrogenase, quinone 1 -0.0536623
IGF2 insulin-like growth factor 2 -0.0526243
NEGR1 neuronal growth regulator 1 -0.0523932
ERBIN erbb2 interacting protein -0.0520992
HDAC9 histone deacetylase 9 -0.0520675
EGR1 early growth response 1 -0.0519406
PFN1 profilin 1 -0.0519152
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0493036
MAML3 mastermind-like 3 (Drosophila) -0.0471038
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0470118
BICC1 BicC family RNA binding protein 1 -0.0462363
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0444851
LDHA lactate dehydrogenase A -0.0444282
LANCL1 LanC lantibiotic synthetase component C-like 1 (bacterial) -0.0443814
DOCK5 dedicator of cytokinesis 5 -0.0431671
PTK2 protein tyrosine kinase 2 -0.0405452
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 -0.0404772
HMGA1 high mobility group AT-hook 1 -0.0391735
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0381306
DENND4A DENN/MADD domain containing 4A -0.0373502
UBASH3B ubiquitin associated and SH3 domain containing B -0.0368617
AP2B1 adaptor-related protein complex 2, beta 1 subunit -0.0360226
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) -0.0359927
UTRN utrophin -0.0358681
PKM pyruvate kinase, muscle -0.0358523
EIF3H eukaryotic translation initiation factor 3, subunit H -0.0342327
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0337916
ACTG1 actin gamma 1 -0.033342
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0332201
STC1 stanniocalcin 1 -0.0332182
ECT2 epithelial cell transforming 2 -0.0328824
PCNX4 pecanex 4 -0.0327109
CYRIB CYFIP related Rac1 interactor B -0.0326433
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0323391
POTEF POTE ankyrin domain family, member F -0.0322861
RHOA ras homolog family member A -0.0319405
TM4SF1 transmembrane 4 L six family member 1 -0.0319049
ATP5F1B ATP synthase F1 subunit beta -0.0318787
RASAL2 RAS protein activator like 2 -0.0318525
KHDC4 KH domain containing 4, pre-mRNA splicing factor -0.0314737
HMGA2 high mobility group AT-hook 2 -0.031156
EFNA5 ephrin-A5 -0.0310052
SMAD2 SMAD family member 2 -0.0305953
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0296406
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 -0.0295962
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0295867
USP34 ubiquitin specific peptidase 34 -0.0291409
RPL19 ribosomal protein L19 -0.0288908
DOCK4 dedicator of cytokinesis 4 -0.0287858
THBS1 thrombospondin 1 -0.0287847
RTN4 reticulon 4 -0.0285377
VIM vimentin -0.0283403
ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 -0.0280437
BICD1 bicaudal D homolog 1 (Drosophila) -0.0279419
MBNL1 muscleblind-like splicing regulator 1 -0.0279185
NFE2L2 nuclear factor, erythroid 2-like 2 -0.0278467
TMEM131 transmembrane protein 131 -0.0278277
RPLP0 ribosomal protein, large, P0 -0.0275932
KYNU kynureninase -0.0275821
CNOT1 CCR4-NOT transcription complex, subunit 1 -0.0272543
CHD9 chromodomain helicase DNA binding protein 9 -0.026998
WBP11 WW domain binding protein 11 -0.0268047
ACACA acetyl-CoA carboxylase alpha -0.0266555
TBC1D5 TBC1 domain family, member 5 -0.026536
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.0264877
PAWR PRKC, apoptosis, WT1, regulator -0.0260616
ANKRD28 ankyrin repeat domain 28 -0.0260503
NAV3 neuron navigator 3 -0.0259936
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0259693
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0259156
CCNL1 cyclin L1 -0.0259071
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.02582
NRG1 neuregulin 1 -0.0257337
LRPPRC leucine-rich pentatricopeptide repeat containing -0.0253964
BMPR1B bone morphogenetic protein receptor, type IB -0.0252513
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0252058
DGKD diacylglycerol kinase, delta 130kDa -0.0251645
NCEH1 neutral cholesterol ester hydrolase 1 -0.024912
GLIS3 GLIS family zinc finger 3 -0.024761
CHN1 chimerin 1 -0.0247071
RHEB Ras homolog enriched in brain -0.0245141
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0244278
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0241363