RMC-6236_RPMI-7951 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description RMC-6236 perturbation in RPMI-7951 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the RMC-6236_RPMI-7951 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FTH1 ferritin, heavy polypeptide 1 0.145757
IFI44L interferon-induced protein 44-like 0.0637256
STC1 stanniocalcin 1 0.0605952
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0574923
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 0.0525515
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0470707
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0457577
MMP2 matrix metallopeptidase 2 0.0455646
MX1 MX dynamin-like GTPase 1 0.0433915
ARRDC3 arrestin domain containing 3 0.0416879
PLEKHA4 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 0.0408283
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0405125
SPTBN1 spectrin, beta, non-erythrocytic 1 0.040412
SP100 SP100 nuclear antigen 0.0378604
CD109 CD109 molecule 0.0374563
SRRM2 serine/arginine repetitive matrix 2 0.0323275
HLA-E major histocompatibility complex, class I, E 0.0303575
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0301691
PLIN2 perilipin 2 0.029986
EEF2 eukaryotic translation elongation factor 2 0.0294037
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0291128
SAMD9 sterile alpha motif domain containing 9 0.0289151
CXCL8 chemokine (C-X-C motif) ligand 8 0.0285874
FAT1 FAT atypical cadherin 1 0.028574
B2M beta-2-microglobulin 0.0275408
SFTPA2 surfactant protein A2 0.0252611
SMAD3 SMAD family member 3 0.024249
SOD2 superoxide dismutase 2, mitochondrial 0.0240348
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0240267
SON SON DNA binding protein 0.0236368
BHLHE40 basic helix-loop-helix family, member e40 0.0236346
VEGFA vascular endothelial growth factor A 0.0233665
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0229077
NFE2L2 nuclear factor, erythroid 2-like 2 0.0225801
SSH1 slingshot protein phosphatase 1 0.0223664
TWIST2 twist family bHLH transcription factor 2 0.0221719
RUNX1 runt-related transcription factor 1 0.0221405
DSTN destrin (actin depolymerizing factor) 0.0221043
SCARB2 scavenger receptor class B, member 2 0.021571
TMF1 TATA element modulatory factor 1 0.0208254
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.0205742
CEMIP cell migration inducing protein, hyaluronan binding 0.0203461
IFI44 interferon-induced protein 44 0.0199872
RB1CC1 RB1-inducible coiled-coil 1 0.0196104
EREG epiregulin 0.0194313
PARP9 poly (ADP-ribose) polymerase family, member 9 0.0191616
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0188685
PMP22 peripheral myelin protein 22 0.0185959
GOLGA4 golgin A4 0.0185772
PRRC2C proline-rich coiled-coil 2C 0.0183768
EPSTI1 epithelial stromal interaction 1 (breast) 0.0180966
ZEB2 zinc finger E-box binding homeobox 2 0.0176291
ARID5B AT rich interactive domain 5B (MRF1-like) 0.0172796
SYNE1 spectrin repeat containing, nuclear envelope 1 0.0172273
ARFGEF1 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) 0.0169721
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.016881
MX2 MX dynamin-like GTPase 2 0.01674
AHR aryl hydrocarbon receptor 0.0167101
KLF6 Kruppel-like factor 6 0.0164529
ZNF638 zinc finger protein 638 0.0163807
KIF5B kinesin family member 5B 0.0163405
DDX27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 0.0161729
GLS2 glutaminase 2 (liver, mitochondrial) 0.0161591
OSBPL8 oxysterol binding protein-like 8 0.0161205
PLSCR1 phospholipid scramblase 1 0.0156081
H1-0 H1.0 linker histone 0.0155727
MYADM myeloid-associated differentiation marker 0.0152747
DTX3L deltex 3 like, E3 ubiquitin ligase 0.0151392
HDAC9 histone deacetylase 9 0.0150475
ARPP19 cAMP-regulated phosphoprotein, 19kDa 0.0147589
DNTTIP2 deoxynucleotidyltransferase, terminal, interacting protein 2 0.0147358
ADAR adenosine deaminase, RNA-specific 0.0147332
LOC102724023 ES1 protein homolog, mitochondrial 0.0147277
ZC3H11A zinc finger CCCH-type containing 11A 0.0145338
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0144954
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0144546
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 0.0144361
GOLGB1 golgin B1 0.0143953
OAS3 2'-5'-oligoadenylate synthetase 3, 100kDa 0.0143475
AMPD3 adenosine monophosphate deaminase 3 0.0143373
SDF4 stromal cell derived factor 4 0.0141655
LYST lysosomal trafficking regulator 0.0141581
IFI16 interferon, gamma-inducible protein 16 0.014126
PHF3 PHD finger protein 3 0.0140134
SLFN5 schlafen family member 5 0.0137427
NAMPT nicotinamide phosphoribosyltransferase 0.0137047
XRN1 5'-3' exoribonuclease 1 0.0134875
RDX radixin 0.0134191
ARHGAP21 Rho GTPase activating protein 21 0.0133216
PCBP2 poly(rC) binding protein 2 0.0131827
ATF4 activating transcription factor 4 0.0130644
SYNJ2 synaptojanin 2 0.0130511
PCM1 pericentriolar material 1 0.0129914
JARID2 jumonji, AT rich interactive domain 2 0.0128846
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 0.0128492
IFIT1 interferon-induced protein with tetratricopeptide repeats 1 0.0128293
AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 0.0127964
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0127426
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0126913
TTBK2 tau tubulin kinase 2 0.0126823

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.243903
HLA-B major histocompatibility complex, class I, B -0.172462
VIM vimentin -0.161563
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.119316
COL1A1 collagen, type I, alpha 1 -0.115582
NDRG1 N-myc downstream regulated 1 -0.110331
FN1 fibronectin 1 -0.0981108
FRMD4A FERM domain containing 4A -0.0971739
PTMA prothymosin, alpha -0.0962421
COL1A2 collagen, type I, alpha 2 -0.0937432
CDH13 cadherin 13 -0.089711
TMSB10 thymosin beta 10 -0.0894548
FTL ferritin, light polypeptide -0.0854055
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0822708
TPT1 tumor protein, translationally-controlled 1 -0.0785007
IER3 immediate early response 3 -0.0738668
POTEF POTE ankyrin domain family, member F -0.0696946
ASPH aspartate beta-hydroxylase -0.0665585
COL6A1 collagen, type VI, alpha 1 -0.065529
EGR1 early growth response 1 -0.0643148
ZEB1 zinc finger E-box binding homeobox 1 -0.0622864
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0617465
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0614461
CD44 CD44 molecule (Indian blood group) -0.0581975
COL6A2 collagen, type VI, alpha 2 -0.0555414
FNDC3B fibronectin type III domain containing 3B -0.0555357
TGFBI transforming growth factor, beta-induced, 68kDa -0.055142
APCDD1L adenomatosis polyposis coli down-regulated 1-like -0.0550643
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 -0.0535902
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 -0.0529422
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0522533
PSD3 pleckstrin and Sec7 domain containing 3 -0.0510467
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0501217
TMEM158 transmembrane protein 158 (gene/pseudogene) -0.049963
TFPI2 tissue factor pathway inhibitor 2 -0.0499051
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0489424
PDE4D phosphodiesterase 4D, cAMP-specific -0.0488792
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.048324
NAV1 neuron navigator 1 -0.0481746
PKM pyruvate kinase, muscle -0.0472932
ACTG1 actin gamma 1 -0.0470294
S100A6 S100 calcium binding protein A6 -0.046367
PALM2AKAP2 PALM2 and AKAP2 fusion -0.0448483
RAB7A RAB7A, member RAS oncogene family -0.0442651
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 -0.0441017
IQCJ-SCHIP1 IQCJ-SCHIP1 readthrough -0.0438135
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0431796
MCL1 myeloid cell leukemia 1 -0.0423846
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.0421277
IFI6 interferon, alpha-inducible protein 6 -0.0421173
RPL35A ribosomal protein L35a -0.0414291
PPIB peptidylprolyl isomerase B (cyclophilin B) -0.0412359
ZMYND8 zinc finger, MYND-type containing 8 -0.0408597
TPM4 tropomyosin 4 -0.0399198
PTPRG protein tyrosine phosphatase, receptor type, G -0.0396106
RALY RALY heterogeneous nuclear ribonucleoprotein -0.0391557
TNS3 tensin 3 -0.038622
RPL31 ribosomal protein L31 -0.0384816
HLA-C major histocompatibility complex, class I, C -0.0379913
RPS6 ribosomal protein S6 -0.0377336
GNAS GNAS complex locus -0.0377259
HM13 histocompatibility (minor) 13 -0.0373378
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -0.0370934
DLG1 discs, large homolog 1 (Drosophila) -0.0370466
EXT1 exostosin glycosyltransferase 1 -0.0367713
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0367642
RPS21 ribosomal protein S21 -0.0366835
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0366075
VCL vinculin -0.0361122
RAB1A RAB1A, member RAS oncogene family -0.0351618
IL1B interleukin 1, beta -0.0349434
VMP1 vacuole membrane protein 1 -0.0347478
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0342063
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.033946
GLIS3 GLIS family zinc finger 3 -0.0339232
MEF2A myocyte enhancer factor 2A -0.0338387
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0337728
RPLP2 ribosomal protein, large, P2 -0.0333816
RPLP1 ribosomal protein, large, P1 -0.0331495
RPS25 ribosomal protein S25 -0.0330825
FAM20C family with sequence similarity 20, member C -0.0330138
RPS19 ribosomal protein S19 -0.0328595
HPCAL1 hippocalcin-like 1 -0.0326528
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa -0.0325578
ENO2 enolase 2 (gamma, neuronal) -0.032523
PDIA3 protein disulfide isomerase family A, member 3 -0.032274
COL5A1 collagen, type V, alpha 1 -0.0317466
LPP LIM domain containing preferred translocation partner in lipoma -0.0315917
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.0315284
F3 coagulation factor III (thromboplastin, tissue factor) -0.0309827
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.0308662
RPS16 ribosomal protein S16 -0.0306814
COL7A1 collagen, type VII, alpha 1 -0.0306759
SETD5 SET domain containing 5 -0.0306757
RFX8 RFX family member 8, lacking RFX DNA binding domain -0.0302861
STAU1 staufen double-stranded RNA binding protein 1 -0.0300846
RPL34 ribosomal protein L34 -0.0296046
S100A10 S100 calcium binding protein A10 -0.0295942
CALR calreticulin -0.0295762
SEC31A SEC31 homolog A (S. cerevisiae) -0.0292024