RNA polymerase I core factor complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025
Category structural or functional annotations
Type cellular component
Description A RNA polymerase I-specific transcription factor complex that is required for the transcription of rDNA by RNA polymerase I. In yeast the complex consists of Rrn6p, Rrn7p, and Rrn11p. (Gene Ontology, GO_0070860)
External Link http://amigo.geneontology.org/amigo/term/GO:0070860
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Genes

85 proteins co-occuring with the RNA polymerase I core factor complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.

Symbol Name Standardized Value
EBLN2 endogenous Bornavirus-like nucleoprotein 2 2.668
ZNF311 zinc finger protein 311 2.653
TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa 2.303
GTF2B general transcription factor IIB 1.903
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 1.844
CWF19L2 CWF19-like 2, cell cycle control (S. pombe) 1.831
CCN6 cellular communication network factor 6 1.781
TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa 1.769
TAF1A TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa 1.739
HMGXB3 HMG box domain containing 3 1.737
AUH AU RNA binding protein/enoyl-CoA hydratase 1.56
RBMX RNA binding motif protein, X-linked 1.534
BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 1.495
HSDL2 hydroxysteroid dehydrogenase like 2 1.416
SCUBE3 signal peptide, CUB domain, EGF-like 3 1.405
PDHA2 pyruvate dehydrogenase (lipoamide) alpha 2 1.376
RRN3 RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) 1.366
SAMD8 sterile alpha motif domain containing 8 1.361
HGD homogentisate 1,2-dioxygenase 1.326
PKNOX2 PBX/knotted 1 homeobox 2 1.309
TECPR2 tectonin beta-propeller repeat containing 2 1.3
PRKAR1B protein kinase, cAMP-dependent, regulatory, type I, beta 1.281
GTF2IRD1 GTF2I repeat domain containing 1 1.264
MECR mitochondrial trans-2-enoyl-CoA reductase 1.253
ALG13 ALG13, UDP-N-acetylglucosaminyltransferase subunit 1.251
SBF1 SET binding factor 1 1.21
ZRANB1 zinc finger, RAN-binding domain containing 1 1.195
RGS3 regulator of G-protein signaling 3 1.18
TRIM23 tripartite motif containing 23 1.173
POLR2J polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa 1.166
HSD17B8 hydroxysteroid (17-beta) dehydrogenase 8 1.145
HPD 4-hydroxyphenylpyruvate dioxygenase 1.144
TTC1 tetratricopeptide repeat domain 1 1.121
NBEA neurobeachin 1.12
TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa 1.093
POLR2E polymerase (RNA) II (DNA directed) polypeptide E, 25kDa 1.057
INSRR insulin receptor-related receptor 1.052
KCNN2 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 2 1.036
PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 1.033
POLR1D polymerase (RNA) I polypeptide D, 16kDa 1.03
OXSM 3-oxoacyl-ACP synthase, mitochondrial 1.03
P3H1 prolyl 3-hydroxylase 1 1.021
HMGCL 3-hydroxymethyl-3-methylglutaryl-CoA lyase 1.021
KMO kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) 1.005
CELF2 CUGBP, Elav-like family member 2 0.977
POLR2C polymerase (RNA) II (DNA directed) polypeptide C, 33kDa 0.977
BRD1 bromodomain containing 1 0.976
SGK3 serum/glucocorticoid regulated kinase family, member 3 0.967
PUM1 pumilio RNA-binding family member 1 0.955
LPAR3 lysophosphatidic acid receptor 3 0.955
NPY2R neuropeptide Y receptor Y2 0.95
ACAA1 acetyl-CoA acyltransferase 1 0.927
EPHA5 EPH receptor A5 0.912
POLI polymerase (DNA directed) iota 0.9
TNIP1 TNFAIP3 interacting protein 1 0.895
ACADS acyl-CoA dehydrogenase, C-2 to C-3 short chain 0.891
MCAT malonyl CoA:ACP acyltransferase (mitochondrial) 0.862
COL7A1 collagen, type VII, alpha 1 0.862
WWOX WW domain containing oxidoreductase 0.829
PDHB pyruvate dehydrogenase (lipoamide) beta 0.819
NSD1 nuclear receptor binding SET domain protein 1 0.814
FLCN folliculin 0.78
GGPS1 geranylgeranyl diphosphate synthase 1 0.78
CAPN3 calpain 3, (p94) 0.769
NUP214 nucleoporin 214kDa 0.769
FSTL1 follistatin-like 1 0.766
ECHS1 enoyl CoA hydratase, short chain, 1, mitochondrial 0.756
HTR2C 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled 0.723
PDHA1 pyruvate dehydrogenase (lipoamide) alpha 1 0.69
OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 0.688
TBP TATA box binding protein 0.681
GSR glutathione reductase 0.666
IL10RA interleukin 10 receptor, alpha 0.651
IREB2 iron-responsive element binding protein 2 0.65
CIITA class II, major histocompatibility complex, transactivator 0.63
TRPM8 transient receptor potential cation channel, subfamily M, member 8 0.627
GNAS GNAS complex locus 0.618
ITK IL2-inducible T-cell kinase 0.617
SCN8A sodium channel, voltage gated, type VIII alpha subunit 0.611
TRIM28 tripartite motif containing 28 0.607
PRKCD protein kinase C, delta 0.598
EPHB2 EPH receptor B2 0.554
RAPGEF3 Rap guanine nucleotide exchange factor (GEF) 3 0.543
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.525
ACACA acetyl-CoA carboxylase alpha 0.507