RNA polymerase II-specific DNA-binding transcription factor binding Gene Set

Dataset GO Molecular Function Annotations 2025
Category structural or functional annotations
Type molecular function
External Link http://amigo.geneontology.org/amigo/term/GO:0061629
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Genes

233 genes performing the RNA polymerase II-specific DNA-binding transcription factor binding molecular function from the curated GO Molecular Function Annotations 2025 dataset.

Symbol Name
ACTN4 actinin, alpha 4
ADD1 adducin 1 (alpha)
AHR aryl hydrocarbon receptor
ANKRD1 ankyrin repeat domain 1 (cardiac muscle)
ANKRD2 ankyrin repeat domain 2 (stretch responsive muscle)
ANKRD42 ankyrin repeat domain 42
ANXA4 annexin A4
AREG amphiregulin
ARID1A AT rich interactive domain 1A (SWI-like)
ARNT2 aryl-hydrocarbon receptor nuclear translocator 2
ASAH1 N-acylsphingosine amidohydrolase (acid ceramidase) 1
ATF4 activating transcription factor 4
BAZ2A bromodomain adjacent to zinc finger domain, 2A
BBS1 Bardet-Biedl syndrome 1
BBS10 Bardet-Biedl syndrome 10
BBS2 Bardet-Biedl syndrome 2
BBS4 Bardet-Biedl syndrome 4
BBS5 Bardet-Biedl syndrome 5
BBS7 Bardet-Biedl syndrome 7
BCAS3 breast carcinoma amplified sequence 3
BCL10 B-cell CLL/lymphoma 10
BEX2 brain expressed X-linked 2
BHLHE40 basic helix-loop-helix family, member e40
BHLHE41 basic helix-loop-helix family, member e41
BMAL1 basic helix-loop-helix ARNT like 1
BRMS1L breast cancer metastasis-suppressor 1-like
BUD31 BUD31 homolog (S. cerevisiae)
CD34 CD34 molecule
CDK5RAP3 CDK5 regulatory subunit associated protein 3
CDKN2A cyclin-dependent kinase inhibitor 2A
CEBPA CCAAT/enhancer binding protein (C/EBP), alpha
CHD4 chromodomain helicase DNA binding protein 4
COMMD6 COMM domain containing 6
COMMD7 COMM domain containing 7
COMMD8 COMM domain containing 8
CPNE1 copine I
CREB1 cAMP responsive element binding protein 1
CREBBP CREB binding protein
CRKL v-crk avian sarcoma virus CT10 oncogene homolog-like
CRX cone-rod homeobox
CRY1 cryptochrome circadian clock 1
CSNK2B casein kinase 2, beta polypeptide
CTDP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
DACT1 dishevelled-binding antagonist of beta-catenin 1
DAND5 DAN domain family member 5, BMP antagonist
DAXX death-domain associated protein
DDIT3 DNA-damage-inducible transcript 3
DDRGK1 DDRGK domain containing 1
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9
DLL1 delta-like 1 (Drosophila)
DMAP1 DNA methyltransferase 1 associated protein 1
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1
DNAJA3 DnaJ (Hsp40) homolog, subfamily A, member 3
DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha
DOT1L DOT1-like histone H3K79 methyltransferase
DTX3L deltex 3 like, E3 ubiquitin ligase
DUSP28 dual specificity phosphatase 28
E4F1 E4F transcription factor 1
EGR2 early growth response 2
EOMES eomesodermin
EP300 E1A binding protein p300
EPAS1 endothelial PAS domain protein 1
ESRRB estrogen-related receptor beta
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1
ETS2 v-ets avian erythroblastosis virus E26 oncogene homolog 2
FAF1 Fas (TNFRSF6) associated factor 1
FAM220A family with sequence similarity 220, member A
FBP1 fructose-1,6-bisphosphatase 1
FIZ1 FLT3-interacting zinc finger 1
FOS FBJ murine osteosarcoma viral oncogene homolog
FOXC1 forkhead box C1
FOXP3 forkhead box P3
GABARAPL1 GABA(A) receptor-associated protein like 1
GATA1 GATA binding protein 1 (globin transcription factor 1)
GATA2 GATA binding protein 2
GATA3 GATA binding protein 3
GATA4 GATA binding protein 4
GATA6 GATA binding protein 6
GDNF glial cell derived neurotrophic factor
GFI1B growth factor independent 1B transcription repressor
GSC goosecoid homeobox
GSK3B glycogen synthase kinase 3 beta
GTF2I general transcription factor IIi
H2BC9 H2B clustered histone 9
HAND1 heart and neural crest derivatives expressed 1
HAND2 heart and neural crest derivatives expressed 2
HCLS1 hematopoietic cell-specific Lyn substrate 1
HDAC1 histone deacetylase 1
HDAC2 histone deacetylase 2
HDAC3 histone deacetylase 3
HDAC4 histone deacetylase 4
HDAC5 histone deacetylase 5
HDAC9 histone deacetylase 9
HES6 hes family bHLH transcription factor 6
HEY1 hes-related family bHLH transcription factor with YRPW motif 1
HEY2 hes-related family bHLH transcription factor with YRPW motif 2
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HIF1AN hypoxia inducible factor 1, alpha subunit inhibitor
HIPK2 homeodomain interacting protein kinase 2
HIRA histone cell cycle regulator
HMGA2 high mobility group AT-hook 2
HMGB1 high mobility group box 1
HNF1A HNF1 homeobox A
HSPB1 heat shock 27kDa protein 1
ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
IFI27 interferon, alpha-inducible protein 27
ISL1 ISL LIM homeobox 1
JUN jun proto-oncogene
JUP junction plakoglobin
KAT8 K(lysine) acetyltransferase 8
KCNH8 potassium channel, voltage gated eag related subfamily H, member 8
KDM1A lysine (K)-specific demethylase 1A
KEAP1 kelch-like ECH-associated protein 1
KLF4 Kruppel-like factor 4 (gut)
LDB2 LIM domain binding 2
LHX3 LIM homeobox 3
LMO2 LIM domain only 2 (rhombotin-like 1)
LOC102724023 ES1 protein homolog, mitochondrial
MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast)
MAPK14 mitogen-activated protein kinase 14
MBD4 methyl-CpG binding domain protein 4
MDFIC MyoD family inhibitor domain containing
MEF2A myocyte enhancer factor 2A
MEF2C myocyte enhancer factor 2C
MEF2D myocyte enhancer factor 2D
MIA3 melanoma inhibitory activity family, member 3
MIXL1 Mix paired-like homeobox
MKKS McKusick-Kaufman syndrome
MLXIPL MLX interacting protein-like
MTA1 metastasis associated 1
MTA2 metastasis associated 1 family, member 2
MTDH metadherin
MYOCD myocardin
MYOD1 myogenic differentiation 1
NCOA1 nuclear receptor coactivator 1
NCOA2 nuclear receptor coactivator 2
NCOA3 nuclear receptor coactivator 3
NCOA7 nuclear receptor coactivator 7
NCOR1 nuclear receptor corepressor 1
NEUROD1 neuronal differentiation 1
NFATC1 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
NFE2L2 nuclear factor, erythroid 2-like 2
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
NHLH2 nescient helix loop helix 2
NIF3L1 NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)
NKX2-1 NK2 homeobox 1
NKX2-5 NK2 homeobox 5
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NR0B1 nuclear receptor subfamily 0, group B, member 1
NR1H4 nuclear receptor subfamily 1, group H, member 4
NR1I2 nuclear receptor subfamily 1, group I, member 2
NRIP1 nuclear receptor interacting protein 1
PARP1 poly (ADP-ribose) polymerase 1
PARP9 poly (ADP-ribose) polymerase family, member 9
PDCD11 programmed cell death 11
PIAS2 protein inhibitor of activated STAT, 2
PITX1 paired-like homeodomain 1
PITX2 paired-like homeodomain 2
POTEF POTE ankyrin domain family, member F
POU1F1 POU class 1 homeobox 1
POU5F1 POU class 5 homeobox 1
PPARA peroxisome proliferator-activated receptor alpha
PPARG peroxisome proliferator-activated receptor gamma
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PRKDC protein kinase, DNA-activated, catalytic polypeptide
PROX1 prospero homeobox 1
PRRX1 paired related homeobox 1
PSMA6 proteasome (prosome, macropain) subunit, alpha type, 6
PSMD10 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
PTPRT protein tyrosine phosphatase, receptor type, T
RBBP8 retinoblastoma binding protein 8
RBM15 RNA binding motif protein 15
RBPJ recombination signal binding protein for immunoglobulin kappa J region
RBX1 ring-box 1, E3 ubiquitin protein ligase
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
REST RE1-silencing transcription factor
RNF25 ring finger protein 25
SDR16C5 short chain dehydrogenase/reductase family 16C, member 5
SETD1A SET domain containing 1A
SETD6 SET domain containing 6
SIN3A SIN3 transcription regulator family member A
SIRT1 sirtuin 1
SMAD3 SMAD family member 3
SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
SNW1 SNW domain containing 1
SOX17 SRY (sex determining region Y)-box 17
SP100 SP100 nuclear antigen
SP3 Sp3 transcription factor
SPI1 Spi-1 proto-oncogene
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STING1 stimulator of interferon response cGAMP interactor 1
STK4 serine/threonine kinase 4
TACC1 transforming, acidic coiled-coil containing protein 1
TACC2 transforming, acidic coiled-coil containing protein 2
TADA3 transcriptional adaptor 3
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa
TAF4B TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa
TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
TAL1 T-cell acute lymphocytic leukemia 1
TBK1 TANK-binding kinase 1
TBP TATA box binding protein
TBX20 T-box 20
TBX3 T-box 3
TBX5 T-box 5
TBX6 T-box 6
TBXT T-box transcription factor T
TCERG1 transcription elongation regulator 1
TCF23 transcription factor 23
TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box)
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TEAD3 TEA domain family member 3
TFDP3 transcription factor Dp family, member 3
TP53 tumor protein p53
TP53BP1 tumor protein p53 binding protein 1
TP53BP2 tumor protein p53 binding protein 2
TP73 tumor protein p73
TRIB1 tribbles pseudokinase 1
TRIB2 tribbles pseudokinase 2
TRIM32 tripartite motif containing 32
TRIP4 thyroid hormone receptor interactor 4
TTC8 tetratricopeptide repeat domain 8
UBXN7 UBX domain protein 7
UHRF2 ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase
WWP2 WW domain containing E3 ubiquitin protein ligase 2
ZBTB8A zinc finger and BTB domain containing 8A
ZFPM1 zinc finger protein, FOG family member 1
ZFPM2 zinc finger protein, FOG family member 2