RNA polymerase IV complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025
Category structural or functional annotations
Type cellular component
External Link http://amigo.geneontology.org/amigo/term/GO:0000418
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Genes

210 proteins co-occuring with the RNA polymerase IV complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.

Symbol Name Standardized Value
AGO4 argonaute RISC catalytic component 4 3.496
DICER1 dicer 1, ribonuclease type III 2.595
AGO1 argonaute RISC catalytic component 1 2.532
SLC1A5 solute carrier family 1 (neutral amino acid transporter), member 5 2.309
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 2.154
PIWIL1 piwi-like RNA-mediated gene silencing 1 2.153
PIWIL4 piwi-like RNA-mediated gene silencing 4 2.152
AGO2 argonaute RISC catalytic component 2 1.981
DNMT1 DNA (cytosine-5-)-methyltransferase 1 1.979
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1.944
AGO3 argonaute RISC catalytic component 3 1.845
DROSHA drosha, ribonuclease type III 1.838
MORC1 MORC family CW-type zinc finger 1 1.815
SLC10A3 solute carrier family 10, member 3 1.756
H3C13 H3 clustered histone 13 1.751
H3-5 H3.5 histone 1.751
H3-7 H3.7 histone (putative) 1.751
H3-4 H3.4 histone, cluster member 1.75
H3-3B H3.3 histone B 1.741
WDCP WD repeat and coiled coil containing 1.711
DRD1 dopamine receptor D1 1.677
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 1.548
DDB2 damage-specific DNA binding protein 2, 48kDa 1.502
H2AZ1 H2A.Z variant histone 1 1.47
H2AC20 H2A clustered histone 20 1.459
H2AC19 H2A clustered histone 19 1.458
ALDH4A1 aldehyde dehydrogenase 4 family, member A1 1.445
GZMM granzyme M (lymphocyte met-ase 1) 1.422
SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 18kDa 1.413
CD302 CD302 molecule 1.408
SRRT serrate, RNA effector molecule 1.39
STARD8 StAR-related lipid transfer (START) domain containing 8 1.368
POLI polymerase (DNA directed) iota 1.342
ZBTB1 zinc finger and BTB domain containing 1 1.341
MYB v-myb avian myeloblastosis viral oncogene homolog 1.329
POLR2I polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa 1.237
SRCAP Snf2-related CREBBP activator protein 1.203
MORC4 MORC family CW-type zinc finger 4 1.201
POLRMT polymerase (RNA) mitochondrial (DNA directed) 1.19
RNASEH1 ribonuclease H1 1.173
ZNF793 zinc finger protein 793 1.17
H1-1 H1.1 linker histone, cluster member 1.161
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 1.16
POLR2G polymerase (RNA) II (DNA directed) polypeptide G 1.157
H2BC21 H2B clustered histone 21 1.128
PPM1F protein phosphatase, Mg2+/Mn2+ dependent, 1F 1.128
MORC2 MORC family CW-type zinc finger 2 1.127
RNF41 ring finger protein 41, E3 ubiquitin protein ligase 1.125
SYCE1L synaptonemal complex central element protein 1-like 1.105
CHD3 chromodomain helicase DNA binding protein 3 1.099
H2AC25 H2A clustered histone 25 1.087
POLR2J polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa 1.084
POLR2L polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa 1.079
H2AX H2A.X variant histone 1.068
SRSF10 serine/arginine-rich splicing factor 10 1.066
SAPCD1 suppressor APC domain containing 1 1.059
RASGRF1 Ras protein-specific guanine nucleotide-releasing factor 1 1.058
ANAPC10 anaphase promoting complex subunit 10 1.038
UBL5 ubiquitin-like 5 1.029
POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa 1.017
HELLS helicase, lymphoid-specific 1.012
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 1.011
HARBI1 harbinger transposase derived 1 0.991
PRDM16 PR domain containing 16 0.989
TAF11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa 0.985
NCBP2L nuclear cap binding protein subunit 2-like 0.981
PGA5 pepsinogen 5, group I (pepsinogen A) 0.975
POLR2E polymerase (RNA) II (DNA directed) polypeptide E, 25kDa 0.975
DMAP1 DNA methyltransferase 1 associated protein 1 0.971
TCEA3 transcription elongation factor A (SII), 3 0.965
NSD2 nuclear receptor binding SET domain protein 2 0.952
SKP1 S-phase kinase-associated protein 1 0.949
SETD1A SET domain containing 1A 0.938
POLR2D polymerase (RNA) II (DNA directed) polypeptide D 0.936
ODF2L outer dense fiber of sperm tails 2-like 0.925
STON1-GTF2A1L STON1-GTF2A1L readthrough 0.924
KAT5 K(lysine) acetyltransferase 5 0.918
TCEA1 transcription elongation factor A (SII), 1 0.913
NAIF1 nuclear apoptosis inducing factor 1 0.909
SCARA3 scavenger receptor class A, member 3 0.908
H1-2 H1.2 linker histone, cluster member 0.897
RGMA repulsive guidance molecule family member a 0.885
MCM9 minichromosome maintenance complex component 9 0.884
THOC3 THO complex 3 0.878
ROS1 ROS proto-oncogene 1 , receptor tyrosine kinase 0.872
ZSWIM8 zinc finger, SWIM-type containing 8 0.868
CENPA centromere protein A 0.865
JADE3 jade family PHD finger 3 0.862
SRSF1 serine/arginine-rich splicing factor 1 0.858
RNASE7 ribonuclease, RNase A family, 7 0.852
SAMD5 sterile alpha motif domain containing 5 0.847
MT1H metallothionein 1H 0.846
RASL11A RAS-like, family 11, member A 0.822
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 0.82
POT1 protection of telomeres 1 0.813
SUPT4H1 suppressor of Ty 4 homolog 1 (S. cerevisiae) 0.812
NCBP1 nuclear cap binding protein subunit 1, 80kDa 0.809
XPO5 exportin 5 0.808
TCEA2 transcription elongation factor A (SII), 2 0.798
SSRP1 structure specific recognition protein 1 0.792
CIRBP cold inducible RNA binding protein 0.785
MMP11 matrix metallopeptidase 11 0.781
GUSB glucuronidase, beta 0.78
LSM2 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) 0.776
DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha 0.772
AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase 0.772
HAT1 histone acetyltransferase 1 0.764
CDC16 cell division cycle 16 0.763
UHRF1 ubiquitin-like with PHD and ring finger domains 1 0.763
NAP1L1 nucleosome assembly protein 1-like 1 0.759
ACTR5 ARP5 actin-related protein 5 homolog (yeast) 0.754
NDOR1 NADPH dependent diflavin oxidoreductase 1 0.751
GOLPH3 golgi phosphoprotein 3 (coat-protein) 0.751
H3C7 H3 clustered histone 7 0.748
IREB2 iron-responsive element binding protein 2 0.743
RCBTB2 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 0.739
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.738
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila) 0.737
PROK2 prokineticin 2 0.735
GTF2A1 general transcription factor IIA, 1, 19/37kDa 0.735
FRG2 FSHD region gene 2 0.733
SDE2 SDE2 telomere maintenance homolog (S. pombe) 0.732
NHEJ1 nonhomologous end-joining factor 1 0.725
H1-0 H1.0 linker histone 0.718
EXO1 exonuclease 1 0.717
TMEM129 transmembrane protein 129, E3 ubiquitin protein ligase 0.715
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.714
RAD51 RAD51 recombinase 0.714
MILR1 mast cell immunoglobulin-like receptor 1 0.709
TBPL1 TBP-like 1 0.707
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 0.706
MDC1 mediator of DNA-damage checkpoint 1 0.705
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 0.703
SETD2 SET domain containing 2 0.7
PRPF3 pre-mRNA processing factor 3 0.695
RPP40 ribonuclease P/MRP 40kDa subunit 0.691
PDZD11 PDZ domain containing 11 0.689
EHMT2 euchromatic histone-lysine N-methyltransferase 2 0.689
PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 0.68
UBTF upstream binding transcription factor, RNA polymerase I 0.677
NEK5 NIMA-related kinase 5 0.675
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 0.672
SIRT7 sirtuin 7 0.671
OPRPN opiorphin prepropeptide 0.664
CDC20B cell division cycle 20B 0.664
FAM72A family with sequence similarity 72, member A 0.662
NFYA nuclear transcription factor Y, alpha 0.661
H4C7 H4 clustered histone 7 0.657
MAP3K21 mitogen-activated protein kinase kinase kinase 21 0.655
RNF168 ring finger protein 168, E3 ubiquitin protein ligase 0.655
ADCY4 adenylate cyclase 4 0.653
HNRNPK heterogeneous nuclear ribonucleoprotein K 0.652
BRCA1 breast cancer 1, early onset 0.649
DNMT3L DNA (cytosine-5-)-methyltransferase 3-like 0.645
TERT telomerase reverse transcriptase 0.641
H4C15 H4 clustered histone 15 0.639
CDCA4 cell division cycle associated 4 0.633
GTSF1 gametocyte specific factor 1 0.628
RNF8 ring finger protein 8, E3 ubiquitin protein ligase 0.627
RREB1 ras responsive element binding protein 1 0.626
JRK Jrk homolog (mouse) 0.626
NEURL3 neuralized E3 ubiquitin protein ligase 3 0.625
KAT2A K(lysine) acetyltransferase 2A 0.625
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 0.62
UPF1 UPF1 regulator of nonsense transcripts homolog (yeast) 0.617
NCBP2 nuclear cap binding protein subunit 2, 20kDa 0.609
ASF1A anti-silencing function 1A histone chaperone 0.604
POMGNT2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) 0.601
PPP3R1 protein phosphatase 3, regulatory subunit B, alpha 0.6
NAT10 N-acetyltransferase 10 (GCN5-related) 0.599
MYC v-myc avian myelocytomatosis viral oncogene homolog 0.599
PPP1R2 protein phosphatase 1, regulatory (inhibitor) subunit 2 0.598
TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa 0.597
GLMN glomulin, FKBP associated protein 0.595
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.595
CTCF CCCTC-binding factor (zinc finger protein) 0.594
TARBP2 TAR (HIV-1) RNA binding protein 2 0.592
NPIPA2 nuclear pore complex interacting protein family, member A2 0.59
GNPDA1 glucosamine-6-phosphate deaminase 1 0.59
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.585
NRDE2 NRDE-2, necessary for RNA interference, domain containing 0.584
RAD50 RAD50 homolog (S. cerevisiae) 0.578
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 0.578
YBX1 Y box binding protein 1 0.576
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 0.573
NSG2 neuronal vesicle trafficking associated 2 0.572
DDX43 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 0.57
PIWIL2 piwi-like RNA-mediated gene silencing 2 0.569
TAF1A TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa 0.567
RBM45 RNA binding motif protein 45 0.561
EXD3 exonuclease 3'-5' domain containing 3 0.557
SCMH1 sex comb on midleg homolog 1 (Drosophila) 0.556
SUMO4 small ubiquitin-like modifier 4 0.554
CHD1 chromodomain helicase DNA binding protein 1 0.551
SIRT6 sirtuin 6 0.55
TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa 0.55
XRCC4 X-ray repair complementing defective repair in Chinese hamster cells 4 0.55
TRIM39 tripartite motif containing 39 0.544
HDAC6 histone deacetylase 6 0.544
TGFBI transforming growth factor, beta-induced, 68kDa 0.541
MAP3K12 mitogen-activated protein kinase kinase kinase 12 0.538
FBL fibrillarin 0.526
PMS1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 0.524
UBXN7 UBX domain protein 7 0.523
GLYATL1 glycine-N-acyltransferase-like 1 0.52
FRG1 FSHD region gene 1 0.52
DGCR8 DGCR8 microprocessor complex subunit 0.513
WDFY2 WD repeat and FYVE domain containing 2 0.504
SETDB1 SET domain, bifurcated 1 0.503
H2AC11 H2A clustered histone 11 0.501