RNA polymerase transcription factor SL1 complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025
Category structural or functional annotations
Type cellular component
Description A RNA polymerase I-specific transcription factor complex that contains the TATA-box-binding protein (TBP) and at least three TBP-associated factors including proteins known in mammals as TAFI110, TAFI63 and TAFI48. (Gene Ontology, GO_0005668)
External Link http://amigo.geneontology.org/amigo/term/GO:0005668
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Genes

237 proteins co-occuring with the RNA polymerase transcription factor SL1 complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.

Symbol Name Standardized Value
RRN3 RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) 3.102
POLI polymerase (DNA directed) iota 3.048
TAF1A TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa 3.004
UBTF upstream binding transcription factor, RNA polymerase I 2.894
TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa 2.879
TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa 2.426
TTF1 transcription termination factor, RNA polymerase I 2.391
POLR1E polymerase (RNA) I polypeptide E, 53kDa 2.341
TBP TATA box binding protein 2.317
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 2.156
BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2.05
POLR1A polymerase (RNA) I polypeptide A, 194kDa 1.969
POLR1F RNA polymerase I subunit F 1.915
GTF3C1 general transcription factor IIIC, polypeptide 1, alpha 220kDa 1.758
PCNX2 pecanex 2 1.699
BAZ2A bromodomain adjacent to zinc finger domain, 2A 1.68
RPL11 ribosomal protein L11 1.564
FBL fibrillarin 1.534
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 1.526
GTF2B general transcription factor IIB 1.523
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1.523
POLR1G RNA polymerase I subunit G 1.503
KAT2B K(lysine) acetyltransferase 2B 1.489
HSF2 heat shock transcription factor 2 1.46
SIRT7 sirtuin 7 1.457
RPL5 ribosomal protein L5 1.454
RRP9 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) 1.404
AK8 adenylate kinase 8 1.393
TP53 tumor protein p53 1.364
GNL3 guanine nucleotide binding protein-like 3 (nucleolar) 1.344
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 1.333
URB2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) 1.329
MAPK9 mitogen-activated protein kinase 9 1.323
RPS6 ribosomal protein S6 1.286
UTP4 UTP4 small subunit processome component 1.273
NOL11 nucleolar protein 11 1.255
NOL6 nucleolar protein 6 (RNA-associated) 1.254
UTP14A UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) 1.237
BOP1 block of proliferation 1 1.236
WDR12 WD repeat domain 12 1.227
CTDP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 1.222
H1-0 H1.0 linker histone 1.209
RPL38 ribosomal protein L38 1.193
MTOR mechanistic target of rapamycin (serine/threonine kinase) 1.174
ERCC3 excision repair cross-complementation group 3 1.167
TCOF1 Treacher Collins-Franceschetti syndrome 1 1.166
GTF3A general transcription factor IIIA 1.158
DDX56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 1.155
MYC v-myc avian myelocytomatosis viral oncogene homolog 1.15
POLR1B polymerase (RNA) I polypeptide B, 128kDa 1.133
RPS24 ribosomal protein S24 1.13
ZBTB41 zinc finger and BTB domain containing 41 1.127
TRIM28 tripartite motif containing 28 1.118
MAX MYC associated factor X 1.117
RRS1 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) 1.104
RIOK1 RIO kinase 1 1.102
RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1 1.089
RPS14 ribosomal protein S14 1.08
DKC1 dyskeratosis congenita 1, dyskerin 1.073
RRP7A ribosomal RNA processing 7 homolog A (S. cerevisiae) 1.067
TAS2R3 taste receptor, type 2, member 3 1.062
CDK1 cyclin-dependent kinase 1 1.049
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa 1.023
CACFD1 calcium channel flower domain containing 1 1.016
RPL14 ribosomal protein L14 1.007
RPL15 ribosomal protein L15 1.005
CHD4 chromodomain helicase DNA binding protein 4 1.003
TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 0.995
RPS6KB2 ribosomal protein S6 kinase, 70kDa, polypeptide 2 0.991
CDK2 cyclin-dependent kinase 2 0.98
WRN Werner syndrome, RecQ helicase-like 0.969
RB1 retinoblastoma 1 0.962
UTP14C UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast) 0.959
TM2D1 TM2 domain containing 1 0.953
SIRT2 sirtuin 2 0.949
ZNF407 zinc finger protein 407 0.936
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 0.927
PDCD2L programmed cell death 2-like 0.922
RPS19 ribosomal protein S19 0.915
BABAM2 BRISC and BRCA1 A complex member 2 0.908
ZFP82 ZFP82 zinc finger protein 0.905
KDM2A lysine (K)-specific demethylase 2A 0.904
PCNX1 pecanex 1 0.902
LRRC34 leucine rich repeat containing 34 0.898
H4C7 H4 clustered histone 7 0.892
CDC14A cell division cycle 14A 0.886
GTF3C4 general transcription factor IIIC, polypeptide 4, 90kDa 0.885
RASL11A RAS-like, family 11, member A 0.882
PES1 pescadillo ribosomal biogenesis factor 1 0.881
CDKN2A cyclin-dependent kinase inhibitor 2A 0.879
H1-4 H1.4 linker histone, cluster member 0.879
H4C15 H4 clustered histone 15 0.874
RAD9B RAD9 homolog B (S. pombe) 0.872
EBNA1BP2 EBNA1 binding protein 2 0.871
TAPT1 transmembrane anterior posterior transformation 1 0.862
RPL34 ribosomal protein L34 0.858
TCEA2 transcription elongation factor A (SII), 2 0.858
H3C13 H3 clustered histone 13 0.857
H3-7 H3.7 histone (putative) 0.857
H3-5 H3.5 histone 0.857
H3-4 H3.4 histone, cluster member 0.856
TCEA3 transcription elongation factor A (SII), 3 0.85
H3C7 H3 clustered histone 7 0.848
H3-3B H3.3 histone B 0.847
ATM ATM serine/threonine kinase 0.843
RPS6KA1 ribosomal protein S6 kinase, 90kDa, polypeptide 1 0.842
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) 0.842
ERCC2 excision repair cross-complementation group 2 0.838
NMD3 NMD3 ribosome export adaptor 0.829
SIRT1 sirtuin 1 0.827
TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa 0.825
RBIS ribosomal biogenesis factor 0.824
BYSL bystin-like 0.821
PDCD11 programmed cell death 11 0.819
ERCC6 excision repair cross-complementation group 6 0.816
TCEA1 transcription elongation factor A (SII), 1 0.798
TAS2R1 taste receptor, type 2, member 1 0.795
CDK4 cyclin-dependent kinase 4 0.791
TRRAP transformation/transcription domain-associated protein 0.788
TSR3 TSR3, 20S rRNA accumulation, homolog (S. cerevisiae) 0.785
RPS17 ribosomal protein S17 0.781
KAT2A K(lysine) acetyltransferase 2A 0.779
RPS6KA2 ribosomal protein S6 kinase, 90kDa, polypeptide 2 0.776
EEF2K eukaryotic elongation factor 2 kinase 0.773
OARD1 O-acyl-ADP-ribose deacylase 1 0.765
WDR75 WD repeat domain 75 0.765
MAF1 MAF1 homolog (S. cerevisiae) 0.761
PGAM2 phosphoglycerate mutase 2 (muscle) 0.756
RPS2 ribosomal protein S2 0.754
SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 0.747
SIRT6 sirtuin 6 0.745
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog 0.744
NOM1 nucleolar protein with MIF4G domain 1 0.739
CDK7 cyclin-dependent kinase 7 0.737
HDAC1 histone deacetylase 1 0.728
RPS8 ribosomal protein S8 0.727
ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) 0.726
HOXA10 homeobox A10 0.723
TAF13 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa 0.72
KAT6A K(lysine) acetyltransferase 6A 0.717
GNL3L guanine nucleotide binding protein-like 3 (nucleolar)-like 0.715
CDK9 cyclin-dependent kinase 9 0.714
UTP15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 0.708
EIF4B eukaryotic translation initiation factor 4B 0.708
TYMS thymidylate synthetase 0.708
UTP20 UTP20, small subunit (SSU) processome component, homolog (yeast) 0.706
MRPL39 mitochondrial ribosomal protein L39 0.705
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 0.701
UTP25 UTP25 small subunit processome component 0.701
RPS23 ribosomal protein S23 0.701
TOP1 topoisomerase (DNA) I 0.7
HYPK huntingtin interacting protein K 0.699
NADSYN1 NAD synthetase 1 0.693
PTEN phosphatase and tensin homolog 0.693
KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) 0.688
ANG angiogenin, ribonuclease, RNase A family, 5 0.687
EFL1 elongation factor like GTPase 1 0.687
WDR3 WD repeat domain 3 0.678
MTMR4 myotubularin related protein 4 0.677
ANAPC13 anaphase promoting complex subunit 13 0.676
RPS26 ribosomal protein S26 0.674
EP300 E1A binding protein p300 0.674
JUN jun proto-oncogene 0.668
NOL9 nucleolar protein 9 0.664
STK11 serine/threonine kinase 11 0.664
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila) 0.661
RPL26 ribosomal protein L26 0.654
E2F1 E2F transcription factor 1 0.649
RPS10 ribosomal protein S10 0.648
DDX27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 0.646
EIF4A1 eukaryotic translation initiation factor 4A1 0.637
KAT5 K(lysine) acetyltransferase 5 0.637
RPS3 ribosomal protein S3 0.635
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 0.63
RSL1D1 ribosomal L1 domain containing 1 0.626
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 0.624
TAF11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa 0.623
PTK6 protein tyrosine kinase 6 0.623
NOP10 NOP10 ribonucleoprotein 0.622
NUDT16 nudix (nucleoside diphosphate linked moiety X)-type motif 16 0.614
EHMT2 euchromatic histone-lysine N-methyltransferase 2 0.613
HBP1 HMG-box transcription factor 1 0.613
POLR1D polymerase (RNA) I polypeptide D, 16kDa 0.612
NOP53 NOP53 ribosome biogenesis factor 0.61
POLR3K polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa 0.608
GNL1 guanine nucleotide binding protein-like 1 0.607
POLR2M polymerase (RNA) II (DNA directed) polypeptide M 0.607
WDR43 WD repeat domain 43 0.607
CLSTN1 calsyntenin 1 0.606
PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta 0.606
SSRP1 structure specific recognition protein 1 0.605
RPS20 ribosomal protein S20 0.603
RPL10A ribosomal protein L10a 0.602
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 0.602
DDX18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 0.596
POLR2K polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa 0.596
FASN fatty acid synthase 0.594
RRP8 ribosomal RNA processing 8, methyltransferase, homolog (yeast) 0.592
DDX52 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 0.59
NOP14 NOP14 nucleolar protein 0.589
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha 0.588
PWP2 PWP2 periodic tryptophan protein homolog (yeast) 0.586
MYDGF myeloid-derived growth factor 0.585
AKT1 v-akt murine thymoma viral oncogene homolog 1 0.585
HEATR1 HEAT repeat containing 1 0.582
PARP1 poly (ADP-ribose) polymerase 1 0.578
TSR2 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) 0.571
RPL4 ribosomal protein L4 0.571
CCND1 cyclin D1 0.57
BMS1 BMS1 ribosome biogenesis factor 0.569
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.567
RSL24D1 ribosomal L24 domain containing 1 0.564
YEATS2 YEATS domain containing 2 0.562
PNO1 partner of NOB1 homolog (S. cerevisiae) 0.561
DDTL D-dopachrome tautomerase-like 0.561
BRCA1 breast cancer 1, early onset 0.556
RPL41 ribosomal protein L41 0.553
TRMU tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase 0.552
RUNX2 runt-related transcription factor 2 0.551
MYOD1 myogenic differentiation 1 0.548
CEBPD CCAAT/enhancer binding protein (C/EBP), delta 0.537
TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa 0.537
RPF2 ribosome production factor 2 homolog (S. cerevisiae) 0.536
RPH3AL rabphilin 3A-like (without C2 domains) 0.536
NIFK nucleolar protein interacting with the FHA domain of MKI67 0.535
RPS18 ribosomal protein S18 0.533
MYO9A myosin IXA 0.523
MACROD1 MACRO domain containing 1 0.523
FOXO1 forkhead box O1 0.521
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.519
PPAN-P2RY11 PPAN-P2RY11 readthrough 0.519
ZBTB10 zinc finger and BTB domain containing 10 0.518
SLC35B2 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 0.514
ANAPC1 anaphase promoting complex subunit 1 0.513
BRDT bromodomain, testis-specific 0.504
DNAH8 dynein, axonemal, heavy chain 8 0.504
CAPN3 calpain 3, (p94) 0.5