RT-112 Gene Set
Genes
25 genes with high or low copy number in RT-112 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
high copy number
| Symbol |
Name |
Standardized Value |
|
PARVA
|
parvin, alpha
|
2.76305
|
|
MICALCL
|
MICAL C-terminal like
|
2.76305
|
|
CDRT7
|
CMT1A duplicated region transcript 7 (non-protein coding)
|
2.10038
|
|
MIR4731
|
microRNA 4731
|
2.10038
|
|
CDRT4
|
CMT1A duplicated region transcript 4
|
2.10038
|
|
TVP23C
|
trans-golgi network vesicle protein 23 homolog C (S. cerevisiae)
|
2.10038
|
|
TVP23C-CDRT4
|
TVP23C-CDRT4 readthrough
|
2.10038
|
|
TEKT3
|
tektin 3
|
2.09431
|
|
PMP22
|
peripheral myelin protein 22
|
2.09431
|
|
EPN2
|
epsin 2
|
2.08806
|
|
MAPK7
|
mitogen-activated protein kinase 7
|
2.08781
|
|
MFAP4
|
microfibrillar-associated protein 4
|
2.08781
|
|
MIR1180
|
microRNA 1180
|
2.08781
|
|
RNF112
|
ring finger protein 112
|
2.08781
|
|
B9D1
|
B9 protein domain 1
|
2.08781
|
|
SLC47A1
|
solute carrier family 47 (multidrug and toxin extrusion), member 1
|
2.08712
|
|
SNORA59A
|
small nucleolar RNA, H/ACA box 59A
|
2.08712
|
|
ALDH3A2
|
aldehyde dehydrogenase 3 family, member A2
|
2.08391
|
low copy number
| Symbol |
Name |
Standardized Value |
|
PSIP1
|
PC4 and SFRS1 interacting protein 1
|
-3.08391
|
|
CCDC171
|
coiled-coil domain containing 171
|
-3.04765
|
|
FAM86DP
|
family with sequence similarity 86, member D, pseudogene
|
-2.84592
|
|
SPATA31A6
|
SPATA31 subfamily A, member 6
|
-2.83114
|
|
CNTNAP3B
|
contactin associated protein-like 3B
|
-2.7778
|
|
IFNA1
|
interferon, alpha 1
|
-2.72828
|
|
IFNE
|
interferon, epsilon
|
-2.72466
|
