Radotinib_CHP-212 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Radotinib perturbation in CHP-212 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Radotinib_CHP-212 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 0.146858
MAP1B microtubule-associated protein 1B 0.093876
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0929944
NALF1 NALCN channel auxiliary factor 1 0.0855086
IGF2 insulin-like growth factor 2 0.0773216
GULP1 GULP, engulfment adaptor PTB domain containing 1 0.0765813
AKAP12 A kinase (PRKA) anchor protein 12 0.0669094
KPNB1 karyopherin (importin) beta 1 0.0614237
GPC5 glypican 5 0.0543676
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0541061
SOS1 son of sevenless homolog 1 (Drosophila) 0.053929
NAMPT nicotinamide phosphoribosyltransferase 0.0526319
EEF2 eukaryotic translation elongation factor 2 0.0506097
TRIO trio Rho guanine nucleotide exchange factor 0.0504355
PKM pyruvate kinase, muscle 0.0487933
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.0479183
FMN1 formin 1 0.0474764
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0433005
CEMIP cell migration inducing protein, hyaluronan binding 0.0429123
APP amyloid beta (A4) precursor protein 0.0416769
BIRC6 baculoviral IAP repeat containing 6 0.0389952
GOLGA4 golgin A4 0.0383581
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0374217
PLEKHA5 pleckstrin homology domain containing, family A member 5 0.0364149
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 0.0360391
THSD4 thrombospondin, type I, domain containing 4 0.0356493
FHIT fragile histidine triad 0.0352211
PRRC2B proline-rich coiled-coil 2B 0.0349967
KTN1 kinectin 1 (kinesin receptor) 0.0348642
DNMBP dynamin binding protein 0.0343651
DPH6 diphthamine biosynthesis 6 0.0342521
IFI16 interferon, gamma-inducible protein 16 0.0334896
MEF2A myocyte enhancer factor 2A 0.0334042
CRH corticotropin releasing hormone 0.0333771
ADARB1 adenosine deaminase, RNA-specific, B1 0.0319708
TIMP3 TIMP metallopeptidase inhibitor 3 0.0313069
MX1 MX dynamin-like GTPase 1 0.0312691
MMP2 matrix metallopeptidase 2 0.0311812
TCF12 transcription factor 12 0.0311222
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0308703
EIF1 eukaryotic translation initiation factor 1 0.0306943
TPR translocated promoter region, nuclear basket protein 0.0304937
USP34 ubiquitin specific peptidase 34 0.0302392
COL4A5 collagen, type IV, alpha 5 0.0302348
B2M beta-2-microglobulin 0.0301479
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0301058
PRRC2C proline-rich coiled-coil 2C 0.0300234
LOC112694756 uncharaterized LOC112694756 0.0300065
LIMCH1 LIM and calponin homology domains 1 0.0298422
ZBTB20 zinc finger and BTB domain containing 20 0.0297298
AMOTL1 angiomotin like 1 0.0297093
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.0288023
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 0.0287223
RBM20 RNA binding motif protein 20 0.028131
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0278957
PTPRE protein tyrosine phosphatase, receptor type, E 0.0274915
IFI44L interferon-induced protein 44-like 0.0274019
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0273683
SET SET nuclear proto-oncogene 0.0270874
CDK19 cyclin-dependent kinase 19 0.0270563
ANO6 anoctamin 6 0.0267303
LRFN5 leucine rich repeat and fibronectin type III domain containing 5 0.0264976
TMTC2 transmembrane and tetratricopeptide repeat containing 2 0.0264201
AOPEP aminopeptidase O (putative) 0.0263248
MATR3 matrin 3 0.0262407
ITFG1 integrin alpha FG-GAP repeat containing 1 0.0261986
RSL1D1 ribosomal L1 domain containing 1 0.0260262
CAMSAP2 calmodulin regulated spectrin-associated protein family, member 2 0.0256801
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0255611
RPL35A ribosomal protein L35a 0.0254385
CENPF centromere protein F, 350/400kDa 0.0252597
INVS inversin 0.025256
PHIP pleckstrin homology domain interacting protein 0.0247694
MYO6 myosin VI 0.0243774
MYO9B myosin IXB 0.0243773
RPS12 ribosomal protein S12 0.0242557
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) 0.0241035
LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 0.0238194
RPS3 ribosomal protein S3 0.0237795
DLG1 discs, large homolog 1 (Drosophila) 0.0236661
RPS6 ribosomal protein S6 0.0235625
ARB2A ARB2 cotranscriptional regulator A 0.0235124
NF1 neurofibromin 1 0.023309
TRPA1 transient receptor potential cation channel, subfamily A, member 1 0.0232602
ANGPT1 angiopoietin 1 0.0232434
CD36 CD36 molecule (thrombospondin receptor) 0.0229576
PTMA prothymosin, alpha 0.0229487
H3-3B H3.3 histone B 0.022816
TXNRD1 thioredoxin reductase 1 0.0227622
ARID4B AT rich interactive domain 4B (RBP1-like) 0.0226638
ANP32E acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 0.022626
SHPRH SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase 0.0225614
FBXL17 F-box and leucine-rich repeat protein 17 0.0225409
SRPK2 SRSF protein kinase 2 0.0225277
ZNF292 zinc finger protein 292 0.0223619
PCNX1 pecanex 1 0.0223102
ARHGAP5 Rho GTPase activating protein 5 0.0222935
PACS1 phosphofurin acidic cluster sorting protein 1 0.0222211
SPOP speckle-type POZ protein 0.0221574
CARD16 caspase recruitment domain family, member 16 0.0220724

decreased expression

Symbol Name Standardized Value
VCL vinculin -0.187098
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0974475
TLE4 transducin-like enhancer of split 4 -0.0920776
LINGO2 leucine rich repeat and Ig domain containing 2 -0.0852994
EXT1 exostosin glycosyltransferase 1 -0.0822607
FNDC3A fibronectin type III domain containing 3A -0.0776661
PRKCA protein kinase C, alpha -0.069748
VMP1 vacuole membrane protein 1 -0.0607623
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0559962
TPM1 tropomyosin 1 (alpha) -0.0497534
FNDC3B fibronectin type III domain containing 3B -0.0478371
AEBP2 AE binding protein 2 -0.0458675
RNF150 ring finger protein 150 -0.0452329
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0450219
MYO1E myosin IE -0.0426001
TRIB2 tribbles pseudokinase 2 -0.0419964
INTS6 integrator complex subunit 6 -0.0408177
PCDH9 protocadherin 9 -0.0406256
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0390396
IGF1R insulin-like growth factor 1 receptor -0.039024
RPTOR regulatory associated protein of MTOR, complex 1 -0.0378201
PTPRD protein tyrosine phosphatase, receptor type, D -0.0372895
RAP1B RAP1B, member of RAS oncogene family -0.0372224
ACTG1 actin gamma 1 -0.0360491
GOLGB1 golgin B1 -0.0354263
MCL1 myeloid cell leukemia 1 -0.0347209
FERMT2 fermitin family member 2 -0.0342224
PDLIM5 PDZ and LIM domain 5 -0.0337275
STK38L serine/threonine kinase 38 like -0.0337224
CTNND1 catenin (cadherin-associated protein), delta 1 -0.0331899
RGS4 regulator of G-protein signaling 4 -0.0328949
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.03288
FAM107B family with sequence similarity 107, member B -0.0327543
CTBP2 C-terminal binding protein 2 -0.0325642
GLS2 glutaminase 2 (liver, mitochondrial) -0.0322357
DTNA dystrobrevin, alpha -0.0312508
ACTN1 actinin, alpha 1 -0.0306492
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -0.0303399
PTPRM protein tyrosine phosphatase, receptor type, M -0.0303312
MAML2 mastermind-like 2 (Drosophila) -0.0302814
MAPK10 mitogen-activated protein kinase 10 -0.0301982
FRMD4A FERM domain containing 4A -0.0294659
PPP6R3 protein phosphatase 6, regulatory subunit 3 -0.0282838
NPEPPS aminopeptidase puromycin sensitive -0.0279417
DIAPH2 diaphanous-related formin 2 -0.0278159
ANK2 ankyrin 2, neuronal -0.0277002
NPAS2 neuronal PAS domain protein 2 -0.0274411
LSAMP limbic system-associated membrane protein -0.0274289
RPL23 ribosomal protein L23 -0.0274106
GSE1 Gse1 coiled-coil protein -0.0273753
LPIN1 lipin 1 -0.0269258
USP9X ubiquitin specific peptidase 9, X-linked -0.0268523
PRKCE protein kinase C, epsilon -0.0266573
SOX9 SRY (sex determining region Y)-box 9 -0.0266454
GLCCI1 glucocorticoid induced 1 -0.0263048
KDM3A lysine (K)-specific demethylase 3A -0.0262
GMDS GDP-mannose 4,6-dehydratase -0.0257994
GATAD2B GATA zinc finger domain containing 2B -0.0257737
KIAA1217 KIAA1217 -0.0252704
PCDH7 protocadherin 7 -0.0249515
SCG2 secretogranin II -0.0248022
MARCHF6 membrane associated ring-CH-type finger 6 -0.0247646
ATF7IP2 activating transcription factor 7 interacting protein 2 -0.0245941
ZNF804A zinc finger protein 804A -0.0245707
BRWD1 bromodomain and WD repeat domain containing 1 -0.0240919
KDM4C lysine (K)-specific demethylase 4C -0.0240564
ACTR3 ARP3 actin-related protein 3 homolog (yeast) -0.0240525
SCN9A sodium channel, voltage gated, type IX alpha subunit -0.0239144
DIPK2A divergent protein kinase domain 2A -0.023666
MED13L mediator complex subunit 13-like -0.0236466
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0235871
LMNA lamin A/C -0.0235483
ZC3H11A zinc finger CCCH-type containing 11A -0.0234211
MAP3K13 mitogen-activated protein kinase kinase kinase 13 -0.0232545
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 -0.0232336
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) -0.0232216
CHD6 chromodomain helicase DNA binding protein 6 -0.0231934
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0230292
LARGE1 LARGE xylosyl- and glucuronyltransferase 1 -0.0227552
AHR aryl hydrocarbon receptor -0.022641
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0224605
IRS1 insulin receptor substrate 1 -0.0223262
SOD2 superoxide dismutase 2, mitochondrial -0.0221197
USP15 ubiquitin specific peptidase 15 -0.0220052
RPL9 ribosomal protein L9 -0.0218673
PDE4D phosphodiesterase 4D, cAMP-specific -0.0217988
MBNL1 muscleblind-like splicing regulator 1 -0.0217091
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0216034
DST dystonin -0.0215243
NREP neuronal regeneration related protein -0.0214459
TRIP12 thyroid hormone receptor interactor 12 -0.0213379
DACH2 dachshund family transcription factor 2 -0.0211105
RNF145 ring finger protein 145 -0.0209958
MED13 mediator complex subunit 13 -0.0209784
LRP1B low density lipoprotein receptor-related protein 1B -0.0208934
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0208875
PELO pelota homolog (Drosophila) -0.0208575
KLF7 Kruppel-like factor 7 (ubiquitous) -0.0208233
LGR5 leucine-rich repeat containing G protein-coupled receptor 5 -0.0207998
EFNA5 ephrin-A5 -0.0207733