Radotinib_NCI-H23 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Radotinib perturbation in NCI-H23 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Radotinib_NCI-H23 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.347723
ERRFI1 ERBB receptor feedback inhibitor 1 0.0845636
RPS4X ribosomal protein S4, X-linked 0.0731591
THSD4 thrombospondin, type I, domain containing 4 0.0647233
EGR1 early growth response 1 0.0539972
EEF2 eukaryotic translation elongation factor 2 0.0520609
RPS3 ribosomal protein S3 0.0488983
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0482644
OSMR oncostatin M receptor 0.0404537
POTEF POTE ankyrin domain family, member F 0.0390976
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.038309
EGFR epidermal growth factor receptor 0.0376261
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 0.0373629
AFF3 AF4/FMR2 family, member 3 0.0344425
PDE10A phosphodiesterase 10A 0.0315174
FMNL2 formin-like 2 0.0312957
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.0304682
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0293862
RNF213 ring finger protein 213 0.0290291
SMAD3 SMAD family member 3 0.028559
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0281094
VMP1 vacuole membrane protein 1 0.0276601
ATP11A ATPase, class VI, type 11A 0.0274932
NTSR1 neurotensin receptor 1 (high affinity) 0.0273059
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 0.0272678
ATP13A3 ATPase type 13A3 0.0271621
VCL vinculin 0.0242873
EXT1 exostosin glycosyltransferase 1 0.0240453
SHB Src homology 2 domain containing adaptor protein B 0.023797
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0236825
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0233228
MYH9 myosin, heavy chain 9, non-muscle 0.0232244
UBAP2L ubiquitin associated protein 2-like 0.0231359
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0231226
LOXL2 lysyl oxidase-like 2 0.0224384
HMGA2 high mobility group AT-hook 2 0.0223794
RAB7A RAB7A, member RAS oncogene family 0.0222852
FOS FBJ murine osteosarcoma viral oncogene homolog 0.022121
RPL3 ribosomal protein L3 0.0218605
NABP1 nucleic acid binding protein 1 0.0218041
MAP3K20 mitogen-activated protein kinase kinase kinase 20 0.0217773
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0215404
RABGAP1L RAB GTPase activating protein 1-like 0.0215119
DOCK5 dedicator of cytokinesis 5 0.0206316
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.0203546
PRRC2B proline-rich coiled-coil 2B 0.0201636
RPS7 ribosomal protein S7 0.0199636
LOC112694756 uncharaterized LOC112694756 0.0199112
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.019313
IFI6 interferon, alpha-inducible protein 6 0.0192622
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) 0.0191508
MCL1 myeloid cell leukemia 1 0.0188873
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.018867
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0188503
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 0.0187251
PKM pyruvate kinase, muscle 0.0187249
NR4A3 nuclear receptor subfamily 4, group A, member 3 0.0186235
TCIM transcriptional and immune response regulator 0.0180483
ACTN1 actinin, alpha 1 0.0180295
HDAC4 histone deacetylase 4 0.0179623
SHC1 SHC (Src homology 2 domain containing) transforming protein 1 0.0174294
SFPQ splicing factor proline/glutamine-rich 0.0173734
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0172979
KLF6 Kruppel-like factor 6 0.0170875
FNDC3B fibronectin type III domain containing 3B 0.0168136
PTPRF protein tyrosine phosphatase, receptor type, F 0.0167377
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) 0.0164299
RBM19 RNA binding motif protein 19 0.0163832
CCNL1 cyclin L1 0.0162878
IGF1R insulin-like growth factor 1 receptor 0.0161011
GRAMD1B GRAM domain containing 1B 0.0160649
WWOX WW domain containing oxidoreductase 0.0160495
EPAS1 endothelial PAS domain protein 1 0.0160301
PRRC2A proline-rich coiled-coil 2A 0.0159519
PMEPA1 prostate transmembrane protein, androgen induced 1 0.015951
RIMS2 regulating synaptic membrane exocytosis 2 0.0159125
JUN jun proto-oncogene 0.015651
ENO1 enolase 1, (alpha) 0.0156334
AGRN agrin 0.0156181
SHANK2 SH3 and multiple ankyrin repeat domains 2 0.0155546
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 0.0155323
NAP1L1 nucleosome assembly protein 1-like 1 0.015348
LPP LIM domain containing preferred translocation partner in lipoma 0.0152921
FTL ferritin, light polypeptide 0.0152129
SPRED2 sprouty-related, EVH1 domain containing 2 0.0151236
CUL4A cullin 4A 0.0151215
DPYSL2 dihydropyrimidinase-like 2 0.0150552
MEF2D myocyte enhancer factor 2D 0.0148576
EML4 echinoderm microtubule associated protein like 4 0.014719
ARB2A ARB2 cotranscriptional regulator A 0.0145954
INTS6 integrator complex subunit 6 0.0145874
LIF leukemia inhibitory factor 0.0145438
NR4A1 nuclear receptor subfamily 4, group A, member 1 0.0144259
MT2A metallothionein 2A 0.0143545
NRDC nardilysin convertase 0.0141949
PHF14 PHD finger protein 14 0.0140361
HLA-C major histocompatibility complex, class I, C 0.0138339
HCFC1 host cell factor C1 0.0138309
LIMA1 LIM domain and actin binding 1 0.0137676
MYC v-myc avian myelocytomatosis viral oncogene homolog 0.0137278

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.252097
TFPI2 tissue factor pathway inhibitor 2 -0.223513
PTMA prothymosin, alpha -0.0802878
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0802816
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0783531
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0748556
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0726542
KTN1 kinectin 1 (kinesin receptor) -0.0723366
NIPBL Nipped-B homolog (Drosophila) -0.0685475
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0629007
XPO1 exportin 1 -0.0570315
MKI67 marker of proliferation Ki-67 -0.0566725
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0561011
ACTR2 ARP2 actin-related protein 2 homolog (yeast) -0.0546895
PHIP pleckstrin homology domain interacting protein -0.0527813
RPS21 ribosomal protein S21 -0.0511966
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 -0.0510647
RPL38 ribosomal protein L38 -0.0467038
UBC ubiquitin C -0.0460934
RTN4 reticulon 4 -0.0442678
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0442161
KDM2A lysine (K)-specific demethylase 2A -0.0440714
BBX bobby sox homolog (Drosophila) -0.0439752
CENPF centromere protein F, 350/400kDa -0.0437036
KDM3A lysine (K)-specific demethylase 3A -0.0434943
SMC4 structural maintenance of chromosomes 4 -0.0423416
CLTC clathrin, heavy chain (Hc) -0.0420675
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0411545
GOLGA4 golgin A4 -0.0403009
CCT4 chaperonin containing TCP1, subunit 4 (delta) -0.039906
ARID2 AT rich interactive domain 2 (ARID, RFX-like) -0.0396038
OGA O-GlcNAcase -0.0383127
ATP5F1B ATP synthase F1 subunit beta -0.0376197
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 -0.0374531
RPS8 ribosomal protein S8 -0.037245
ANKRD12 ankyrin repeat domain 12 -0.0369597
WDPCP WD repeat containing planar cell polarity effector -0.0369158
ZFAND3 zinc finger, AN1-type domain 3 -0.0367891
SRPK1 SRSF protein kinase 1 -0.0363822
CAMTA1 calmodulin binding transcription activator 1 -0.0362789
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0351498
DLGAP5 discs, large (Drosophila) homolog-associated protein 5 -0.03509
RPS2 ribosomal protein S2 -0.0347696
RPS15 ribosomal protein S15 -0.0346616
TXNRD1 thioredoxin reductase 1 -0.0346283
NCAPD2 non-SMC condensin I complex, subunit D2 -0.0346033
VIM vimentin -0.0345646
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0339091
TM4SF1 transmembrane 4 L six family member 1 -0.033863
SCAF11 SR-related CTD-associated factor 11 -0.0335052
RPS29 ribosomal protein S29 -0.0334412
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 -0.033171
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0330545
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 -0.0329221
WNK1 WNK lysine deficient protein kinase 1 -0.032878
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 -0.0328575
PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform -0.0328044
WDR45B WD repeat domain 45B -0.0327606
RPLP0 ribosomal protein, large, P0 -0.0323569
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 -0.0310165
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0308944
RPS6 ribosomal protein S6 -0.030303
SPAG9 sperm associated antigen 9 -0.0303012
MNAT1 MNAT CDK-activating kinase assembly factor 1 -0.0301878
CTTN cortactin -0.0301211
MYL12B myosin, light chain 12B, regulatory -0.0299794
TPX2 TPX2, microtubule-associated -0.0297574
RB1CC1 RB1-inducible coiled-coil 1 -0.0296195
SEPTIN7 septin 7 -0.0294855
RPL19 ribosomal protein L19 -0.0292555
SGO2 shugoshin 2 -0.0289924
PCBP2 poly(rC) binding protein 2 -0.028968
AP2B1 adaptor-related protein complex 2, beta 1 subunit -0.0289081
ZFR zinc finger RNA binding protein -0.0287386
RPL8 ribosomal protein L8 -0.028713
TUBA1B tubulin, alpha 1b -0.0285888
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -0.028408
PTGES3 prostaglandin E synthase 3 (cytosolic) -0.0283385
MTPN myotrophin -0.0282197
RPS27A ribosomal protein S27a -0.0281525
MIS18BP1 MIS18 binding protein 1 -0.0281318
CKAP5 cytoskeleton associated protein 5 -0.028075
RPS10 ribosomal protein S10 -0.0279489
PPP6R3 protein phosphatase 6, regulatory subunit 3 -0.0278462
PRRC2C proline-rich coiled-coil 2C -0.0278026
CANX calnexin -0.0276722
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) -0.0276205
TPI1 triosephosphate isomerase 1 -0.0275748
EIF1 eukaryotic translation initiation factor 1 -0.0274787
CCND2 cyclin D2 -0.0273135
KIF5B kinesin family member 5B -0.0271586
RAB10 RAB10, member RAS oncogene family -0.0271045
RECQL RecQ helicase-like -0.0269447
GOLT1B golgi transport 1B -0.026911
KMT2E lysine (K)-specific methyltransferase 2E -0.026712
CEP192 centrosomal protein 192kDa -0.0266807
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0266759
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa -0.0264917
SRP72 signal recognition particle 72kDa -0.0261478
H3-3B H3.3 histone B -0.0260286