Radotinib_SNU-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Radotinib perturbation in SNU-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Radotinib_SNU-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PKM pyruvate kinase, muscle 0.202094
MINDY2 MINDY lysine 48 deubiquitinase 2 0.124982
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.121831
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.110869
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.105693
ANXA1 annexin A1 0.097286
TMSB4X thymosin beta 4, X-linked 0.0896846
ADAM10 ADAM metallopeptidase domain 10 0.0836797
MKI67 marker of proliferation Ki-67 0.0765445
KIF5B kinesin family member 5B 0.070886
LOC112694756 uncharaterized LOC112694756 0.0673265
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0672248
POTEF POTE ankyrin domain family, member F 0.0669756
RPS6 ribosomal protein S6 0.064172
EZR ezrin 0.0637985
ECT2 epithelial cell transforming 2 0.0637554
EEF2 eukaryotic translation elongation factor 2 0.0630704
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0603497
HSPA8 heat shock 70kDa protein 8 0.0589603
ZNF292 zinc finger protein 292 0.0561587
RHOA ras homolog family member A 0.0552551
NAV2 neuron navigator 2 0.0524804
RPL3 ribosomal protein L3 0.0519145
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.050238
CNOT6L CCR4-NOT transcription complex, subunit 6-like 0.0489207
RLF rearranged L-myc fusion 0.0464013
SSBP2 single-stranded DNA binding protein 2 0.045949
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0447644
NCOR1 nuclear receptor corepressor 1 0.0436093
CENPF centromere protein F, 350/400kDa 0.0431993
FXR1 fragile X mental retardation, autosomal homolog 1 0.0430852
RSL1D1 ribosomal L1 domain containing 1 0.0423044
ASXL1 additional sex combs like transcriptional regulator 1 0.0416205
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0413814
SIK3 SIK family kinase 3 0.0405315
ARID2 AT rich interactive domain 2 (ARID, RFX-like) 0.0404476
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0394254
SHC1 SHC (Src homology 2 domain containing) transforming protein 1 0.0383388
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0380287
WDR43 WD repeat domain 43 0.0376435
NCAPD2 non-SMC condensin I complex, subunit D2 0.0368442
KPNB1 karyopherin (importin) beta 1 0.0359871
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.035791
TAC4 tachykinin 4 (hemokinin) 0.0356648
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 0.0350276
TPX2 TPX2, microtubule-associated 0.0348051
EVI5 ecotropic viral integration site 5 0.0346849
MORF4L2 mortality factor 4 like 2 0.0343004
QKI QKI, KH domain containing, RNA binding 0.0341197
MXI1 MAX interactor 1, dimerization protein 0.0339872
NAMPT nicotinamide phosphoribosyltransferase 0.0337978
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0332374
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0330315
ERC2 ELKS/RAB6-interacting/CAST family member 2 0.0327674
PGK1 phosphoglycerate kinase 1 0.0322904
FAM162A family with sequence similarity 162, member A 0.0319552
RHEB Ras homolog enriched in brain 0.0318654
LDHA lactate dehydrogenase A 0.0315221
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.0313184
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0310179
RAD21 RAD21 homolog (S. pombe) 0.0309701
BMP2K BMP2 inducible kinase 0.030969
EIF1 eukaryotic translation initiation factor 1 0.0305923
SPRY2 sprouty homolog 2 (Drosophila) 0.030567
STAT1 signal transducer and activator of transcription 1, 91kDa 0.030346
RNF145 ring finger protein 145 0.0302214
TFG TRK-fused gene 0.0301817
KDM3A lysine (K)-specific demethylase 3A 0.0295917
GOLGA4 golgin A4 0.0295258
NCKAP1 NCK-associated protein 1 0.0289566
TMEM41B transmembrane protein 41B 0.0288883
UBE2D3 ubiquitin-conjugating enzyme E2D 3 0.0287904
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.0286448
RPS4X ribosomal protein S4, X-linked 0.0285699
TPR translocated promoter region, nuclear basket protein 0.0281866
RACK1 receptor for activated C kinase 1 0.0280099
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) 0.0276362
PLK2 polo-like kinase 2 0.0276166
FAM91A1 family with sequence similarity 91, member A1 0.0275084
KMT2E lysine (K)-specific methyltransferase 2E 0.0273876
EGLN1 egl-9 family hypoxia-inducible factor 1 0.0272028
MATR3 matrin 3 0.026973
HOOK2 hook microtubule-tethering protein 2 0.0267062
GARS1 glycyl-tRNA synthetase 1 0.0264006
USP3 ubiquitin specific peptidase 3 0.0262724
SF3B2 splicing factor 3b, subunit 2, 145kDa 0.026192
LOXL3 lysyl oxidase-like 3 0.0259238
EPRS1 glutamyl-prolyl-tRNA synthetase 1 0.0259123
HNRNPF heterogeneous nuclear ribonucleoprotein F 0.0257831
KIF13A kinesin family member 13A 0.0257665
NUP58 nucleoporin 58 0.0256242
WAC WW domain containing adaptor with coiled-coil 0.0255508
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 0.0253529
PAQR3 progestin and adipoQ receptor family member III 0.0252754
HJURP Holliday junction recognition protein 0.0252259
RIOK3 RIO kinase 3 0.0252101
GOLM2 golgi membrane protein 2 0.0251359
IPO7 importin 7 0.0250653
MEF2A myocyte enhancer factor 2A 0.0249731
SPRY4 sprouty homolog 4 (Drosophila) 0.0249396

decreased expression

Symbol Name Standardized Value
PDE4D phosphodiesterase 4D, cAMP-specific -0.165013
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.132242
PDE4B phosphodiesterase 4B, cAMP-specific -0.0982212
B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 -0.0893697
AHNAK AHNAK nucleoprotein -0.0797854
CPED1 cadherin-like and PC-esterase domain containing 1 -0.0728277
EFNA5 ephrin-A5 -0.0727382
UBC ubiquitin C -0.0710286
EGFR epidermal growth factor receptor -0.0683124
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0636192
RPS27A ribosomal protein S27a -0.0618101
ENOX1 ecto-NOX disulfide-thiol exchanger 1 -0.0615528
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.061424
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 -0.0562123
VCL vinculin -0.053826
CAMTA1 calmodulin binding transcription activator 1 -0.0473561
SLC38A2 solute carrier family 38, member 2 -0.0460797
KLF3 Kruppel-like factor 3 (basic) -0.0459467
MYOF myoferlin -0.0457194
HDAC9 histone deacetylase 9 -0.0454369
INTS6 integrator complex subunit 6 -0.045008
CACNB4 calcium channel, voltage-dependent, beta 4 subunit -0.0442237
LRPPRC leucine-rich pentatricopeptide repeat containing -0.04386
CAMKMT calmodulin-lysine N-methyltransferase -0.043357
S100A6 S100 calcium binding protein A6 -0.0426576
ITSN1 intersectin 1 (SH3 domain protein) -0.0408317
RPL9 ribosomal protein L9 -0.0402537
TBC1D22A TBC1 domain family, member 22A -0.037781
SAMD4A sterile alpha motif domain containing 4A -0.0377154
RPL23 ribosomal protein L23 -0.0369196
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) -0.0367581
TPT1 tumor protein, translationally-controlled 1 -0.0363687
SFPQ splicing factor proline/glutamine-rich -0.0348211
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0345957
ASCC3 activating signal cointegrator 1 complex subunit 3 -0.0337775
DSCAM Down syndrome cell adhesion molecule -0.0329121
LPP LIM domain containing preferred translocation partner in lipoma -0.0320866
SENP6 SUMO1/sentrin specific peptidase 6 -0.0306646
KLC1 kinesin light chain 1 -0.0300398
PRELID2 PRELI domain containing 2 -0.0297962
SMAD3 SMAD family member 3 -0.0288701
ARMH4 armadillo like helical domain containing 4 -0.0279857
GALNT5 polypeptide N-acetylgalactosaminyltransferase 5 -0.0279305
TMSB10 thymosin beta 10 -0.0277257
ASPH aspartate beta-hydroxylase -0.0274856
SLC7A1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 -0.0274104
LARS1 leucyl-tRNA synthetase 1 -0.0266641
FHIT fragile histidine triad -0.0258863
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.025604
TJP1 tight junction protein 1 -0.0254486
ZMYND8 zinc finger, MYND-type containing 8 -0.0252292
GOSR2 golgi SNAP receptor complex member 2 -0.0251169
FNIP1 folliculin interacting protein 1 -0.0248587
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0246413
NFIA nuclear factor I/A -0.0245504
RPS23 ribosomal protein S23 -0.024384
ZNF106 zinc finger protein 106 -0.0240632
TRMT11 tRNA methyltransferase 11 homolog (S. cerevisiae) -0.0239335
MLIP muscular LMNA-interacting protein -0.023851
RFC3 replication factor C (activator 1) 3, 38kDa -0.0238021
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 -0.0237354
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle -0.0237008
GLI3 GLI family zinc finger 3 -0.0236529
HS2ST1 heparan sulfate 2-O-sulfotransferase 1 -0.0236473
RBFOX2 RNA binding protein, fox-1 homolog (C. elegans) 2 -0.0235049
AMOTL2 angiomotin like 2 -0.0233254
SPTAN1 spectrin, alpha, non-erythrocytic 1 -0.0232887
PBRM1 polybromo 1 -0.0231506
GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 -0.023026
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 -0.022931
IRS1 insulin receptor substrate 1 -0.0228758
RPL18 ribosomal protein L18 -0.0228337
RPS12 ribosomal protein S12 -0.0227491
TBCA tubulin folding cofactor A -0.0226357
ANXA2 annexin A2 -0.0224462
ABCA5 ATP-binding cassette, sub-family A (ABC1), member 5 -0.022053
WSB1 WD repeat and SOCS box containing 1 -0.0217318
TMEM165 transmembrane protein 165 -0.0217271
AEBP2 AE binding protein 2 -0.0216815
CCDC138 coiled-coil domain containing 138 -0.0216462
NT5C2 5'-nucleotidase, cytosolic II -0.0214917
FNDC3A fibronectin type III domain containing 3A -0.0213014
PDE10A phosphodiesterase 10A -0.0212011
RPLP2 ribosomal protein, large, P2 -0.0211263
CFH complement factor H -0.0209677
CTTN cortactin -0.0209291
RPL12 ribosomal protein L12 -0.0209047
RRAS2 related RAS viral (r-ras) oncogene homolog 2 -0.020828
FHAD1 forkhead-associated (FHA) phosphopeptide binding domain 1 -0.0207647
PHACTR2 phosphatase and actin regulator 2 -0.020522
FN1 fibronectin 1 -0.0204215
ATXN1 ataxin 1 -0.0203485
PPM1L protein phosphatase, Mg2+/Mn2+ dependent, 1L -0.0202233
RPS21 ribosomal protein S21 -0.02017
KDM4C lysine (K)-specific demethylase 4C -0.0201477
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0200525
FGFR2 fibroblast growth factor receptor 2 -0.0200342
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 -0.0198301
AKAP9 A kinase (PRKA) anchor protein 9 -0.0196735
CTIF CBP80/20-dependent translation initiation factor -0.019633