Ranolazine_SNU-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Ranolazine perturbation in SNU-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Ranolazine_SNU-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VCL vinculin 0.127584
FLNB filamin B, beta 0.111926
ADAM10 ADAM metallopeptidase domain 10 0.104438
TXNRD1 thioredoxin reductase 1 0.100514
NBEA neurobeachin 0.0929839
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0776743
MINDY2 MINDY lysine 48 deubiquitinase 2 0.072385
SOX6 SRY (sex determining region Y)-box 6 0.0710211
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0678625
AHNAK AHNAK nucleoprotein 0.0629748
PYGB phosphorylase, glycogen; brain 0.0592782
ZEB1 zinc finger E-box binding homeobox 1 0.0587956
B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 0.0577579
CACNB4 calcium channel, voltage-dependent, beta 4 subunit 0.0556296
TMSB4X thymosin beta 4, X-linked 0.0550923
PDE4D phosphodiesterase 4D, cAMP-specific 0.0544251
TBC1D5 TBC1 domain family, member 5 0.0509177
CNOT6L CCR4-NOT transcription complex, subunit 6-like 0.0508796
ECT2 epithelial cell transforming 2 0.0507982
EGFR epidermal growth factor receptor 0.0493203
S100A6 S100 calcium binding protein A6 0.0485149
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.048238
TMEM65 transmembrane protein 65 0.0480329
PDE4B phosphodiesterase 4B, cAMP-specific 0.0469129
HDAC9 histone deacetylase 9 0.0460746
EML4 echinoderm microtubule associated protein like 4 0.0450369
RTN4 reticulon 4 0.0432224
ENOX1 ecto-NOX disulfide-thiol exchanger 1 0.0420785
TMEM41B transmembrane protein 41B 0.0382058
PICALM phosphatidylinositol binding clathrin assembly protein 0.0377496
DUSP4 dual specificity phosphatase 4 0.0375052
GARS1 glycyl-tRNA synthetase 1 0.0369792
LPP LIM domain containing preferred translocation partner in lipoma 0.0363627
EVI5 ecotropic viral integration site 5 0.0363306
ZNF292 zinc finger protein 292 0.0359919
TGFBR3 transforming growth factor, beta receptor III 0.0350798
HDLBP high density lipoprotein binding protein 0.0350032
RPLP0 ribosomal protein, large, P0 0.0347778
IBTK inhibitor of Bruton agammaglobulinemia tyrosine kinase 0.0339453
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.0337977
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0336737
TJP1 tight junction protein 1 0.0335809
PIWIL1 piwi-like RNA-mediated gene silencing 1 0.0333314
PARD3 par-3 family cell polarity regulator 0.0322434
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0319093
MATR3 matrin 3 0.031547
LOXL3 lysyl oxidase-like 3 0.0312668
GCLM glutamate-cysteine ligase, modifier subunit 0.0312416
SPATS2L spermatogenesis associated, serine-rich 2-like 0.0311487
ANKRD17 ankyrin repeat domain 17 0.0310995
RNF145 ring finger protein 145 0.0309462
CCND1 cyclin D1 0.0309049
NAP1L1 nucleosome assembly protein 1-like 1 0.0308521
ATP9B ATPase, class II, type 9B 0.0298854
PRPF38B pre-mRNA processing factor 38B 0.0298297
ROCK1 Rho-associated, coiled-coil containing protein kinase 1 0.0297616
S100A4 S100 calcium binding protein A4 0.0297056
PRELID2 PRELI domain containing 2 0.0295549
EZR ezrin 0.0292318
USP3 ubiquitin specific peptidase 3 0.0290193
PNISR PNN-interacting serine/arginine-rich protein 0.0288509
SRPK2 SRSF protein kinase 2 0.0287304
DOCK3 dedicator of cytokinesis 3 0.0283
GLI2 GLI family zinc finger 2 0.0282115
PTBP2 polypyrimidine tract binding protein 2 0.0281319
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0278839
UBE3A ubiquitin protein ligase E3A 0.0273333
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.026784
NCEH1 neutral cholesterol ester hydrolase 1 0.0267213
BRWD1 bromodomain and WD repeat domain containing 1 0.0266828
JMJD1C jumonji domain containing 1C 0.0265583
CSDE1 cold shock domain containing E1, RNA-binding 0.0264613
PUM2 pumilio RNA-binding family member 2 0.0264514
GOLGA4 golgin A4 0.0264048
TTC28 tetratricopeptide repeat domain 28 0.0262438
TMEM39A transmembrane protein 39A 0.0257326
CD47 CD47 molecule 0.0250466
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa 0.0247203
NUP58 nucleoporin 58 0.024173
SBF2 SET binding factor 2 0.0235578
SPIDR scaffolding protein involved in DNA repair 0.0235288
XKR6 XK, Kell blood group complex subunit-related family, member 6 0.0232488
CDC73 cell division cycle 73 0.0231861
SMYD3 SET and MYND domain containing 3 0.0231294
PDGFC platelet derived growth factor C 0.0230366
ADAM9 ADAM metallopeptidase domain 9 0.022893
MAP3K14 mitogen-activated protein kinase kinase kinase 14 0.0224155
RPL4 ribosomal protein L4 0.0223846
PARP4 poly (ADP-ribose) polymerase family, member 4 0.0223389
NT5C2 5'-nucleotidase, cytosolic II 0.0221915
PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 0.0220968
GPHN gephyrin 0.0220092
CAMK1D calcium/calmodulin-dependent protein kinase ID 0.0219677
EXOC6B exocyst complex component 6B 0.0219577
UTY ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 0.0218917
ACACA acetyl-CoA carboxylase alpha 0.0216819
AHCYL2 adenosylhomocysteinase-like 2 0.0211809
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 0.0211202
SREBF2 sterol regulatory element binding transcription factor 2 0.0210908
ANK2 ankyrin 2, neuronal 0.0209222

decreased expression

Symbol Name Standardized Value
RPS8 ribosomal protein S8 -0.0904491
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0797905
VIM vimentin -0.079387
PTMA prothymosin, alpha -0.0777062
RPS6 ribosomal protein S6 -0.074731
RPL31 ribosomal protein L31 -0.0745947
TMSB10 thymosin beta 10 -0.0544764
NDRG1 N-myc downstream regulated 1 -0.0514699
FTL ferritin, light polypeptide -0.0500882
RPL35A ribosomal protein L35a -0.0487961
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0480404
RPL37A ribosomal protein L37a -0.0477799
RPL9 ribosomal protein L9 -0.0462647
TPT1 tumor protein, translationally-controlled 1 -0.0450908
RPS25 ribosomal protein S25 -0.0446289
RPS3 ribosomal protein S3 -0.0425179
RPS12 ribosomal protein S12 -0.0414157
RPL7A ribosomal protein L7a -0.0403226
RPS29 ribosomal protein S29 -0.0391886
FN1 fibronectin 1 -0.0390777
RPL19 ribosomal protein L19 -0.0371917
RPS14 ribosomal protein S14 -0.0367072
RPS19 ribosomal protein S19 -0.035785
RPS10 ribosomal protein S10 -0.0354971
ASCC3 activating signal cointegrator 1 complex subunit 3 -0.0345398
EXT1 exostosin glycosyltransferase 1 -0.0344308
LOC102724023 ES1 protein homolog, mitochondrial -0.0337138
RPS13 ribosomal protein S13 -0.0335578
HLA-B major histocompatibility complex, class I, B -0.0328343
RPS27 ribosomal protein S27 -0.032683
RPL37 ribosomal protein L37 -0.0316144
ARL4C ADP-ribosylation factor-like 4C -0.0309073
INTS6 integrator complex subunit 6 -0.0301364
RPL23 ribosomal protein L23 -0.0300005
PDIA3 protein disulfide isomerase family A, member 3 -0.0295818
RPS23 ribosomal protein S23 -0.029344
RPS27A ribosomal protein S27a -0.0292248
ZSWIM6 zinc finger, SWIM-type containing 6 -0.028729
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0280568
PDE10A phosphodiesterase 10A -0.0278179
RACK1 receptor for activated C kinase 1 -0.0267853
RPL36A ribosomal protein L36a -0.0263685
RPS20 ribosomal protein S20 -0.0262196
RPLP2 ribosomal protein, large, P2 -0.0254965
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0254586
RPS16 ribosomal protein S16 -0.0252575
ASPH aspartate beta-hydroxylase -0.0250549
FTH1 ferritin, heavy polypeptide 1 -0.0249985
HM13 histocompatibility (minor) 13 -0.024654
CPED1 cadherin-like and PC-esterase domain containing 1 -0.0244488
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0243764
KTN1 kinectin 1 (kinesin receptor) -0.0239781
RAB7A RAB7A, member RAS oncogene family -0.0237519
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0236946
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.02336
RPLP1 ribosomal protein, large, P1 -0.023273
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0232042
ALCAM activated leukocyte cell adhesion molecule -0.0231064
CD44 CD44 molecule (Indian blood group) -0.0230369
AEBP2 AE binding protein 2 -0.0229074
AGO2 argonaute RISC catalytic component 2 -0.0228432
STC1 stanniocalcin 1 -0.0227606
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0227109
RPS2 ribosomal protein S2 -0.0227049
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0226588
ITGA10 integrin, alpha 10 -0.0226175
IGFBP3 insulin-like growth factor binding protein 3 -0.0225632
AKAP12 A kinase (PRKA) anchor protein 12 -0.0225307
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 -0.0224875
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 -0.022342
PSD3 pleckstrin and Sec7 domain containing 3 -0.0222927
IGF2 insulin-like growth factor 2 -0.0221886
VEGFA vascular endothelial growth factor A -0.0219112
RPS15 ribosomal protein S15 -0.0218668
BMP10 bone morphogenetic protein 10 -0.021668
PEAK1 pseudopodium-enriched atypical kinase 1 -0.0216197
MED13L mediator complex subunit 13-like -0.0213223
MTDH metadherin -0.0212943
IFITM3 interferon induced transmembrane protein 3 -0.0210753
POTEF POTE ankyrin domain family, member F -0.0210327
S100A9 S100 calcium binding protein A9 -0.0206188
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0203929
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0202719
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0201213
RPL38 ribosomal protein L38 -0.0200254
COX4I1 cytochrome c oxidase subunit IV isoform 1 -0.0200067
FBXO11 F-box protein 11 -0.0199886
RPL15 ribosomal protein L15 -0.0197819
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0197001
DENND4A DENN/MADD domain containing 4A -0.0196159
LMO7 LIM domain 7 -0.0193627
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0188514
EEF1D eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) -0.0186802
AREG amphiregulin -0.0185862
ATG7 autophagy related 7 -0.0184618
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0183756
PPDPF pancreatic progenitor cell differentiation and proliferation factor -0.0183506
RPS17 ribosomal protein S17 -0.0182422
RPL36 ribosomal protein L36 -0.0182337
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0181289