Rapamycin_A-427 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Rapamycin perturbation in A-427 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Rapamycin_A-427 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
SFPQ splicing factor proline/glutamine-rich 0.0463634
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0444737
RPS3 ribosomal protein S3 0.0435351
ZSWIM6 zinc finger, SWIM-type containing 6 0.0433085
CELF2 CUGBP, Elav-like family member 2 0.0398702
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.039575
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0387214
EEF2 eukaryotic translation elongation factor 2 0.038492
PCBP2 poly(rC) binding protein 2 0.0365818
MARCHF4 membrane associated ring-CH-type finger 4 0.0347123
PPP6R3 protein phosphatase 6, regulatory subunit 3 0.0337096
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0334544
CMIP c-Maf inducing protein 0.0331381
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.033078
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0322827
NCEH1 neutral cholesterol ester hydrolase 1 0.03212
MED13L mediator complex subunit 13-like 0.0320329
EDN1 endothelin 1 0.0318087
YBX3 Y box binding protein 3 0.0298265
CCNL1 cyclin L1 0.0297115
INTS6 integrator complex subunit 6 0.0296868
FXR1 fragile X mental retardation, autosomal homolog 1 0.0293572
CALR calreticulin 0.0288549
EXOC6B exocyst complex component 6B 0.0282613
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.0276465
TMCC1 transmembrane and coiled-coil domain family 1 0.0274735
GSK3B glycogen synthase kinase 3 beta 0.0271486
ZBTB20 zinc finger and BTB domain containing 20 0.0257077
CCDC88A coiled-coil domain containing 88A 0.0255301
CALD1 caldesmon 1 0.0251214
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0244879
KMT2C lysine (K)-specific methyltransferase 2C 0.0238378
SPAG9 sperm associated antigen 9 0.0234751
NFIB nuclear factor I/B 0.0234297
DPYD dihydropyrimidine dehydrogenase 0.0232761
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0231865
NEGR1 neuronal growth regulator 1 0.0229254
RPL21 ribosomal protein L21 0.0228909
ERBIN erbb2 interacting protein 0.02274
PLK2 polo-like kinase 2 0.0224087
DENND5A DENN/MADD domain containing 5A 0.022303
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0218602
AKAP9 A kinase (PRKA) anchor protein 9 0.0210067
PRRC2C proline-rich coiled-coil 2C 0.0209824
ARID4B AT rich interactive domain 4B (RBP1-like) 0.0208921
PICALM phosphatidylinositol binding clathrin assembly protein 0.0207125
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.0202034
FBXL20 F-box and leucine-rich repeat protein 20 0.0200271
CLPTM1L CLPTM1-like 0.0198833
NEK7 NIMA-related kinase 7 0.0198663
FLNA filamin A, alpha 0.0198331
OXR1 oxidation resistance 1 0.0197366
KTN1 kinectin 1 (kinesin receptor) 0.0196218
NRXN3 neurexin 3 0.0194706
KDM6A lysine (K)-specific demethylase 6A 0.0187905
RB1CC1 RB1-inducible coiled-coil 1 0.0187351
KDM5A lysine (K)-specific demethylase 5A 0.0184959
RPS12 ribosomal protein S12 0.0184659
MYL12B myosin, light chain 12B, regulatory 0.0182476
BCAS3 breast carcinoma amplified sequence 3 0.0182453
PCM1 pericentriolar material 1 0.0179512
RPL9 ribosomal protein L9 0.0173333
RAPGEF6 Rap guanine nucleotide exchange factor (GEF) 6 0.0172713
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0170741
DIAPH1 diaphanous-related formin 1 0.0169986
LPP LIM domain containing preferred translocation partner in lipoma 0.0168887
SYT1 synaptotagmin I 0.0165796
NSUN6 NOP2/Sun domain family, member 6 0.0165394
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 0.0165169
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 0.0164339
DST dystonin 0.0163638
RFX3 regulatory factor X, 3 (influences HLA class II expression) 0.0163259
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.0163212
GPBP1 GC-rich promoter binding protein 1 0.0160013
NIPBL Nipped-B homolog (Drosophila) 0.0156848
CARD16 caspase recruitment domain family, member 16 0.0156181
ANKRD17 ankyrin repeat domain 17 0.0156089
GABARAPL1 GABA(A) receptor-associated protein like 1 0.0155796
RPL13A ribosomal protein L13a 0.0155531
KMT2D lysine (K)-specific methyltransferase 2D 0.0154379
CEP70 centrosomal protein 70kDa 0.0153801
DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha) 0.0153714
SON SON DNA binding protein 0.0153704
RPL26 ribosomal protein L26 0.0152618
CEP192 centrosomal protein 192kDa 0.0152219
ZFAND3 zinc finger, AN1-type domain 3 0.0151806
CRISPLD1 cysteine-rich secretory protein LCCL domain containing 1 0.0151708
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.015091
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0149112
AKT3 v-akt murine thymoma viral oncogene homolog 3 0.0148892
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.014851
TOP1 topoisomerase (DNA) I 0.0147906
FRYL FRY-like 0.0147431
ARHGAP12 Rho GTPase activating protein 12 0.0146685
CAMK2D calcium/calmodulin-dependent protein kinase II delta 0.0145723
BRWD1 bromodomain and WD repeat domain containing 1 0.0144571
PTMS parathymosin 0.0144548
CAMSAP2 calmodulin regulated spectrin-associated protein family, member 2 0.0144049
POU2F1 POU class 2 homeobox 1 0.0143837
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.014041

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.378537
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0999594
MMP12 matrix metallopeptidase 12 -0.0938169
ALDH1A1 aldehyde dehydrogenase 1 family, member A1 -0.0843073
AREG amphiregulin -0.0826298
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0787129
ACTG1 actin gamma 1 -0.0779393
ASPH aspartate beta-hydroxylase -0.0713219
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.070063
NHSL1 NHS-like 1 -0.066089
LRRTM4 leucine rich repeat transmembrane neuronal 4 -0.0645486
CUBN cubilin (intrinsic factor-cobalamin receptor) -0.06288
ERRFI1 ERBB receptor feedback inhibitor 1 -0.061341
RPL35A ribosomal protein L35a -0.0604182
MKI67 marker of proliferation Ki-67 -0.0603774
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0600653
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0577046
BCHE butyrylcholinesterase -0.0572802
AHNAK AHNAK nucleoprotein -0.0570833
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0558007
NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa -0.0555241
SLC38A1 solute carrier family 38, member 1 -0.0541094
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0518477
H1-0 H1.0 linker histone -0.051776
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 -0.0506825
VIM vimentin -0.0495614
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0493107
TAS2R14 taste receptor, type 2, member 14 -0.0452041
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0444844
VMP1 vacuole membrane protein 1 -0.0413518
TPM4 tropomyosin 4 -0.0396207
LDHB lactate dehydrogenase B -0.039579
KPNB1 karyopherin (importin) beta 1 -0.0394598
ACTR2 ARP2 actin-related protein 2 homolog (yeast) -0.0389584
TMEM123 transmembrane protein 123 -0.0389489
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.038648
FTL ferritin, light polypeptide -0.0379631
ANXA1 annexin A1 -0.0377178
TUBB tubulin, beta class I -0.0374872
PCDH7 protocadherin 7 -0.0368024
XPO1 exportin 1 -0.0367439
S100A10 S100 calcium binding protein A10 -0.0361201
MTAP methylthioadenosine phosphorylase -0.03538
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0352969
ENO1 enolase 1, (alpha) -0.0351544
IPO7 importin 7 -0.0349184
EIF1 eukaryotic translation initiation factor 1 -0.0343719
CCND1 cyclin D1 -0.0343273
PCDH9 protocadherin 9 -0.0342009
ZNF804A zinc finger protein 804A -0.0340509
RPLP1 ribosomal protein, large, P1 -0.0339706
CANX calnexin -0.0331957
PRKDC protein kinase, DNA-activated, catalytic polypeptide -0.033034
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0322397
IFIH1 interferon induced with helicase C domain 1 -0.0322174
HSPA9 heat shock 70kDa protein 9 (mortalin) -0.0304096
RPL38 ribosomal protein L38 -0.0300103
ATP5F1B ATP synthase F1 subunit beta -0.0295291
RPL19 ribosomal protein L19 -0.0295242
SQSTM1 sequestosome 1 -0.0288911
ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains) -0.0285757
EDARADD EDAR-associated death domain -0.0285078
H3-3B H3.3 histone B -0.0280923
SPATS2 spermatogenesis associated, serine-rich 2 -0.0279153
S100A6 S100 calcium binding protein A6 -0.0279084
RPL8 ribosomal protein L8 -0.027842
TUBA1B tubulin, alpha 1b -0.0276801
TPI1 triosephosphate isomerase 1 -0.0272121
PDE4D phosphodiesterase 4D, cAMP-specific -0.026534
RPS29 ribosomal protein S29 -0.0263534
ADGRG6 adhesion G protein-coupled receptor G6 -0.026329
NAV3 neuron navigator 3 -0.0262729
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa -0.0262616
RPS6 ribosomal protein S6 -0.0259841
BRI3BP BRI3 binding protein -0.0257054
HSPB1 heat shock 27kDa protein 1 -0.0254848
RAB1A RAB1A, member RAS oncogene family -0.0252654
WDR45B WD repeat domain 45B -0.0252251
MAP1B microtubule-associated protein 1B -0.0249982
TM4SF1 transmembrane 4 L six family member 1 -0.0247722
WNK1 WNK lysine deficient protein kinase 1 -0.0247598
BIRC2 baculoviral IAP repeat containing 2 -0.0246849
PTMA prothymosin, alpha -0.0244085
RPS21 ribosomal protein S21 -0.024297
YAP1 Yes-associated protein 1 -0.0242275
PRR11 proline rich 11 -0.0240051
YEATS2 YEATS domain containing 2 -0.0237969
KCMF1 potassium channel modulatory factor 1 -0.0237597
PDIA3 protein disulfide isomerase family A, member 3 -0.0235174
CCT8 chaperonin containing TCP1, subunit 8 (theta) -0.0233018
NLGN1 neuroligin 1 -0.02304
RPS16 ribosomal protein S16 -0.0230307
EHBP1 EH domain binding protein 1 -0.0230249
RPS13 ribosomal protein S13 -0.0227762
DLGAP1 discs, large (Drosophila) homolog-associated protein 1 -0.0226807
LOC112694756 uncharaterized LOC112694756 -0.0226102
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -0.022065
CDK17 cyclin-dependent kinase 17 -0.0217339
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0217302
NFE2L2 nuclear factor, erythroid 2-like 2 -0.0216253