Rapamycin_HepG2/C3A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Rapamycin perturbation in HepG2/C3A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Rapamycin_HepG2/C3A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.276494
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.174867
FN1 fibronectin 1 0.155779
SPTBN1 spectrin, beta, non-erythrocytic 1 0.123604
EEF2 eukaryotic translation elongation factor 2 0.0946166
ENO1 enolase 1, (alpha) 0.0918387
TRIO trio Rho guanine nucleotide exchange factor 0.0844602
ATXN1 ataxin 1 0.0822053
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0787005
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.075517
FNDC3B fibronectin type III domain containing 3B 0.0733185
ZMYND8 zinc finger, MYND-type containing 8 0.0732153
SLC38A2 solute carrier family 38, member 2 0.0729261
ASPH aspartate beta-hydroxylase 0.0667397
PEG3 paternally expressed 3 0.0662916
FMNL2 formin-like 2 0.0659507
PTTG1IP pituitary tumor-transforming 1 interacting protein 0.0658084
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.065738
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0643775
SORL1 sortilin-related receptor, L(DLR class) A repeats containing 0.0636413
MAML2 mastermind-like 2 (Drosophila) 0.0626144
SAMD4A sterile alpha motif domain containing 4A 0.0611796
TNS1 tensin 1 0.0611086
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0594168
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0576081
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0571504
ELL2 elongation factor, RNA polymerase II, 2 0.0570936
RUNX1 runt-related transcription factor 1 0.0550435
ACSL4 acyl-CoA synthetase long-chain family member 4 0.0548977
VPS54 vacuolar protein sorting 54 homolog (S. cerevisiae) 0.0547798
EHBP1 EH domain binding protein 1 0.054771
TM4SF1 transmembrane 4 L six family member 1 0.0534331
FTH1 ferritin, heavy polypeptide 1 0.0529697
NEDD9 neural precursor cell expressed, developmentally down-regulated 9 0.0523826
FRMD5 FERM domain containing 5 0.0520534
MBNL2 muscleblind-like splicing regulator 2 0.0506173
CTSB cathepsin B 0.0495445
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 0.0485172
TPT1 tumor protein, translationally-controlled 1 0.0479148
PLIN2 perilipin 2 0.0467653
TPM4 tropomyosin 4 0.0465973
IGF1R insulin-like growth factor 1 receptor 0.0464178
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.045362
DOCK4 dedicator of cytokinesis 4 0.0427132
GMDS GDP-mannose 4,6-dehydratase 0.0424404
ARHGAP21 Rho GTPase activating protein 21 0.042296
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0422223
SESTD1 SEC14 and spectrin domains 1 0.0419117
HOOK2 hook microtubule-tethering protein 2 0.0411693
TXNRD1 thioredoxin reductase 1 0.0410027
TMEM123 transmembrane protein 123 0.0404195
MSI2 musashi RNA-binding protein 2 0.0404077
EPAS1 endothelial PAS domain protein 1 0.0401343
APOA2 apolipoprotein A-II 0.0399143
CP ceruloplasmin (ferroxidase) 0.0398168
OSBPL10 oxysterol binding protein-like 10 0.0381524
ESYT2 extended synaptotagmin-like protein 2 0.0381437
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 0.0377479
GK glycerol kinase 0.0377007
AGO2 argonaute RISC catalytic component 2 0.0376701
DSPP dentin sialophosphoprotein 0.0373773
KDM3A lysine (K)-specific demethylase 3A 0.0368454
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0366696
SLC38A1 solute carrier family 38, member 1 0.0359881
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0359503
RAI14 retinoic acid induced 14 0.035828
WWTR1 WW domain containing transcription regulator 1 0.0353371
AFF1 AF4/FMR2 family, member 1 0.0352208
PTPRF protein tyrosine phosphatase, receptor type, F 0.0343617
NPAS2 neuronal PAS domain protein 2 0.0335343
EXT1 exostosin glycosyltransferase 1 0.0331272
ARFGEF3 ARFGEF family member 3 0.0329434
PDIA3 protein disulfide isomerase family A, member 3 0.0327597
ATP10A ATPase, class V, type 10A 0.0326899
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0321969
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0318822
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0317763
STAU1 staufen double-stranded RNA binding protein 1 0.0314789
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0314656
RPL35A ribosomal protein L35a 0.0312308
TBC1D22A TBC1 domain family, member 22A 0.0310585
MARCKS myristoylated alanine-rich protein kinase C substrate 0.0307155
DLC1 DLC1 Rho GTPase activating protein 0.0303802
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0299275
IGFBP3 insulin-like growth factor binding protein 3 0.0298907
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.0294773
STK17A serine/threonine kinase 17a 0.0293854
PLEC plectin 0.0291841
TNS3 tensin 3 0.0291502
PTK2 protein tyrosine kinase 2 0.0288983
FAM13A family with sequence similarity 13, member A 0.0286894
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0285664
MBNL1 muscleblind-like splicing regulator 1 0.0284845
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0279983
FTL ferritin, light polypeptide 0.0279583
GLG1 golgi glycoprotein 1 0.0279069
PGK1 phosphoglycerate kinase 1 0.0278707
SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 0.0277804
NDRG1 N-myc downstream regulated 1 0.0277535
IRF2BP2 interferon regulatory factor 2 binding protein 2 0.027753

decreased expression

Symbol Name Standardized Value
APOB apolipoprotein B -0.179562
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 -0.130528
MT2A metallothionein 2A -0.112357
C3 complement component 3 -0.102445
RPS12 ribosomal protein S12 -0.0889182
IGF2 insulin-like growth factor 2 -0.0719006
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0607845
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0603008
IGFBP1 insulin-like growth factor binding protein 1 -0.0549118
DHRS2 dehydrogenase/reductase (SDR family) member 2 -0.0514259
RPL37A ribosomal protein L37a -0.0500827
RPS2 ribosomal protein S2 -0.050025
TRIM26 tripartite motif containing 26 -0.0484265
RPL11 ribosomal protein L11 -0.0483224
MRTFA myocardin related transcription factor A -0.0468772
BCL2L1 BCL2-like 1 -0.0459288
RBM39 RNA binding motif protein 39 -0.0457408
RPL9 ribosomal protein L9 -0.0452104
EIF5B eukaryotic translation initiation factor 5B -0.0374128
RIGI RNA sensor RIG-I -0.0364629
B2M beta-2-microglobulin -0.0354277
RPL26 ribosomal protein L26 -0.0350372
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0345754
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0338581
ABCA5 ATP-binding cassette, sub-family A (ABC1), member 5 -0.0326603
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0325892
PTMA prothymosin, alpha -0.0316522
CFB complement factor B -0.0316096
MED13L mediator complex subunit 13-like -0.0303546
SET SET nuclear proto-oncogene -0.0303381
ACTR3 ARP3 actin-related protein 3 homolog (yeast) -0.0293123
UBXN4 UBX domain protein 4 -0.029036
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0290295
IFNGR1 interferon gamma receptor 1 -0.027643
ISG15 ISG15 ubiquitin-like modifier -0.0275841
PAPOLA poly(A) polymerase alpha -0.0273879
TNFSF14 tumor necrosis factor (ligand) superfamily, member 14 -0.0272003
CUL3 cullin 3 -0.0269929
BCLAF1 BCL2-associated transcription factor 1 -0.0267361
TMSB10 thymosin beta 10 -0.0267101
FGA fibrinogen alpha chain -0.0266542
MBNL3 muscleblind-like splicing regulator 3 -0.0262628
A2M alpha-2-macroglobulin -0.0259823
MNAT1 MNAT CDK-activating kinase assembly factor 1 -0.0251655
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) -0.0243945
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 -0.0242435
NRIP1 nuclear receptor interacting protein 1 -0.0241933
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.024076
LRRTM4 leucine rich repeat transmembrane neuronal 4 -0.0239652
RBM33 RNA binding motif protein 33 -0.02375
KTN1 kinectin 1 (kinesin receptor) -0.0233531
LUC7L3 LUC7-like 3 (S. cerevisiae) -0.02305
SBNO1 strawberry notch homolog 1 (Drosophila) -0.0230249
IFI6 interferon, alpha-inducible protein 6 -0.0229413
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0227495
NAP1L1 nucleosome assembly protein 1-like 1 -0.0227331
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0223461
NCKAP1 NCK-associated protein 1 -0.0223385
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0221782
LCN2 lipocalin 2 -0.0220737
RPL17-C18ORF32 RPL17-C18orf32 readthrough -0.0219199
SP100 SP100 nuclear antigen -0.0216841
WDR43 WD repeat domain 43 -0.0216626
PNPT1 polyribonucleotide nucleotidyltransferase 1 -0.0212214
VCL vinculin -0.0210372
IL6ST interleukin 6 signal transducer -0.0206949
FXR1 fragile X mental retardation, autosomal homolog 1 -0.0206279
CPE carboxypeptidase E -0.0203081
NEMF nuclear export mediator factor -0.0203077
NACA nascent polypeptide-associated complex alpha subunit -0.0202957
RPS17 ribosomal protein S17 -0.0202322
IFIH1 interferon induced with helicase C domain 1 -0.0202032
RPL7 ribosomal protein L7 -0.0201878
CCNL1 cyclin L1 -0.0200107
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0199965
RPS3 ribosomal protein S3 -0.0198497
GPAM glycerol-3-phosphate acyltransferase, mitochondrial -0.0198049
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0196582
PEG10 paternally expressed 10 -0.0194238
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 -0.0193146
MACF1 microtubule-actin crosslinking factor 1 -0.0192388
RPL21 ribosomal protein L21 -0.0192135
MAPK8 mitogen-activated protein kinase 8 -0.019146
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0189431
ZC3H15 zinc finger CCCH-type containing 15 -0.0187742
ITIH2 inter-alpha-trypsin inhibitor heavy chain 2 -0.0186137
BBX bobby sox homolog (Drosophila) -0.0184689
JAK1 Janus kinase 1 -0.018393
H3-3B H3.3 histone B -0.0182689
RPL38 ribosomal protein L38 -0.018267
TRIM25 tripartite motif containing 25 -0.0182331
RPS5 ribosomal protein S5 -0.0180243
EIF3L eukaryotic translation initiation factor 3, subunit L -0.0179951
RPL36 ribosomal protein L36 -0.0176736
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 -0.0176298
RPL10A ribosomal protein L10a -0.017606
RPS25 ribosomal protein S25 -0.0176012
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0175723
ALPK2 alpha-kinase 2 -0.0175241
FBXO31 F-box protein 31 -0.0174111