Rapamycin_NCI-H2030 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Rapamycin perturbation in NCI-H2030 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Rapamycin_NCI-H2030 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GRAMD1B GRAM domain containing 1B 0.17987
PM20D1 peptidase M20 domain containing 1 0.146212
PDE4D phosphodiesterase 4D, cAMP-specific 0.107264
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.106174
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0932719
DOCK4 dedicator of cytokinesis 4 0.0818056
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0774261
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0729851
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.0709998
TXNRD1 thioredoxin reductase 1 0.0701813
FTH1 ferritin, heavy polypeptide 1 0.0694308
SAMD4A sterile alpha motif domain containing 4A 0.06403
FAM107B family with sequence similarity 107, member B 0.0616267
UBASH3B ubiquitin associated and SH3 domain containing B 0.0607763
CFLAR CASP8 and FADD-like apoptosis regulator 0.0602629
DOCK5 dedicator of cytokinesis 5 0.0601231
MACF1 microtubule-actin crosslinking factor 1 0.0600627
KYNU kynureninase 0.0594816
CXCL8 chemokine (C-X-C motif) ligand 8 0.0588914
SVIL supervillin 0.0580355
ZFAND3 zinc finger, AN1-type domain 3 0.056184
GLIS3 GLIS family zinc finger 3 0.0549773
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0525913
EGFR epidermal growth factor receptor 0.052195
EEF2 eukaryotic translation elongation factor 2 0.0509827
MCL1 myeloid cell leukemia 1 0.0505528
BICC1 BicC family RNA binding protein 1 0.0479963
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0479358
SMOC1 SPARC related modular calcium binding 1 0.0464387
NRG1 neuregulin 1 0.0448535
TRIO trio Rho guanine nucleotide exchange factor 0.0437578
SOD2 superoxide dismutase 2, mitochondrial 0.0432764
USP34 ubiquitin specific peptidase 34 0.042439
ARID1B AT rich interactive domain 1B (SWI1-like) 0.0422582
PDLIM5 PDZ and LIM domain 5 0.041318
PMEPA1 prostate transmembrane protein, androgen induced 1 0.0412784
AGO2 argonaute RISC catalytic component 2 0.0410358
ZSWIM6 zinc finger, SWIM-type containing 6 0.0397032
EIF1 eukaryotic translation initiation factor 1 0.0390006
MRTFA myocardin related transcription factor A 0.0387858
LPP LIM domain containing preferred translocation partner in lipoma 0.0383916
MYOF myoferlin 0.0379705
SMAD2 SMAD family member 2 0.0376187
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 0.0374506
RAB31 RAB31, member RAS oncogene family 0.037289
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0365775
NTN4 netrin 4 0.0362224
DSCAM Down syndrome cell adhesion molecule 0.0357716
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0339838
FMNL2 formin-like 2 0.0339232
CMIP c-Maf inducing protein 0.0337592
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0337013
ZNF638 zinc finger protein 638 0.0335933
PTK2 protein tyrosine kinase 2 0.0335345
ATXN1 ataxin 1 0.0332994
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0332023
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0330965
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0329913
RICTOR RPTOR independent companion of MTOR, complex 2 0.0327579
THSD4 thrombospondin, type I, domain containing 4 0.0324521
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0321663
DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila) 0.0316835
ELL2 elongation factor, RNA polymerase II, 2 0.0309812
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0306747
SLC38A2 solute carrier family 38, member 2 0.030396
PHLDB2 pleckstrin homology-like domain, family B, member 2 0.030325
AHR aryl hydrocarbon receptor 0.0302252
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0301395
BMP6 bone morphogenetic protein 6 0.0297183
FLNA filamin A, alpha 0.0287063
RHOA ras homolog family member A 0.0283083
COPA coatomer protein complex, subunit alpha 0.0281867
FNDC3B fibronectin type III domain containing 3B 0.0278151
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0277802
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0277625
WDR59 WD repeat domain 59 0.0269573
RPL35A ribosomal protein L35a 0.0268961
RALGAPA1 Ral GTPase activating protein, alpha subunit 1 (catalytic) 0.0266676
TNFAIP8 tumor necrosis factor, alpha-induced protein 8 0.0266052
MYH9 myosin, heavy chain 9, non-muscle 0.0265938
SPIRE1 spire-type actin nucleation factor 1 0.0263861
WWTR1 WW domain containing transcription regulator 1 0.0260932
HLA-E major histocompatibility complex, class I, E 0.0259621
ERRFI1 ERBB receptor feedback inhibitor 1 0.0259132
BRD2 bromodomain containing 2 0.0259073
TPD52 tumor protein D52 0.0258834
RAB10 RAB10, member RAS oncogene family 0.0256878
EXOC6B exocyst complex component 6B 0.0254532
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0251383
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.0249585
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0248389
INTS6 integrator complex subunit 6 0.0247435
SPAG9 sperm associated antigen 9 0.0246957
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 0.0246582
CCNY cyclin Y 0.0244896
SMAD3 SMAD family member 3 0.0244592
RPTOR regulatory associated protein of MTOR, complex 1 0.024444
SQSTM1 sequestosome 1 0.0243146
NFE2L2 nuclear factor, erythroid 2-like 2 0.0243069
SIK3 SIK family kinase 3 0.0240944

decreased expression

Symbol Name Standardized Value
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.152798
VIM vimentin -0.131989
TMSB10 thymosin beta 10 -0.12199
MT2A metallothionein 2A -0.121433
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0854152
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.081553
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0644092
BASP1 brain abundant, membrane attached signal protein 1 -0.0562348
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0435326
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0395363
RPL23 ribosomal protein L23 -0.0380285
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0330244
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0316919
EFNA5 ephrin-A5 -0.0312174
IGFBP4 insulin-like growth factor binding protein 4 -0.0302372
MAP1B microtubule-associated protein 1B -0.028045
TM4SF1 transmembrane 4 L six family member 1 -0.0272801
PYGL phosphorylase, glycogen, liver -0.0271056
FLNB filamin B, beta -0.0269741
RPL36AL ribosomal protein L36a-like -0.0266407
TPI1 triosephosphate isomerase 1 -0.0265099
TPM3 tropomyosin 3 -0.0262497
EHBP1 EH domain binding protein 1 -0.0261018
ZMYND8 zinc finger, MYND-type containing 8 -0.0257642
HMGA1 high mobility group AT-hook 1 -0.02552
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0248021
NQO1 NAD(P)H dehydrogenase, quinone 1 -0.0244347
TPM4 tropomyosin 4 -0.0236605
PFN1 profilin 1 -0.0236524
IGFBP3 insulin-like growth factor binding protein 3 -0.0233189
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0228962
SOX4 SRY (sex determining region Y)-box 4 -0.0227633
KIF5B kinesin family member 5B -0.0222758
S100A6 S100 calcium binding protein A6 -0.0218626
NHSL1 NHS-like 1 -0.0217019
KLF6 Kruppel-like factor 6 -0.021597
GNAS GNAS complex locus -0.0212566
SMC4 structural maintenance of chromosomes 4 -0.0211953
RPL18 ribosomal protein L18 -0.0204827
SEL1L sel-1 suppressor of lin-12-like (C. elegans) -0.0204808
ARHGAP12 Rho GTPase activating protein 12 -0.0203184
AKAP12 A kinase (PRKA) anchor protein 12 -0.0202017
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) -0.0201068
COTL1 coactosin-like F-actin binding protein 1 -0.0198312
RPS12 ribosomal protein S12 -0.0197297
MYL12B myosin, light chain 12B, regulatory -0.0195552
EGR1 early growth response 1 -0.019252
RPS27 ribosomal protein S27 -0.0190097
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0187142
CNRIP1 cannabinoid receptor interacting protein 1 -0.0186075
STC1 stanniocalcin 1 -0.0183674
RPS3 ribosomal protein S3 -0.0182114
NAP1L1 nucleosome assembly protein 1-like 1 -0.0180933
AHNAK AHNAK nucleoprotein -0.0179548
RPL36 ribosomal protein L36 -0.0178958
AK1 adenylate kinase 1 -0.0178785
GTPBP4 GTP binding protein 4 -0.0176611
FOS FBJ murine osteosarcoma viral oncogene homolog -0.0175494
GPC6 glypican 6 -0.0175255
FTL ferritin, light polypeptide -0.017502
CBX3 chromobox homolog 3 -0.0174537
MIS18BP1 MIS18 binding protein 1 -0.017452
ANKRD12 ankyrin repeat domain 12 -0.0173969
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0172192
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0171462
EIF5B eukaryotic translation initiation factor 5B -0.0170223
RAI1 retinoic acid induced 1 -0.0169519
ASPH aspartate beta-hydroxylase -0.0169255
PPIG peptidylprolyl isomerase G (cyclophilin G) -0.0169189
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0163603
CALR calreticulin -0.0163159
ARF4 ADP-ribosylation factor 4 -0.0162794
DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha) -0.0162277
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.016081
EIF3A eukaryotic translation initiation factor 3, subunit A -0.0160765
KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 -0.0160741
ARHGAP24 Rho GTPase activating protein 24 -0.0159093
TPT1 tumor protein, translationally-controlled 1 -0.0158281
NDRG1 N-myc downstream regulated 1 -0.0155519
ATP5F1E ATP synthase F1 subunit epsilon -0.0154005
RPS19 ribosomal protein S19 -0.0152581
RPLP0 ribosomal protein, large, P0 -0.0151797
IWS1 IWS1 homolog (S. cerevisiae) -0.0151118
GOLGA4 golgin A4 -0.0151097
IGFBP1 insulin-like growth factor binding protein 1 -0.0150157
H1-0 H1.0 linker histone -0.0149857
EIF4A1 eukaryotic translation initiation factor 4A1 -0.0149527
SERBP1 SERPINE1 mRNA binding protein 1 -0.0148272
TCEA1 transcription elongation factor A (SII), 1 -0.0147931
LMNA lamin A/C -0.0147904
ACTG1 actin gamma 1 -0.0146611
ALCAM activated leukocyte cell adhesion molecule -0.0146538
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 -0.0145633
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0144456
NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 -0.0143111
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0142669
TAGLN2 transgelin 2 -0.0142634
CHD1 chromodomain helicase DNA binding protein 1 -0.0142563
KTN1 kinectin 1 (kinesin receptor) -0.0141727
LAMB1 laminin, beta 1 -0.0141587