Rapamycin_NCI-H2122 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Rapamycin perturbation in NCI-H2122 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Rapamycin_NCI-H2122 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
LAMB3 laminin, beta 3 0.179878
PDE4D phosphodiesterase 4D, cAMP-specific 0.157962
SAMD4A sterile alpha motif domain containing 4A 0.148707
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.143908
BACE2 beta-site APP-cleaving enzyme 2 0.113827
ATP2C2 ATPase, Ca++ transporting, type 2C, member 2 0.11239
LAMC2 laminin, gamma 2 0.0812357
LAMA4 laminin, alpha 4 0.0792319
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0699752
GRB10 growth factor receptor-bound protein 10 0.0691556
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0649045
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa 0.0624745
DOCK5 dedicator of cytokinesis 5 0.0613478
ANTXR2 anthrax toxin receptor 2 0.0613075
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0594827
CEMIP cell migration inducing protein, hyaluronan binding 0.0577452
SVIL supervillin 0.0567886
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0558628
STC1 stanniocalcin 1 0.0552499
EXT1 exostosin glycosyltransferase 1 0.0550638
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0518586
AFDN afadin, adherens junction formation factor 0.0508756
FTH1 ferritin, heavy polypeptide 1 0.0508606
RBM39 RNA binding motif protein 39 0.0504101
DSCAM Down syndrome cell adhesion molecule 0.0499634
HELZ helicase with zinc finger 0.0493445
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0485071
XPO1 exportin 1 0.0484468
SHB Src homology 2 domain containing adaptor protein B 0.0475673
KDM7A lysine (K)-specific demethylase 7A 0.0474607
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0473216
MUC16 mucin 16, cell surface associated 0.0464985
RAB7A RAB7A, member RAS oncogene family 0.0456259
LMO7 LIM domain 7 0.045514
PHLDB2 pleckstrin homology-like domain, family B, member 2 0.0448834
RPS12 ribosomal protein S12 0.0442881
NIBAN2 niban apoptosis regulator 2 0.0440141
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0438802
TAS2R14 taste receptor, type 2, member 14 0.0434083
MCL1 myeloid cell leukemia 1 0.0425431
RASA2 RAS p21 protein activator 2 0.0424898
RICTOR RPTOR independent companion of MTOR, complex 2 0.0416257
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0415572
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0409034
EGFR epidermal growth factor receptor 0.0407087
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0402494
KDM5B lysine (K)-specific demethylase 5B 0.0394249
ANKRD11 ankyrin repeat domain 11 0.0391042
JMJD1C jumonji domain containing 1C 0.0387175
TBC1D22A TBC1 domain family, member 22A 0.0385766
SON SON DNA binding protein 0.0384322
SFPQ splicing factor proline/glutamine-rich 0.03838
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 0.0374133
ATOSA atos homolog A 0.0372373
BAIAP2L1 BAI1-associated protein 2-like 1 0.0370181
PDPK1 3-phosphoinositide dependent protein kinase 1 0.036915
SKIL SKI-like proto-oncogene 0.0368327
IRS2 insulin receptor substrate 2 0.0362355
MAP3K5 mitogen-activated protein kinase kinase kinase 5 0.0354507
ARID3B AT rich interactive domain 3B (BRIGHT-like) 0.035314
PDE10A phosphodiesterase 10A 0.0348481
SUMF1 sulfatase modifying factor 1 0.0344805
RBM47 RNA binding motif protein 47 0.0339675
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0334799
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) 0.0333779
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0331624
KLF6 Kruppel-like factor 6 0.0330227
GSK3B glycogen synthase kinase 3 beta 0.032951
MCTP1 multiple C2 domains, transmembrane 1 0.0327715
MED15 mediator complex subunit 15 0.0326844
GIGYF2 GRB10 interacting GYF protein 2 0.0325148
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 0.0320178
FNIP1 folliculin interacting protein 1 0.0318883
FRMD4A FERM domain containing 4A 0.0308642
FER fer (fps/fes related) tyrosine kinase 0.030753
FAM13A family with sequence similarity 13, member A 0.030717
ABHD17C abhydrolase domain containing 17C 0.030704
ARHGAP32 Rho GTPase activating protein 32 0.0306109
PRKN parkin RBR E3 ubiquitin protein ligase 0.0305578
SMYD3 SET and MYND domain containing 3 0.030555
DGKD diacylglycerol kinase, delta 130kDa 0.0303847
AFF4 AF4/FMR2 family, member 4 0.0301709
SPIDR scaffolding protein involved in DNA repair 0.0300948
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 0.0298213
USP34 ubiquitin specific peptidase 34 0.0296216
DOCK1 dedicator of cytokinesis 1 0.0295974
FMNL2 formin-like 2 0.0294343
TULP4 tubby like protein 4 0.0293916
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0293829
DYNC2I1 dynein 2 intermediate chain 1 0.0292651
NKD1 naked cuticle homolog 1 (Drosophila) 0.0291373
ANKRD17 ankyrin repeat domain 17 0.0290991
CUX1 cut-like homeobox 1 0.0290655
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 0.0288409
CCNY cyclin Y 0.0285358
PHIP pleckstrin homology domain interacting protein 0.0284456
AHNAK2 AHNAK nucleoprotein 2 0.0282312
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0280741
PTPRM protein tyrosine phosphatase, receptor type, M 0.0276938
ETNK1 ethanolamine kinase 1 0.0276149

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.130722
PTMA prothymosin, alpha -0.118986
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) -0.084446
B2M beta-2-microglobulin -0.0772028
PGK1 phosphoglycerate kinase 1 -0.0682993
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0673436
RPS8 ribosomal protein S8 -0.0628738
IER3 immediate early response 3 -0.0617446
UBC ubiquitin C -0.0595161
RPL19 ribosomal protein L19 -0.055492
TMSB10 thymosin beta 10 -0.0554887
PSD3 pleckstrin and Sec7 domain containing 3 -0.0540854
TPT1 tumor protein, translationally-controlled 1 -0.053732
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.053064
CANX calnexin -0.0529484
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 -0.0522098
RPL26 ribosomal protein L26 -0.0521821
LDHA lactate dehydrogenase A -0.0511762
IGF2 insulin-like growth factor 2 -0.0491106
ENO1 enolase 1, (alpha) -0.0484102
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0471412
FTL ferritin, light polypeptide -0.0467006
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0464315
ANKHD1 ankyrin repeat and KH domain containing 1 -0.0448875
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -0.0443386
MSI2 musashi RNA-binding protein 2 -0.0440444
RPLP1 ribosomal protein, large, P1 -0.0438876
GULP1 GULP, engulfment adaptor PTB domain containing 1 -0.0438202
HLA-B major histocompatibility complex, class I, B -0.0437928
KMT2E lysine (K)-specific methyltransferase 2E -0.0426976
BPTF bromodomain PHD finger transcription factor -0.0409336
HMGB1 high mobility group box 1 -0.0407713
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0397922
TNRC6B trinucleotide repeat containing 6B -0.039669
WSB1 WD repeat and SOCS box containing 1 -0.0390261
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0388409
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0371336
MT2A metallothionein 2A -0.0370743
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0369312
CALR calreticulin -0.0366024
CDK6 cyclin-dependent kinase 6 -0.0365046
MAST4 microtubule associated serine/threonine kinase family member 4 -0.036186
ARB2A ARB2 cotranscriptional regulator A -0.0360246
TNIP1 TNFAIP3 interacting protein 1 -0.0358146
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0350422
RPS11 ribosomal protein S11 -0.0350069
SQSTM1 sequestosome 1 -0.0342066
KPNB1 karyopherin (importin) beta 1 -0.0340011
ETS2 v-ets avian erythroblastosis virus E26 oncogene homolog 2 -0.0337386
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0333622
NAP1L1 nucleosome assembly protein 1-like 1 -0.0331356
RPLP2 ribosomal protein, large, P2 -0.03309
CEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) -0.0327908
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0326371
STX8 syntaxin 8 -0.0317607
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0317046
SF3B1 splicing factor 3b, subunit 1, 155kDa -0.0316364
RPS25 ribosomal protein S25 -0.0314946
FAT1 FAT atypical cadherin 1 -0.030922
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0305326
TAOK1 TAO kinase 1 -0.0302546
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0302529
FAM107B family with sequence similarity 107, member B -0.0301514
PKP4 plakophilin 4 -0.0298349
RSAD2 radical S-adenosyl methionine domain containing 2 -0.029345
ASPH aspartate beta-hydroxylase -0.0293237
RBM25 RNA binding motif protein 25 -0.0292698
UPF3B UPF3 regulator of nonsense transcripts homolog B (yeast) -0.0291236
MED13L mediator complex subunit 13-like -0.0288783
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0287982
PERP PERP, TP53 apoptosis effector -0.028596
AUTS2 autism susceptibility candidate 2 -0.0285419
IFI6 interferon, alpha-inducible protein 6 -0.0284457
ISG15 ISG15 ubiquitin-like modifier -0.0283363
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.028257
SFTPA2 surfactant protein A2 -0.0282388
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0278212
WASF2 WAS protein family, member 2 -0.0278148
CTBP2 C-terminal binding protein 2 -0.0277965
KTN1 kinectin 1 (kinesin receptor) -0.0274014
MUC13 mucin 13, cell surface associated -0.0273865
RPL38 ribosomal protein L38 -0.0273594
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) -0.0272694
H3-3B H3.3 histone B -0.0272483
PLEKHA5 pleckstrin homology domain containing, family A member 5 -0.0272078
SYT1 synaptotagmin I -0.0268821
FHL2 four and a half LIM domains 2 -0.0267692
BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB -0.0267336
CD2AP CD2-associated protein -0.0266533
ANGPTL4 angiopoietin-like 4 -0.0263333
AKR1C1 aldo-keto reductase family 1, member C1 -0.0262305
RPL37A ribosomal protein L37a -0.0261432
EIF2S3 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa -0.0260255
CDK13 cyclin-dependent kinase 13 -0.0260185
RPS27 ribosomal protein S27 -0.0259026
RPL11 ribosomal protein L11 -0.0258714
TPX2 TPX2, microtubule-associated -0.0256536
UBE2D2 ubiquitin-conjugating enzyme E2D 2 -0.0252856
ATP8B1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 -0.0252072
GPBP1 GC-rich promoter binding protein 1 -0.024947