Rapamycin_NCI-H2347 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Rapamycin perturbation in NCI-H2347 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Rapamycin_NCI-H2347 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FTH1 ferritin, heavy polypeptide 1 0.113036
VEGFA vascular endothelial growth factor A 0.105048
IGFBP3 insulin-like growth factor binding protein 3 0.101387
PLEC plectin 0.0998607
GRB10 growth factor receptor-bound protein 10 0.0958473
TSC22D2 TSC22 domain family, member 2 0.0883287
FN1 fibronectin 1 0.0837443
FNDC3B fibronectin type III domain containing 3B 0.0682611
MYH9 myosin, heavy chain 9, non-muscle 0.06722
EEF2 eukaryotic translation elongation factor 2 0.066034
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0590695
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0575128
MSN moesin 0.0544962
NDRG1 N-myc downstream regulated 1 0.0519978
FAM13A family with sequence similarity 13, member A 0.0515796
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0486713
PPARD peroxisome proliferator-activated receptor delta 0.0481062
LAMB3 laminin, beta 3 0.0456286
DSPP dentin sialophosphoprotein 0.0449571
NAV2 neuron navigator 2 0.0418874
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0417169
DTNA dystrobrevin, alpha 0.039775
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0372712
RPS6 ribosomal protein S6 0.0364258
EIF3H eukaryotic translation initiation factor 3, subunit H 0.0363461
HSPA8 heat shock 70kDa protein 8 0.0354759
MICAL3 microtubule associated monooxygenase, calponin and LIM domain containing 3 0.0352344
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0352202
CCNL1 cyclin L1 0.0335525
RNF145 ring finger protein 145 0.0324128
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.0323592
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0321381
KMT2E lysine (K)-specific methyltransferase 2E 0.0319181
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0316295
DUSP10 dual specificity phosphatase 10 0.0308697
COPA coatomer protein complex, subunit alpha 0.0287247
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0283583
RAB7A RAB7A, member RAS oncogene family 0.0282134
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0276763
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0264605
ANKRD11 ankyrin repeat domain 11 0.026421
RPL3 ribosomal protein L3 0.0263859
KDM6A lysine (K)-specific demethylase 6A 0.0259527
SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B 0.0258791
SAMD4A sterile alpha motif domain containing 4A 0.0256663
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0253423
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0252859
RPL29 ribosomal protein L29 0.025045
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0248204
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.0247437
SEC23A Sec23 homolog A (S. cerevisiae) 0.0242814
EEF1G eukaryotic translation elongation factor 1 gamma 0.0240937
FOSL1 FOS-like antigen 1 0.0240856
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0234273
IRF6 interferon regulatory factor 6 0.0230996
HOOK2 hook microtubule-tethering protein 2 0.0228365
EIF4B eukaryotic translation initiation factor 4B 0.0228095
MSI2 musashi RNA-binding protein 2 0.0228016
EZR ezrin 0.0227854
FLNA filamin A, alpha 0.0225772
HYOU1 hypoxia up-regulated 1 0.0223826
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0223781
MEF2A myocyte enhancer factor 2A 0.0218077
RNASE3 ribonuclease, RNase A family, 3 0.0216539
UBA6 ubiquitin-like modifier activating enzyme 6 0.0215692
AHDC1 AT hook, DNA binding motif, containing 1 0.0214613
PDLIM5 PDZ and LIM domain 5 0.0212091
ITCH itchy E3 ubiquitin protein ligase 0.0208163
AKAP13 A kinase (PRKA) anchor protein 13 0.0207894
MYO10 myosin X 0.0207184
PTK2 protein tyrosine kinase 2 0.020695
ST14 suppression of tumorigenicity 14 (colon carcinoma) 0.0206681
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0206629
MKRN1 makorin ring finger protein 1 0.0205287
TPM3 tropomyosin 3 0.0201041
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0200383
RPL13A ribosomal protein L13a 0.0199432
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0199344
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0198834
RBM39 RNA binding motif protein 39 0.0198156
MAP1B microtubule-associated protein 1B 0.0194471
FLNC filamin C, gamma 0.0194454
AFF4 AF4/FMR2 family, member 4 0.0193823
HELZ helicase with zinc finger 0.0191181
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0189347
PPP1R13B protein phosphatase 1, regulatory subunit 13B 0.0188549
KDM2A lysine (K)-specific demethylase 2A 0.0187514
ATP11B ATPase, class VI, type 11B 0.0187507
MEF2D myocyte enhancer factor 2D 0.0186887
JUP junction plakoglobin 0.018569
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 0.0185209
MATR3 matrin 3 0.0184888
SRPK2 SRSF protein kinase 2 0.0184822
RPS20 ribosomal protein S20 0.0182917
UPP1 uridine phosphorylase 1 0.0182044
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0181565
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0180654
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.017871
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0176558
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 0.0175305

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.24576
UBC ubiquitin C -0.222217
TMSB10 thymosin beta 10 -0.209483
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.162207
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.14551
S100A6 S100 calcium binding protein A6 -0.143627
ASPH aspartate beta-hydroxylase -0.139057
PTMA prothymosin, alpha -0.123308
TPT1 tumor protein, translationally-controlled 1 -0.102112
ENO1 enolase 1, (alpha) -0.0923246
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0876735
IFI6 interferon, alpha-inducible protein 6 -0.0870663
ACTG1 actin gamma 1 -0.0816483
TM4SF1 transmembrane 4 L six family member 1 -0.0716337
IFI27 interferon, alpha-inducible protein 27 -0.0691366
RPS27A ribosomal protein S27a -0.0673096
ALCAM activated leukocyte cell adhesion molecule -0.0671879
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0669551
LMO7 LIM domain 7 -0.0668444
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.065947
IFI16 interferon, gamma-inducible protein 16 -0.0641365
AHNAK AHNAK nucleoprotein -0.0624393
EPCAM epithelial cell adhesion molecule -0.0580326
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0567829
TOP2A topoisomerase (DNA) II alpha 170kDa -0.055889
S100A10 S100 calcium binding protein A10 -0.0550281
MT2A metallothionein 2A -0.0549534
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0545996
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0514612
ZFP36L1 ZFP36 ring finger protein-like 1 -0.050761
RPL34 ribosomal protein L34 -0.0502155
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0488728
SDC4 syndecan 4 -0.0475598
WSB1 WD repeat and SOCS box containing 1 -0.0455433
SOX4 SRY (sex determining region Y)-box 4 -0.045527
HMGB2 high mobility group box 2 -0.0445048
CD2AP CD2-associated protein -0.0435017
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 -0.0411327
TMSB4X thymosin beta 4, X-linked -0.0402326
LPP LIM domain containing preferred translocation partner in lipoma -0.0400351
VCL vinculin -0.0387727
TMEM263 transmembrane protein 263 -0.0384433
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0382918
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0382571
RPS3 ribosomal protein S3 -0.0381332
NAP1L1 nucleosome assembly protein 1-like 1 -0.0380134
CCNI cyclin I -0.0374673
FTL ferritin, light polypeptide -0.0373984
TXNIP thioredoxin interacting protein -0.0372845
BZW1 basic leucine zipper and W2 domains 1 -0.0371692
IFITM3 interferon induced transmembrane protein 3 -0.0361516
RPL23 ribosomal protein L23 -0.0355896
IFIH1 interferon induced with helicase C domain 1 -0.0354188
RPS24 ribosomal protein S24 -0.0351943
RPL9 ribosomal protein L9 -0.0346256
TACSTD2 tumor-associated calcium signal transducer 2 -0.0346079
RACK1 receptor for activated C kinase 1 -0.0345599
DSCAM Down syndrome cell adhesion molecule -0.0340672
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -0.0340424
CCND1 cyclin D1 -0.0335101
RAD21 RAD21 homolog (S. pombe) -0.0328947
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0326832
HLA-B major histocompatibility complex, class I, B -0.0320171
RPS8 ribosomal protein S8 -0.031024
SP100 SP100 nuclear antigen -0.0305937
ETV6 ets variant 6 -0.0305515
LOC112694756 uncharaterized LOC112694756 -0.030548
SQSTM1 sequestosome 1 -0.0305339
OSMR oncostatin M receptor -0.0304647
NPEPPS aminopeptidase puromycin sensitive -0.0301293
ARHGAP5 Rho GTPase activating protein 5 -0.030096
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.030082
CD9 CD9 molecule -0.0297002
PLSCR1 phospholipid scramblase 1 -0.0296385
CALU calumenin -0.0296078
KRT7 keratin 7, type II -0.0295323
LDHA lactate dehydrogenase A -0.0288175
MX2 MX dynamin-like GTPase 2 -0.028785
DUSP6 dual specificity phosphatase 6 -0.0286853
HLA-E major histocompatibility complex, class I, E -0.0286654
EXT1 exostosin glycosyltransferase 1 -0.0286091
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0285893
IFITM1 interferon induced transmembrane protein 1 -0.0284639
NPC2 Niemann-Pick disease, type C2 -0.0284189
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0281013
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0280396
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0274937
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0273377
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.027142
KDM3A lysine (K)-specific demethylase 3A -0.0265253
KLF6 Kruppel-like factor 6 -0.0263327
PDIA4 protein disulfide isomerase family A, member 4 -0.0260115
SACK1A scaffolding CK1 anchoring protein A -0.0258379
CD63 CD63 molecule -0.0252368
MX1 MX dynamin-like GTPase 1 -0.0252218
C15ORF48 chromosome 15 open reading frame 48 -0.024959
ISG15 ISG15 ubiquitin-like modifier -0.0248477
RPL32 ribosomal protein L32 -0.0245703
TPI1 triosephosphate isomerase 1 -0.0244268
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0241973