Rapamycin_NCI-H596 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Rapamycin perturbation in NCI-H596 cell line (Tahoe Therapeutics)
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Genes

175 genes differentially expressed following the Rapamycin_NCI-H596 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
SLTM SAFB-like, transcription modulator 0.149348
ELL2 elongation factor, RNA polymerase II, 2 0.138284
EXT1 exostosin glycosyltransferase 1 0.134238
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.120113
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.118961
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.114069
EGFR epidermal growth factor receptor 0.102461
TPT1 tumor protein, translationally-controlled 1 0.101179
LMO7 LIM domain 7 0.0994716
PBX3 pre-B-cell leukemia homeobox 3 0.093945
JMJD1C jumonji domain containing 1C 0.090823
JARID2 jumonji, AT rich interactive domain 2 0.0885388
FTH1 ferritin, heavy polypeptide 1 0.0880811
PTPRM protein tyrosine phosphatase, receptor type, M 0.0827285
AKAP12 A kinase (PRKA) anchor protein 12 0.0820069
DSCAM Down syndrome cell adhesion molecule 0.0783451
USP34 ubiquitin specific peptidase 34 0.0779281
MT2A metallothionein 2A 0.0756756
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0746179
BASP1 brain abundant, membrane attached signal protein 1 0.0721529
AKAP13 A kinase (PRKA) anchor protein 13 0.0658803
COL5A2 collagen, type V, alpha 2 0.0654455
TRIO trio Rho guanine nucleotide exchange factor 0.0612421
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0570894
NDRG1 N-myc downstream regulated 1 0.0566337
CEP350 centrosomal protein 350kDa 0.0559573
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0548082
GOLGA4 golgin A4 0.0543591
RPLP1 ribosomal protein, large, P1 0.0539354
LIMCH1 LIM and calponin homology domains 1 0.0520846
DOCK5 dedicator of cytokinesis 5 0.0503988
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0492515
FMNL2 formin-like 2 0.0482356
ERC2 ELKS/RAB6-interacting/CAST family member 2 0.0458717
NAV2 neuron navigator 2 0.0443486
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.043801
FER fer (fps/fes related) tyrosine kinase 0.042351
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0416395
MACF1 microtubule-actin crosslinking factor 1 0.0415418
VMP1 vacuole membrane protein 1 0.0408227
MYO10 myosin X 0.0354021
HLA-A major histocompatibility complex, class I, A 0.0339339
FNDC3B fibronectin type III domain containing 3B 0.0336485
IGFBP3 insulin-like growth factor binding protein 3 0.0326102
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0319549
PM20D1 peptidase M20 domain containing 1 0.0314044
PTK2 protein tyrosine kinase 2 0.0291204
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0288469
KMT2C lysine (K)-specific methyltransferase 2C 0.0283323
RICTOR RPTOR independent companion of MTOR, complex 2 0.0268795
WDFY3 WD repeat and FYVE domain containing 3 0.026799
EFNA5 ephrin-A5 0.0249562
DOCK4 dedicator of cytokinesis 4 0.0245764
INHBA inhibin, beta A 0.0242498
RPL35A ribosomal protein L35a 0.0233191
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0218935
CUX1 cut-like homeobox 1 0.0214584
ENO1 enolase 1, (alpha) 0.0211809
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0211552
MAP3K2 mitogen-activated protein kinase kinase kinase 2 0.020506
RAB7A RAB7A, member RAS oncogene family 0.0195262
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0193118
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0172333
OSMR oncostatin M receptor 0.0169079
ASPH aspartate beta-hydroxylase 0.0165218
PDE10A phosphodiesterase 10A 0.0164582
BMERB1 bMERB domain containing 1 0.0161913
UTRN utrophin 0.0147624
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0141068
TXNRD1 thioredoxin reductase 1 0.0136392
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.0132536
TCF12 transcription factor 12 0.0127015
HMGA2 high mobility group AT-hook 2 0.0126355
SLC2A13 solute carrier family 2 (facilitated glucose transporter), member 13 0.0105097
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.00977519
RPL37A ribosomal protein L37a 0.00936664
COL6A1 collagen, type VI, alpha 1 0.00894411
NCOA3 nuclear receptor coactivator 3 0.00841167
BBX bobby sox homolog (Drosophila) 0.00828715
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.00807329
AOPEP aminopeptidase O (putative) 0.00794573
LPP LIM domain containing preferred translocation partner in lipoma 0.00774932
ZNF292 zinc finger protein 292 0.00659841
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.00631496
SAMD4A sterile alpha motif domain containing 4A 0.00604089
ZFAND3 zinc finger, AN1-type domain 3 0.00422107
SBF2 SET binding factor 2 0.00327262
PICALM phosphatidylinositol binding clathrin assembly protein 0.00283306
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 0.00215526
MYOF myoferlin 0.00189065
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.00187206
RPL31 ribosomal protein L31 4.27952E-4

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.374663
FN1 fibronectin 1 -0.183411
UBC ubiquitin C -0.165358
VIM vimentin -0.132672
PTMA prothymosin, alpha -0.114022
PDE4D phosphodiesterase 4D, cAMP-specific -0.110487
DST dystonin -0.108172
PSD3 pleckstrin and Sec7 domain containing 3 -0.106276
RTN4 reticulon 4 -0.0934083
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 -0.0914178
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.081822
LDHA lactate dehydrogenase A -0.0801489
TMSB10 thymosin beta 10 -0.0729878
GPHN gephyrin -0.0713941
LIMS1 LIM and senescent cell antigen-like domains 1 -0.0706803
NUP58 nucleoporin 58 -0.0681165
PGK1 phosphoglycerate kinase 1 -0.0680978
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0663238
SETD5 SET domain containing 5 -0.0657607
PDE3A phosphodiesterase 3A, cGMP-inhibited -0.0647304
ZBTB20 zinc finger and BTB domain containing 20 -0.0632594
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0618041
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0601598
DPP10 dipeptidyl-peptidase 10 (non-functional) -0.0595645
RPS27A ribosomal protein S27a -0.0588639
TIMP3 TIMP metallopeptidase inhibitor 3 -0.0557383
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.05345
MYH9 myosin, heavy chain 9, non-muscle -0.0505006
EEF2 eukaryotic translation elongation factor 2 -0.0496292
CCNI cyclin I -0.048923
PKM pyruvate kinase, muscle -0.0487279
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0479154
ADAM10 ADAM metallopeptidase domain 10 -0.0469421
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.046867
ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 -0.0420494
WAC WW domain containing adaptor with coiled-coil -0.0392055
WSB1 WD repeat and SOCS box containing 1 -0.0388783
PARD3 par-3 family cell polarity regulator -0.037935
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type -0.0373596
GPC6 glypican 6 -0.0367202
MAML3 mastermind-like 3 (Drosophila) -0.0358608
RPS6 ribosomal protein S6 -0.0347666
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0342276
ACTN4 actinin, alpha 4 -0.0333017
SRPK2 SRSF protein kinase 2 -0.0320931
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit -0.0314884
RLF rearranged L-myc fusion -0.0311562
NAP1L1 nucleosome assembly protein 1-like 1 -0.0307622
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) -0.0307367
KMT2E lysine (K)-specific methyltransferase 2E -0.0291673
ARID1B AT rich interactive domain 1B (SWI1-like) -0.0286264
RPL23 ribosomal protein L23 -0.0285359
SMYD3 SET and MYND domain containing 3 -0.0255582
RPS3 ribosomal protein S3 -0.0246951
NAMPT nicotinamide phosphoribosyltransferase -0.0242344
COL6A3 collagen, type VI, alpha 3 -0.0231526
DLG1 discs, large homolog 1 (Drosophila) -0.022057
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0212491
ACTG1 actin gamma 1 -0.0206606
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0202602
SPIDR scaffolding protein involved in DNA repair -0.0188068
ANXA2 annexin A2 -0.0166088
TMTC2 transmembrane and tetratricopeptide repeat containing 2 -0.0152365
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0136027
MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase -0.0135525
MED13L mediator complex subunit 13-like -0.0130774
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -0.0115482
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 -0.0114425
THSD4 thrombospondin, type I, domain containing 4 -0.0107553
PDLIM5 PDZ and LIM domain 5 -0.00977837
MED13 mediator complex subunit 13 -0.00829304
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.00821266
CD44 CD44 molecule (Indian blood group) -0.00799988
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.00783145
AKAP9 A kinase (PRKA) anchor protein 9 -0.00712709
NALF1 NALCN channel auxiliary factor 1 -0.0042778
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.00341222
RERE arginine-glutamic acid dipeptide (RE) repeats -0.00329204
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.00280417
CDH13 cadherin 13 -0.00255566
ESYT2 extended synaptotagmin-like protein 2 -0.00190915
NKD1 naked cuticle homolog 1 (Drosophila) -0.00164871
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -3.1102E-4