Regorafenib_MIA PaCa-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Regorafenib perturbation in MIA PaCa-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Regorafenib_MIA PaCa-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PTMA prothymosin, alpha 0.154317
DST dystonin 0.107272
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0643696
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0583837
EFNA5 ephrin-A5 0.0565516
YEATS2 YEATS domain containing 2 0.0542135
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0492696
SFPQ splicing factor proline/glutamine-rich 0.0478239
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0458473
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0450975
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0439156
PRELID2 PRELI domain containing 2 0.0430644
TSC22D1 TSC22 domain family, member 1 0.042229
FMNL2 formin-like 2 0.0421173
IFI6 interferon, alpha-inducible protein 6 0.0416537
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0407655
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein 0.040305
RAD51B RAD51 paralog B 0.0400967
PTPRF protein tyrosine phosphatase, receptor type, F 0.0398815
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0390805
ANKRD11 ankyrin repeat domain 11 0.0389406
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0386843
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 0.0383382
PTK2 protein tyrosine kinase 2 0.037723
OGA O-GlcNAcase 0.0374568
CENPF centromere protein F, 350/400kDa 0.0362576
SQSTM1 sequestosome 1 0.0356632
LDHA lactate dehydrogenase A 0.0342823
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 0.0335821
FOXJ3 forkhead box J3 0.0332534
ZNF292 zinc finger protein 292 0.0319038
PKM pyruvate kinase, muscle 0.0318976
WSB1 WD repeat and SOCS box containing 1 0.0312031
EXOC4 exocyst complex component 4 0.0306617
SET SET nuclear proto-oncogene 0.0305014
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 0.0304904
SMYD3 SET and MYND domain containing 3 0.0300865
TNS3 tensin 3 0.0298983
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0298724
ANKRD36 ankyrin repeat domain 36 0.0297572
FLNB filamin B, beta 0.0291278
KMT2C lysine (K)-specific methyltransferase 2C 0.0289823
PLEKHA4 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 0.0287465
HLA-B major histocompatibility complex, class I, B 0.0287086
ENO1 enolase 1, (alpha) 0.0284562
ZNF148 zinc finger protein 148 0.0284103
CCNL1 cyclin L1 0.028382
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0283137
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0282284
RBM39 RNA binding motif protein 39 0.0279985
FUBP1 far upstream element (FUSE) binding protein 1 0.0278447
PRRC2C proline-rich coiled-coil 2C 0.0270077
TRIO trio Rho guanine nucleotide exchange factor 0.0268522
B2M beta-2-microglobulin 0.0265455
TRA2B transformer 2 beta homolog (Drosophila) 0.0265264
MYO10 myosin X 0.0264048
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 0.0261185
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0260551
RNF213 ring finger protein 213 0.0257611
DENND1A DENN/MADD domain containing 1A 0.0254223
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0252797
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.0251445
PDIA6 protein disulfide isomerase family A, member 6 0.0251135
VEGFA vascular endothelial growth factor A 0.0251095
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0245811
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0241592
TTC28 tetratricopeptide repeat domain 28 0.0237663
TPRG1 tumor protein p63 regulated 1 0.0236843
ASPH aspartate beta-hydroxylase 0.0236582
GIGYF2 GRB10 interacting GYF protein 2 0.0235174
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.0233621
ADAM10 ADAM metallopeptidase domain 10 0.0232831
SYNE2 spectrin repeat containing, nuclear envelope 2 0.023108
SLC38A2 solute carrier family 38, member 2 0.0230317
SDK1 sidekick cell adhesion molecule 1 0.0230248
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.0230033
TBC1D22A TBC1 domain family, member 22A 0.0227966
DLG1 discs, large homolog 1 (Drosophila) 0.0226688
RERE arginine-glutamic acid dipeptide (RE) repeats 0.022589
PIAS2 protein inhibitor of activated STAT, 2 0.0225665
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0223985
RPL35A ribosomal protein L35a 0.0223296
RPL3 ribosomal protein L3 0.0222932
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 0.0222891
MIMS1 mitochondrial inner membrane scaffold 1 0.0222792
KDM3A lysine (K)-specific demethylase 3A 0.0222522
MYH9 myosin, heavy chain 9, non-muscle 0.0222055
ITGB4 integrin, beta 4 0.0218843
CDK19 cyclin-dependent kinase 19 0.0218132
MTR 5-methyltetrahydrofolate-homocysteine methyltransferase 0.0217859
ECPAS Ecm29 proteasome adaptor and scaffold 0.0216352
ARHGAP12 Rho GTPase activating protein 12 0.0216119
NDRG1 N-myc downstream regulated 1 0.0216025
GNGT1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 0.0215969
BCAR3 breast cancer anti-estrogen resistance 3 0.0215967
TPR translocated promoter region, nuclear basket protein 0.0215755
KDM4B lysine (K)-specific demethylase 4B 0.0214705
DOCK11 dedicator of cytokinesis 11 0.021379
IFITM1 interferon induced transmembrane protein 1 0.0212903
RPS27A ribosomal protein S27a 0.0211635

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.281646
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.166729
LOC112694756 uncharaterized LOC112694756 -0.128212
TXNRD1 thioredoxin reductase 1 -0.116414
TM4SF1 transmembrane 4 L six family member 1 -0.114811
ERRFI1 ERBB receptor feedback inhibitor 1 -0.114416
VIM vimentin -0.104463
TMSB10 thymosin beta 10 -0.0897127
WWTR1 WW domain containing transcription regulator 1 -0.0756854
AHNAK AHNAK nucleoprotein -0.0732353
PSD3 pleckstrin and Sec7 domain containing 3 -0.068798
MT2A metallothionein 2A -0.067465
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0647257
TMSB4X thymosin beta 4, X-linked -0.0603681
ARHGAP5 Rho GTPase activating protein 5 -0.0603225
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0598996
FTH1 ferritin, heavy polypeptide 1 -0.0512305
HMGA1 high mobility group AT-hook 1 -0.0503327
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0497102
TMEM41B transmembrane protein 41B -0.0474458
CANX calnexin -0.0471203
MT1X metallothionein 1X -0.0466701
BIRC3 baculoviral IAP repeat containing 3 -0.046136
RAP2B RAP2B, member of RAS oncogene family -0.046063
JUN jun proto-oncogene -0.0457279
UBC ubiquitin C -0.0455558
EREG epiregulin -0.0447034
POTEF POTE ankyrin domain family, member F -0.0444441
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0439813
TSC22D2 TSC22 domain family, member 2 -0.0424032
ZBTB38 zinc finger and BTB domain containing 38 -0.0423017
CAPN2 calpain 2, (m/II) large subunit -0.0409031
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0408297
ACTG1 actin gamma 1 -0.0405512
ZEB1 zinc finger E-box binding homeobox 1 -0.0404796
RPL12 ribosomal protein L12 -0.0401493
HDLBP high density lipoprotein binding protein -0.039919
TPT1 tumor protein, translationally-controlled 1 -0.039867
CD44 CD44 molecule (Indian blood group) -0.0398316
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.039721
TP63 tumor protein p63 -0.0390477
FBXO11 F-box protein 11 -0.0382409
KTN1 kinectin 1 (kinesin receptor) -0.0373344
KPNA4 karyopherin alpha 4 (importin alpha 3) -0.037223
TRIP12 thyroid hormone receptor interactor 12 -0.0355963
CFLAR CASP8 and FADD-like apoptosis regulator -0.0344996
MT1E metallothionein 1E -0.0334795
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0331502
RAB27B RAB27B, member RAS oncogene family -0.0327489
PYGB phosphorylase, glycogen; brain -0.0324207
RUNX1 runt-related transcription factor 1 -0.0323733
AFF4 AF4/FMR2 family, member 4 -0.0323575
JMJD1C jumonji domain containing 1C -0.0323191
RPLP0 ribosomal protein, large, P0 -0.03058
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 -0.0304757
RPL28 ribosomal protein L28 -0.0304199
EGR1 early growth response 1 -0.0295453
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0292613
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0291314
S100A6 S100 calcium binding protein A6 -0.0279892
TUBB tubulin, beta class I -0.0276568
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.027605
SEPTIN7 septin 7 -0.0273028
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0264788
TAOK1 TAO kinase 1 -0.0263989
RPL4 ribosomal protein L4 -0.0263979
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0257872
EIF4A1 eukaryotic translation initiation factor 4A1 -0.0257086
GAN gigaxonin -0.0256196
EIF1 eukaryotic translation initiation factor 1 -0.0255016
RAB7A RAB7A, member RAS oncogene family -0.0253559
IPO7 importin 7 -0.025346
RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 -0.025313
NFE2L2 nuclear factor, erythroid 2-like 2 -0.0252823
SGMS2 sphingomyelin synthase 2 -0.025064
RPL35 ribosomal protein L35 -0.0250514
MCTP1 multiple C2 domains, transmembrane 1 -0.0246896
BICD1 bicaudal D homolog 1 (Drosophila) -0.0246878
ARF1 ADP-ribosylation factor 1 -0.0246403
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0244397
RPS8 ribosomal protein S8 -0.0241264
BHLHE40 basic helix-loop-helix family, member e40 -0.0238631
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0238107
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0237304
ERBIN erbb2 interacting protein -0.023704
TAPBP TAP binding protein (tapasin) -0.0236196
CDCP1 CUB domain containing protein 1 -0.0230585
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0228315
CLTC clathrin, heavy chain (Hc) -0.0224601
RPL17-C18ORF32 RPL17-C18orf32 readthrough -0.022203
GPAT3 glycerol-3-phosphate acyltransferase 3 -0.0220406
NT5E 5'-nucleotidase, ecto (CD73) -0.0214449
PTBP3 polypyrimidine tract binding protein 3 -0.0212893
SEC24A SEC24 family member A -0.0209512
TPI1 triosephosphate isomerase 1 -0.0207921
PTP4A2 protein tyrosine phosphatase type IVA, member 2 -0.0207606
WARS1 tryptophanyl-tRNA synthetase 1 -0.0207387
RASA2 RAS p21 protein activator 2 -0.0206123
USP12 ubiquitin specific peptidase 12 -0.0204048
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 -0.0203273