Regorafenib_SW 1088 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Regorafenib perturbation in SW 1088 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Regorafenib_SW 1088 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HYCC1 hyccin PI4KA lipid kinase complex subunit 1 0.167635
COL6A3 collagen, type VI, alpha 3 0.1132
CXCL8 chemokine (C-X-C motif) ligand 8 0.110557
FTH1 ferritin, heavy polypeptide 1 0.0979021
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0824245
TENT5A terminal nucleotidyltransferase 5A 0.0822289
SPAG9 sperm associated antigen 9 0.0685898
RAB1A RAB1A, member RAS oncogene family 0.0660569
COL1A2 collagen, type I, alpha 2 0.0647585
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0633309
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0628986
COPA coatomer protein complex, subunit alpha 0.0614196
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0576107
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0574925
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0573603
TIMP3 TIMP metallopeptidase inhibitor 3 0.0564877
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0547331
LOX lysyl oxidase 0.0520826
CDH13 cadherin 13 0.0515535
SDC4 syndecan 4 0.0508422
FN1 fibronectin 1 0.0508418
ECE1 endothelin converting enzyme 1 0.0507447
ENO1 enolase 1, (alpha) 0.0500315
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0486151
IL6 interleukin 6 0.0483711
PDIA6 protein disulfide isomerase family A, member 6 0.0480128
COL7A1 collagen, type VII, alpha 1 0.0476767
KDM6A lysine (K)-specific demethylase 6A 0.0476286
PGK1 phosphoglycerate kinase 1 0.0474584
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 0.0449856
HILPDA hypoxia inducible lipid droplet-associated 0.0441446
PCBP2 poly(rC) binding protein 2 0.0439148
HMGA2 high mobility group AT-hook 2 0.0436114
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.0430163
TTC3 tetratricopeptide repeat domain 3 0.0427718
HIP1 huntingtin interacting protein 1 0.0420689
NRXN3 neurexin 3 0.0418474
IKBIP IKBKB interacting protein 0.0418233
HELZ helicase with zinc finger 0.0406855
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 0.0393638
YME1L1 YME1-like 1 ATPase 0.038988
RAB6A RAB6A, member RAS oncogene family 0.0389774
MIMS1 mitochondrial inner membrane scaffold 1 0.0384912
EMP1 epithelial membrane protein 1 0.038408
TPR translocated promoter region, nuclear basket protein 0.038265
DPY19L1 dpy-19-like 1 (C. elegans) 0.037757
ARID1A AT rich interactive domain 1A (SWI-like) 0.0375403
RICTOR RPTOR independent companion of MTOR, complex 2 0.0374679
PRKD3 protein kinase D3 0.037459
PLAUR plasminogen activator, urokinase receptor 0.0371467
RBM39 RNA binding motif protein 39 0.0366252
CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 0.0359919
NPEPPS aminopeptidase puromycin sensitive 0.0353179
CYLD cylindromatosis (turban tumor syndrome) 0.0344954
SRP54 signal recognition particle 54kDa 0.033986
ROCK1 Rho-associated, coiled-coil containing protein kinase 1 0.0338322
USP34 ubiquitin specific peptidase 34 0.0337853
RAD23B RAD23 homolog B (S. cerevisiae) 0.0337592
ERBIN erbb2 interacting protein 0.0337235
FLOT1 flotillin 1 0.0336497
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 0.0333277
STC1 stanniocalcin 1 0.0332858
RHEB Ras homolog enriched in brain 0.0329235
DDIT4 DNA-damage-inducible transcript 4 0.0328406
RLF rearranged L-myc fusion 0.0326583
VEGFA vascular endothelial growth factor A 0.0325413
TENT2 terminal nucleotidyltransferase 2 0.0325112
TM4SF1 transmembrane 4 L six family member 1 0.032016
PDPK1 3-phosphoinositide dependent protein kinase 1 0.0318404
HLA-A major histocompatibility complex, class I, A 0.0318178
PDIA3 protein disulfide isomerase family A, member 3 0.0317347
ATP13A3 ATPase type 13A3 0.0311746
FNBP4 formin binding protein 4 0.0311544
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 0.030947
RSRC2 arginine/serine-rich coiled-coil 2 0.0306941
HERC1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 0.0303105
EFNA5 ephrin-A5 0.0302692
CAPN2 calpain 2, (m/II) large subunit 0.0300743
KTN1 kinectin 1 (kinesin receptor) 0.0300728
USP3 ubiquitin specific peptidase 3 0.0300699
COL1A1 collagen, type I, alpha 1 0.0300372
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0297951
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0297309
PTP4A2 protein tyrosine phosphatase type IVA, member 2 0.0295579
LMAN1 lectin, mannose-binding, 1 0.0294352
FLNB filamin B, beta 0.0292756
AP3B1 adaptor-related protein complex 3, beta 1 subunit 0.0291745
IFIH1 interferon induced with helicase C domain 1 0.0288383
HIBADH 3-hydroxyisobutyrate dehydrogenase 0.0286347
NCOR1 nuclear receptor corepressor 1 0.0285846
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0285233
AKAP12 A kinase (PRKA) anchor protein 12 0.0282909
PHF20 PHD finger protein 20 0.0282505
LAMP2 lysosomal-associated membrane protein 2 0.0281495
KMT2E lysine (K)-specific methyltransferase 2E 0.0279978
CD164 CD164 molecule, sialomucin 0.0278273
FRMD4A FERM domain containing 4A 0.0277802
EDIL3 EGF-like repeats and discoidin I-like domains 3 0.0277634
FBXO7 F-box protein 7 0.0277592
ZCCHC7 zinc finger, CCHC domain containing 7 0.0275769

decreased expression

Symbol Name Standardized Value
IGFBP3 insulin-like growth factor binding protein 3 -0.173665
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0926962
MT2A metallothionein 2A -0.0855285
RPL11 ribosomal protein L11 -0.0786005
TGFBI transforming growth factor, beta-induced, 68kDa -0.0768006
VCL vinculin -0.06687
FTL ferritin, light polypeptide -0.0633453
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0628437
B2M beta-2-microglobulin -0.0571842
CALD1 caldesmon 1 -0.05431
MBD5 methyl-CpG binding domain protein 5 -0.052675
CAV1 caveolin 1, caveolae protein, 22kDa -0.050925
HLA-B major histocompatibility complex, class I, B -0.0502759
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0500742
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0497975
IARS1 isoleucyl-tRNA synthetase 1 -0.0468656
MYOF myoferlin -0.0467832
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0456822
DST dystonin -0.0455674
MEF2A myocyte enhancer factor 2A -0.0449617
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 -0.0446964
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0442346
RTN4 reticulon 4 -0.0437025
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0433678
PRELID2 PRELI domain containing 2 -0.0433003
PRKDC protein kinase, DNA-activated, catalytic polypeptide -0.0414789
HDLBP high density lipoprotein binding protein -0.041353
PDLIM5 PDZ and LIM domain 5 -0.0412866
MBNL1 muscleblind-like splicing regulator 1 -0.0410733
GSE1 Gse1 coiled-coil protein -0.0410295
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0406275
IGFBP7 insulin-like growth factor binding protein 7 -0.0404124
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0403436
RPL15 ribosomal protein L15 -0.0402548
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0398053
RAD51B RAD51 paralog B -0.039684
CD44 CD44 molecule (Indian blood group) -0.0390945
LAMB1 laminin, beta 1 -0.0383912
EXOC6B exocyst complex component 6B -0.0380088
ZNF395 zinc finger protein 395 -0.0376691
IGFBP5 insulin-like growth factor binding protein 5 -0.0376097
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0372971
MAML2 mastermind-like 2 (Drosophila) -0.0366456
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 -0.0366361
SMYD3 SET and MYND domain containing 3 -0.0360673
RPS2 ribosomal protein S2 -0.0360087
PTPN14 protein tyrosine phosphatase, non-receptor type 14 -0.035656
ANKRD17 ankyrin repeat domain 17 -0.034938
MORF4L2 mortality factor 4 like 2 -0.0342874
H3-3B H3.3 histone B -0.0341911
PSD3 pleckstrin and Sec7 domain containing 3 -0.0341678
SUB1 SUB1 homolog (S. cerevisiae) -0.0337696
MYH9 myosin, heavy chain 9, non-muscle -0.0336658
JAK1 Janus kinase 1 -0.0336128
RPS5 ribosomal protein S5 -0.0335771
GFPT2 glutamine-fructose-6-phosphate transaminase 2 -0.0330618
PRKCA protein kinase C, alpha -0.032873
BSG basigin (Ok blood group) -0.0321953
ZNF736 zinc finger protein 736 -0.0319385
USP8 ubiquitin specific peptidase 8 -0.0318099
SEC63 SEC63 homolog (S. cerevisiae) -0.0315964
MTPN myotrophin -0.0315087
NT5C2 5'-nucleotidase, cytosolic II -0.0313107
AKT3 v-akt murine thymoma viral oncogene homolog 3 -0.0311552
SH3RF1 SH3 domain containing ring finger 1 -0.0306963
FAM13B family with sequence similarity 13, member B -0.0304363
PHF21A PHD finger protein 21A -0.0297475
PRKG1 protein kinase, cGMP-dependent, type I -0.0296929
NDFIP1 Nedd4 family interacting protein 1 -0.0293628
KDM3B lysine (K)-specific demethylase 3B -0.0292972
DOCK7 dedicator of cytokinesis 7 -0.0292937
NCOR2 nuclear receptor corepressor 2 -0.0292789
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.02909
FER fer (fps/fes related) tyrosine kinase -0.0290288
BCAS3 breast carcinoma amplified sequence 3 -0.0289102
USP33 ubiquitin specific peptidase 33 -0.0288705
RBFOX2 RNA binding protein, fox-1 homolog (C. elegans) 2 -0.0288029
MYLK myosin light chain kinase -0.0286983
PTPN1 protein tyrosine phosphatase, non-receptor type 1 -0.0286125
EGFR epidermal growth factor receptor -0.0285377
SOD2 superoxide dismutase 2, mitochondrial -0.0283775
CXCL3 chemokine (C-X-C motif) ligand 3 -0.0281138
PALLD palladin, cytoskeletal associated protein -0.0281066
SRPK2 SRSF protein kinase 2 -0.0280305
DPYD dihydropyrimidine dehydrogenase -0.0279787
GMDS GDP-mannose 4,6-dehydratase -0.0276388
RALA v-ral simian leukemia viral oncogene homolog A (ras related) -0.0275808
CLIC4 chloride intracellular channel 4 -0.0275096
PTGES2 prostaglandin E synthase 2 -0.0274769
CCDC88A coiled-coil domain containing 88A -0.0274653
CAMTA1 calmodulin binding transcription activator 1 -0.0273111
SF3B1 splicing factor 3b, subunit 1, 155kDa -0.0272033
NALF1 NALCN channel auxiliary factor 1 -0.0269813
DKK3 dickkopf WNT signaling pathway inhibitor 3 -0.0266577
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0266553
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 -0.0261544
KIF5B kinesin family member 5B -0.0258791
RPS12 ribosomal protein S12 -0.0256801
SPATS2 spermatogenesis associated, serine-rich 2 -0.0254732
MRPS27 mitochondrial ribosomal protein S27 -0.0253459