| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Retinoic acid perturbation in H4 cell line (Tahoe Therapeutics) |
| Similar Terms | |
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200 genes differentially expressed following the Retinoic acid_H4 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| IGFBP3 | insulin-like growth factor binding protein 3 | 0.280615 |
| COL6A3 | collagen, type VI, alpha 3 | 0.213052 |
| HSPA5 | heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) | 0.208123 |
| GNPDA1 | glucosamine-6-phosphate deaminase 1 | 0.045824 |
| ZC3HAV1 | zinc finger CCCH-type, antiviral 1 | 0.0455452 |
| TIMP3 | TIMP metallopeptidase inhibitor 3 | 0.038739 |
| HYCC1 | hyccin PI4KA lipid kinase complex subunit 1 | 0.036771 |
| PTCHD4 | patched domain containing 4 | 0.0364058 |
| SQSTM1 | sequestosome 1 | 0.0331846 |
| SEMA3A | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A | 0.0326235 |
| SLC7A11 | solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 | 0.030391 |
| FTL | ferritin, light polypeptide | 0.0301418 |
| HILPDA | hypoxia inducible lipid droplet-associated | 0.0300045 |
| ANXA2 | annexin A2 | 0.029265 |
| FTH1 | ferritin, heavy polypeptide 1 | 0.0292525 |
| AHNAK | AHNAK nucleoprotein | 0.0283676 |
| WARS1 | tryptophanyl-tRNA synthetase 1 | 0.0250508 |
| VCL | vinculin | 0.0245939 |
| GDF15 | growth differentiation factor 15 | 0.0229204 |
| JUN | jun proto-oncogene | 0.0225153 |
| NALF1 | NALCN channel auxiliary factor 1 | 0.0219653 |
| HDAC9 | histone deacetylase 9 | 0.0212766 |
| ZSWIM6 | zinc finger, SWIM-type containing 6 | 0.0210714 |
| FAM13A | family with sequence similarity 13, member A | 0.0209671 |
| CADM1 | cell adhesion molecule 1 | 0.0205999 |
| RIGI | RNA sensor RIG-I | 0.0205575 |
| CD55 | CD55 molecule, decay accelerating factor for complement (Cromer blood group) | 0.0202163 |
| IER3 | immediate early response 3 | 0.0199117 |
| GRB10 | growth factor receptor-bound protein 10 | 0.0195012 |
| BZW2 | basic leucine zipper and W2 domains 2 | 0.0192315 |
| CALR | calreticulin | 0.0188136 |
| TENT5A | terminal nucleotidyltransferase 5A | 0.018794 |
| PDE4D | phosphodiesterase 4D, cAMP-specific | 0.018592 |
| ANTXR1 | anthrax toxin receptor 1 | 0.0184798 |
| ABL2 | ABL proto-oncogene 2, non-receptor tyrosine kinase | 0.0184769 |
| HIP1 | huntingtin interacting protein 1 | 0.0180686 |
| KCNQ5 | potassium channel, voltage gated KQT-like subfamily Q, member 5 | 0.0178213 |
| AHR | aryl hydrocarbon receptor | 0.0168736 |
| KYNU | kynureninase | 0.0168438 |
| FN1 | fibronectin 1 | 0.0166201 |
| ARIH1 | ariadne RBR E3 ubiquitin protein ligase 1 | 0.0166101 |
| PPP1R15A | protein phosphatase 1, regulatory subunit 15A | 0.0162479 |
| LYPD6B | LY6/PLAUR domain containing 6B | 0.0152683 |
| MYLK | myosin light chain kinase | 0.0149292 |
| PMAIP1 | phorbol-12-myristate-13-acetate-induced protein 1 | 0.0146864 |
| PFKFB4 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 | 0.014585 |
| RPN2 | ribophorin II | 0.0143836 |
| DGKI | diacylglycerol kinase, iota | 0.0143662 |
| IARS1 | isoleucyl-tRNA synthetase 1 | 0.0140807 |
| FLRT2 | fibronectin leucine rich transmembrane protein 2 | 0.0139765 |
| NCOA7 | nuclear receptor coactivator 7 | 0.0137908 |
| CD109 | CD109 molecule | 0.0136107 |
| CTBP2 | C-terminal binding protein 2 | 0.0136095 |
| HSPA9 | heat shock 70kDa protein 9 (mortalin) | 0.0135366 |
| ADGRA3 | adhesion G protein-coupled receptor A3 | 0.013444 |
| TUBB | tubulin, beta class I | 0.0134186 |
| SEMA5A | sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A | 0.0132138 |
| UBASH3B | ubiquitin associated and SH3 domain containing B | 0.0131666 |
| PLEC | plectin | 0.0131472 |
| HERC4 | HECT and RLD domain containing E3 ubiquitin protein ligase 4 | 0.01305 |
| FAM53C | family with sequence similarity 53, member C | 0.0128853 |
| NCOA3 | nuclear receptor coactivator 3 | 0.0128594 |
| FNIP1 | folliculin interacting protein 1 | 0.0128564 |
| FGF13 | fibroblast growth factor 13 | 0.0128502 |
| SP4 | Sp4 transcription factor | 0.012667 |
| KDM4B | lysine (K)-specific demethylase 4B | 0.0123402 |
| FAM20C | family with sequence similarity 20, member C | 0.0123248 |
| EGR1 | early growth response 1 | 0.0122766 |
| C1S | complement component 1, s subcomponent | 0.0122604 |
| SH3KBP1 | SH3-domain kinase binding protein 1 | 0.012243 |
| GNB1 | guanine nucleotide binding protein (G protein), beta polypeptide 1 | 0.0122368 |
| IGFBP5 | insulin-like growth factor binding protein 5 | 0.0121586 |
| WLS | wntless Wnt ligand secretion mediator | 0.0120036 |
| PDIA4 | protein disulfide isomerase family A, member 4 | 0.0119462 |
| INTS6 | integrator complex subunit 6 | 0.0119229 |
| CCDC102B | coiled-coil domain containing 102B | 0.0117351 |
| SLC38A1 | solute carrier family 38, member 1 | 0.0116794 |
| ITPR1 | inositol 1,4,5-trisphosphate receptor, type 1 | 0.0116035 |
| UGDH | UDP-glucose 6-dehydrogenase | 0.0115718 |
| RTN3 | reticulon 3 | 0.0114932 |
| SPMIP6 | sperm microtubule inner protein 6 | 0.0114616 |
| ROBO1 | roundabout, axon guidance receptor, homolog 1 (Drosophila) | 0.0114375 |
| MAP3K13 | mitogen-activated protein kinase kinase kinase 13 | 0.0114353 |
| RAB7A | RAB7A, member RAS oncogene family | 0.0114156 |
| ADIPOR2 | adiponectin receptor 2 | 0.0113776 |
| FBXL7 | F-box and leucine-rich repeat protein 7 | 0.0113511 |
| AADAC | arylacetamide deacetylase | 0.0112354 |
| ARF1 | ADP-ribosylation factor 1 | 0.0110013 |
| AOPEP | aminopeptidase O (putative) | 0.0109821 |
| COL12A1 | collagen, type XII, alpha 1 | 0.0109674 |
| FHIP1A | FHF complex subunit HOOK interacting protein 1A | 0.0109573 |
| MRTFA | myocardin related transcription factor A | 0.0108291 |
| OASL | 2'-5'-oligoadenylate synthetase-like | 0.0107624 |
| DDIT4 | DNA-damage-inducible transcript 4 | 0.0107611 |
| PRSS23 | protease, serine, 23 | 0.0107598 |
| RHEB | Ras homolog enriched in brain | 0.0107343 |
| HBP1 | HMG-box transcription factor 1 | 0.0107138 |
| CFAP44 | cilia and flagella associated protein 44 | 0.0106876 |
| ATF3 | activating transcription factor 3 | 0.0106206 |
| LRRC23 | leucine rich repeat containing 23 | 0.0105703 |
| Symbol | Name | Standardized Value |
|---|---|---|
| MT2A | metallothionein 2A | -0.160844 |
| NDRG1 | N-myc downstream regulated 1 | -0.149056 |
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.0923555 |
| STC1 | stanniocalcin 1 | -0.0795161 |
| NAMPT | nicotinamide phosphoribosyltransferase | -0.0726715 |
| DGKD | diacylglycerol kinase, delta 130kDa | -0.0681485 |
| RPS6 | ribosomal protein S6 | -0.0651702 |
| FNDC3B | fibronectin type III domain containing 3B | -0.0627047 |
| TXNIP | thioredoxin interacting protein | -0.0555325 |
| PABPC1 | poly(A) binding protein, cytoplasmic 1 | -0.0552186 |
| AKAP12 | A kinase (PRKA) anchor protein 12 | -0.0548962 |
| HSP90AB1 | heat shock protein 90kDa alpha (cytosolic), class B member 1 | -0.0538489 |
| ITGA2 | integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) | -0.0535809 |
| RTN4 | reticulon 4 | -0.0530737 |
| RPS2 | ribosomal protein S2 | -0.0524035 |
| CD44 | CD44 molecule (Indian blood group) | -0.0497811 |
| P4HA1 | prolyl 4-hydroxylase, alpha polypeptide I | -0.0480238 |
| ATP13A3 | ATPase type 13A3 | -0.0476858 |
| MSN | moesin | -0.0458506 |
| IGF2BP3 | insulin-like growth factor 2 mRNA binding protein 3 | -0.0455294 |
| PTPN12 | protein tyrosine phosphatase, non-receptor type 12 | -0.0454073 |
| SMAD3 | SMAD family member 3 | -0.0447984 |
| SERPINE1 | serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 | -0.0438162 |
| CALD1 | caldesmon 1 | -0.0425952 |
| TMSB10 | thymosin beta 10 | -0.0424396 |
| ANKRD11 | ankyrin repeat domain 11 | -0.042429 |
| VEGFA | vascular endothelial growth factor A | -0.0404955 |
| VIM | vimentin | -0.0404557 |
| EGFR | epidermal growth factor receptor | -0.0390554 |
| ANKRD12 | ankyrin repeat domain 12 | -0.0382709 |
| TRIO | trio Rho guanine nucleotide exchange factor | -0.037854 |
| ERRFI1 | ERBB receptor feedback inhibitor 1 | -0.037615 |
| MAP4K4 | mitogen-activated protein kinase kinase kinase kinase 4 | -0.0371759 |
| KCNMA1 | potassium channel, calcium activated large conductance subfamily M alpha, member 1 | -0.0370334 |
| GBE1 | glucan (1,4-alpha-), branching enzyme 1 | -0.0364975 |
| ASPH | aspartate beta-hydroxylase | -0.0361039 |
| DTNA | dystrobrevin, alpha | -0.0356965 |
| ABCA1 | ATP-binding cassette, sub-family A (ABC1), member 1 | -0.0354456 |
| AVL9 | AVL9 homolog (S. cerevisiase) | -0.0347143 |
| RFX8 | RFX family member 8, lacking RFX DNA binding domain | -0.0345702 |
| NF1 | neurofibromin 1 | -0.0343651 |
| ANTXR2 | anthrax toxin receptor 2 | -0.0342063 |
| GOLGB1 | golgin B1 | -0.033582 |
| GOLGA4 | golgin A4 | -0.0335814 |
| TGFBI | transforming growth factor, beta-induced, 68kDa | -0.0332658 |
| USP34 | ubiquitin specific peptidase 34 | -0.0329209 |
| DLG1 | discs, large homolog 1 (Drosophila) | -0.0324701 |
| UBA6 | ubiquitin-like modifier activating enzyme 6 | -0.0315484 |
| AKAP9 | A kinase (PRKA) anchor protein 9 | -0.0313336 |
| OSMR | oncostatin M receptor | -0.0312841 |
| NPC1 | Niemann-Pick disease, type C1 | -0.0312834 |
| ELL2 | elongation factor, RNA polymerase II, 2 | -0.0312259 |
| HSP90AA1 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | -0.0309352 |
| HIPK2 | homeodomain interacting protein kinase 2 | -0.0308981 |
| SBF2 | SET binding factor 2 | -0.0307808 |
| COG5 | component of oligomeric golgi complex 5 | -0.0303824 |
| CXCL8 | chemokine (C-X-C motif) ligand 8 | -0.0302552 |
| PTPN14 | protein tyrosine phosphatase, non-receptor type 14 | -0.0297832 |
| SPRED1 | sprouty-related, EVH1 domain containing 1 | -0.029645 |
| YWHAZ | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta | -0.0292799 |
| GLIS3 | GLIS family zinc finger 3 | -0.0288983 |
| LRRFIP1 | leucine rich repeat (in FLII) interacting protein 1 | -0.0280925 |
| ACBD3 | acyl-CoA binding domain containing 3 | -0.0280551 |
| PKM | pyruvate kinase, muscle | -0.0280094 |
| ZNF292 | zinc finger protein 292 | -0.0277598 |
| TNIP1 | TNFAIP3 interacting protein 1 | -0.027628 |
| NPM1 | nucleophosmin (nucleolar phosphoprotein B23, numatrin) | -0.0271939 |
| HIF1A | hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) | -0.027073 |
| POTEF | POTE ankyrin domain family, member F | -0.0268616 |
| IMMP2L | IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) | -0.0265329 |
| BIRC6 | baculoviral IAP repeat containing 6 | -0.02652 |
| SETD5 | SET domain containing 5 | -0.0264858 |
| RNF216 | ring finger protein 216 | -0.0264451 |
| PRRC2C | proline-rich coiled-coil 2C | -0.0264344 |
| MAST4 | microtubule associated serine/threonine kinase family member 4 | -0.0263883 |
| ANKRD17 | ankyrin repeat domain 17 | -0.0259759 |
| TXNRD1 | thioredoxin reductase 1 | -0.0258185 |
| RPS23 | ribosomal protein S23 | -0.0253932 |
| SAMD4A | sterile alpha motif domain containing 4A | -0.025339 |
| RPL9 | ribosomal protein L9 | -0.0248338 |
| PLAUR | plasminogen activator, urokinase receptor | -0.0247912 |
| IQCJ-SCHIP1 | IQCJ-SCHIP1 readthrough | -0.0245683 |
| YBX3 | Y box binding protein 3 | -0.0245166 |
| PDE4B | phosphodiesterase 4B, cAMP-specific | -0.0241081 |
| P4HB | prolyl 4-hydroxylase, beta polypeptide | -0.0241059 |
| ETS1 | v-ets avian erythroblastosis virus E26 oncogene homolog 1 | -0.0238938 |
| BOD1L1 | biorientation of chromosomes in cell division 1-like 1 | -0.0237932 |
| TLN1 | talin 1 | -0.0237914 |
| TAX1BP1 | Tax1 (human T-cell leukemia virus type I) binding protein 1 | -0.0234684 |
| RARS1 | arginyl-tRNA synthetase 1 | -0.023357 |
| FRMD6 | FERM domain containing 6 | -0.0232235 |
| TFPI | tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) | -0.0231757 |
| ACTR2 | ARP2 actin-related protein 2 homolog (yeast) | -0.0230779 |
| ARHGEF12 | Rho guanine nucleotide exchange factor (GEF) 12 | -0.023061 |
| HSPA8 | heat shock 70kDa protein 8 | -0.022999 |
| NAV2 | neuron navigator 2 | -0.0229827 |
| PTMA | prothymosin, alpha | -0.0229145 |
| ZNF148 | zinc finger protein 148 | -0.022529 |
| MYH9 | myosin, heavy chain 9, non-muscle | -0.0224079 |
| TM9SF3 | transmembrane 9 superfamily member 3 | -0.0224058 |
