Ribociclib_MIA PaCa-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Ribociclib perturbation in MIA PaCa-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Ribociclib_MIA PaCa-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
ERRFI1 ERBB receptor feedback inhibitor 1 0.128077
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.110757
TXNRD1 thioredoxin reductase 1 0.100938
PSD3 pleckstrin and Sec7 domain containing 3 0.079451
TM4SF1 transmembrane 4 L six family member 1 0.0773291
BCAR3 breast cancer anti-estrogen resistance 3 0.0749378
CANX calnexin 0.0705434
CD44 CD44 molecule (Indian blood group) 0.0698605
MT2A metallothionein 2A 0.0689599
AHNAK AHNAK nucleoprotein 0.0689496
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 0.0634969
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0599857
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0595967
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 0.0562638
SRGN serglycin 0.0551056
PHLDB2 pleckstrin homology-like domain, family B, member 2 0.0533011
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0531143
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0528027
SLC20A1 solute carrier family 20 (phosphate transporter), member 1 0.0511581
ZMYND8 zinc finger, MYND-type containing 8 0.0507106
RAI1 retinoic acid induced 1 0.0503419
RPL3 ribosomal protein L3 0.0474996
GCLM glutamate-cysteine ligase, modifier subunit 0.0468228
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0458549
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 0.0448444
CAPRIN2 caprin family member 2 0.0443111
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0431599
KPNB1 karyopherin (importin) beta 1 0.0419289
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.0409502
DST dystonin 0.0405611
BMERB1 bMERB domain containing 1 0.0405438
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0398142
VIM vimentin 0.0392989
EMP1 epithelial membrane protein 1 0.0392251
SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9 0.0391765
WWTR1 WW domain containing transcription regulator 1 0.0386053
EZR ezrin 0.0384041
ADGRG6 adhesion G protein-coupled receptor G6 0.0382154
EREG epiregulin 0.0376535
ADARB1 adenosine deaminase, RNA-specific, B1 0.0374063
LDHA lactate dehydrogenase A 0.0373118
USP34 ubiquitin specific peptidase 34 0.0367059
TMSB4X thymosin beta 4, X-linked 0.0365473
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0361859
HDLBP high density lipoprotein binding protein 0.0357092
CELF1 CUGBP, Elav-like family member 1 0.035536
CFLAR CASP8 and FADD-like apoptosis regulator 0.0346357
TMEM41B transmembrane protein 41B 0.0343255
SDC4 syndecan 4 0.0341581
CEP170 centrosomal protein 170kDa 0.0340994
ARID4B AT rich interactive domain 4B (RBP1-like) 0.0337885
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 0.0335287
ACTR2 ARP2 actin-related protein 2 homolog (yeast) 0.0331817
IFNGR2 interferon gamma receptor 2 (interferon gamma transducer 1) 0.0329602
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 0.0327037
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0326342
OGA O-GlcNAcase 0.0323518
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0320622
PARP4 poly (ADP-ribose) polymerase family, member 4 0.0315772
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0314428
MKI67 marker of proliferation Ki-67 0.0310173
APP amyloid beta (A4) precursor protein 0.0306984
ANTXR2 anthrax toxin receptor 2 0.0303145
WSB1 WD repeat and SOCS box containing 1 0.0302424
DPYSL2 dihydropyrimidinase-like 2 0.029875
BZW1 basic leucine zipper and W2 domains 1 0.0298053
GPAT3 glycerol-3-phosphate acyltransferase 3 0.0294945
TPM4 tropomyosin 4 0.0294484
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0292665
PYGB phosphorylase, glycogen; brain 0.0289462
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.0289167
SLC38A2 solute carrier family 38, member 2 0.0281406
DLG1 discs, large homolog 1 (Drosophila) 0.0280329
FLNB filamin B, beta 0.0278646
CFDP1 craniofacial development protein 1 0.0274904
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.0274491
NT5E 5'-nucleotidase, ecto (CD73) 0.0272558
NPAS2 neuronal PAS domain protein 2 0.0270128
MACF1 microtubule-actin crosslinking factor 1 0.0268548
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0267998
RPL4 ribosomal protein L4 0.0267359
KIAA1958 KIAA1958 0.0262845
MT1E metallothionein 1E 0.0262574
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0260399
NIPBL Nipped-B homolog (Drosophila) 0.0259761
SOCS6 suppressor of cytokine signaling 6 0.0258146
RBM39 RNA binding motif protein 39 0.02571
CKAP5 cytoskeleton associated protein 5 0.0256792
RGS4 regulator of G-protein signaling 4 0.025503
DENND5A DENN/MADD domain containing 5A 0.0254808
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.0254697
POM121 POM121 transmembrane nucleoporin 0.0253487
TOP1 topoisomerase (DNA) I 0.0253092
TAS2R14 taste receptor, type 2, member 14 0.0251134
XPO1 exportin 1 0.0250691
RAB10 RAB10, member RAS oncogene family 0.0248869
SOD2 superoxide dismutase 2, mitochondrial 0.0248793
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.024523
CAPN2 calpain 2, (m/II) large subunit 0.0244542
MYH9 myosin, heavy chain 9, non-muscle 0.0243183

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.190168
POTEF POTE ankyrin domain family, member F -0.153013
TMSB10 thymosin beta 10 -0.115013
FTL ferritin, light polypeptide -0.065045
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0621903
EGR1 early growth response 1 -0.0620302
ZFP36L1 ZFP36 ring finger protein-like 1 -0.061398
ENO2 enolase 2 (gamma, neuronal) -0.0574454
EEF2 eukaryotic translation elongation factor 2 -0.0543628
CCNL1 cyclin L1 -0.0469582
FTH1 ferritin, heavy polypeptide 1 -0.0459091
B2M beta-2-microglobulin -0.0455085
TXNIP thioredoxin interacting protein -0.0440544
HMGA1 high mobility group AT-hook 1 -0.0401602
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 -0.0400253
RPS19 ribosomal protein S19 -0.0389606
RPL12 ribosomal protein L12 -0.0358707
TP63 tumor protein p63 -0.0351011
RPS12 ribosomal protein S12 -0.0349706
RAB7A RAB7A, member RAS oncogene family -0.0342426
PLK2 polo-like kinase 2 -0.0336552
ANXA1 annexin A1 -0.0335913
ENO1 enolase 1, (alpha) -0.033291
CADM2 cell adhesion molecule 2 -0.0330319
RPS2 ribosomal protein S2 -0.0322076
RPL36 ribosomal protein L36 -0.0321654
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase -0.0296744
EFNA5 ephrin-A5 -0.0294937
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0280893
HDAC9 histone deacetylase 9 -0.02801
NDRG1 N-myc downstream regulated 1 -0.0277115
CALR calreticulin -0.027528
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C -0.0272864
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0268878
HLA-B major histocompatibility complex, class I, B -0.0267638
TPI1 triosephosphate isomerase 1 -0.0260583
RPL31 ribosomal protein L31 -0.0260482
UBC ubiquitin C -0.025944
RPS3 ribosomal protein S3 -0.025712
RPL35A ribosomal protein L35a -0.0252115
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 -0.0247413
CSMD3 CUB and Sushi multiple domains 3 -0.0244696
PCDH1 protocadherin 1 -0.0241891
AKAP9 A kinase (PRKA) anchor protein 9 -0.0236837
HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 -0.0235506
ZDHHC14 zinc finger, DHHC-type containing 14 -0.0234223
PFN1 profilin 1 -0.023236
TNS3 tensin 3 -0.0230055
HLA-A major histocompatibility complex, class I, A -0.0228074
WASF2 WAS protein family, member 2 -0.0225068
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0224031
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 -0.021545
BSG basigin (Ok blood group) -0.021499
RACK1 receptor for activated C kinase 1 -0.0214163
TIMP2 TIMP metallopeptidase inhibitor 2 -0.0212705
ARF6 ADP-ribosylation factor 6 -0.0212214
ADAM10 ADAM metallopeptidase domain 10 -0.0205972
RPL35 ribosomal protein L35 -0.020564
RPS23 ribosomal protein S23 -0.0203703
TMED2 transmembrane emp24 domain trafficking protein 2 -0.0203696
CFAP299 cilia and flagella associated protein 299 -0.0199097
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 -0.0197583
JUN jun proto-oncogene -0.0194916
HSPG2 heparan sulfate proteoglycan 2 -0.0194581
YBX1 Y box binding protein 1 -0.0192356
LOC102724023 ES1 protein homolog, mitochondrial -0.019131
GNPDA1 glucosamine-6-phosphate deaminase 1 -0.0191024
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0190637
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0190236
RPS14 ribosomal protein S14 -0.0189407
FAM162A family with sequence similarity 162, member A -0.0189062
PDIA3 protein disulfide isomerase family A, member 3 -0.0186617
VEGFA vascular endothelial growth factor A -0.0186443
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0185809
HILPDA hypoxia inducible lipid droplet-associated -0.018215
DPH6 diphthamine biosynthesis 6 -0.0182148
SFTPA2 surfactant protein A2 -0.0175782
RPL23 ribosomal protein L23 -0.0174819
VMP1 vacuole membrane protein 1 -0.0171517
CNOT1 CCR4-NOT transcription complex, subunit 1 -0.0169628
RPS6 ribosomal protein S6 -0.0167318
TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) -0.0167154
EGFR epidermal growth factor receptor -0.0165508
RPL21 ribosomal protein L21 -0.0161942
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0161784
EPHA4 EPH receptor A4 -0.0161704
SDK1 sidekick cell adhesion molecule 1 -0.0161609
MCTP1 multiple C2 domains, transmembrane 1 -0.0160467
ASTN2 astrotactin 2 -0.0159867
SF3B1 splicing factor 3b, subunit 1, 155kDa -0.0158515
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 -0.0157819
TSC22D2 TSC22 domain family, member 2 -0.015756
SNX3 sorting nexin 3 -0.0156661
RPS25 ribosomal protein S25 -0.0156318
RPL7A ribosomal protein L7a -0.0155871
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) -0.0155323
TAPBP TAP binding protein (tapasin) -0.0155285
PLIN2 perilipin 2 -0.0153472
PPDPF pancreatic progenitor cell differentiation and proliferation factor -0.0153231
ATN1 atrophin 1 -0.0152123