Ribociclib_NCI-H1573 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Ribociclib perturbation in NCI-H1573 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Ribociclib_NCI-H1573 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.140965
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.073321
MT2A metallothionein 2A 0.06016
RPS3 ribosomal protein S3 0.0569373
TPT1 tumor protein, translationally-controlled 1 0.0544879
ANKRD10 ankyrin repeat domain 10 0.0514766
KMT2E lysine (K)-specific methyltransferase 2E 0.0514635
NAMPT nicotinamide phosphoribosyltransferase 0.0507511
PTMA prothymosin, alpha 0.0484089
RPL37A ribosomal protein L37a 0.0481422
RPLP1 ribosomal protein, large, P1 0.0466374
FAM13A family with sequence similarity 13, member A 0.0466349
RUNX1 runt-related transcription factor 1 0.0451965
NGLY1 N-glycanase 1 0.0437833
RPS8 ribosomal protein S8 0.0433505
CAPZA2 capping protein (actin filament) muscle Z-line, alpha 2 0.043241
TMEM165 transmembrane protein 165 0.0420224
RPS24 ribosomal protein S24 0.0409408
OGA O-GlcNAcase 0.0394068
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 0.0387522
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0373451
RPS12 ribosomal protein S12 0.0367771
RPL35A ribosomal protein L35a 0.0365849
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.036199
HELZ helicase with zinc finger 0.0358181
SPAG9 sperm associated antigen 9 0.0353736
RNMT RNA (guanine-7-) methyltransferase 0.0353678
RPS25 ribosomal protein S25 0.034777
KDM2A lysine (K)-specific demethylase 2A 0.0346215
ARRDC3 arrestin domain containing 3 0.03457
AGO2 argonaute RISC catalytic component 2 0.0344103
RPS6 ribosomal protein S6 0.0337492
KCMF1 potassium channel modulatory factor 1 0.033552
NAP1L1 nucleosome assembly protein 1-like 1 0.0326368
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0323632
ARID4B AT rich interactive domain 4B (RBP1-like) 0.0318806
RPLP0 ribosomal protein, large, P0 0.0314986
FUT11 fucosyltransferase 11 (alpha (1,3) fucosyltransferase) 0.0312384
UVRAG UV radiation resistance associated 0.0308856
BTG1 B-cell translocation gene 1, anti-proliferative 0.0296873
MATR3 matrin 3 0.0293324
PRRC2C proline-rich coiled-coil 2C 0.0290317
ZNF292 zinc finger protein 292 0.0289339
RPL5 ribosomal protein L5 0.0288792
SEC61G Sec61 gamma subunit 0.028051
ANKRD12 ankyrin repeat domain 12 0.0279751
RPL9 ribosomal protein L9 0.0271851
CSNK1A1 casein kinase 1, alpha 1 0.0270387
WDR45B WD repeat domain 45B 0.0261746
GPHN gephyrin 0.025976
UBE2O ubiquitin-conjugating enzyme E2O 0.0258929
HILPDA hypoxia inducible lipid droplet-associated 0.0249544
RPL30 ribosomal protein L30 0.024806
RPL34 ribosomal protein L34 0.0240292
ZFR zinc finger RNA binding protein 0.0239737
ELL2 elongation factor, RNA polymerase II, 2 0.0239579
USP34 ubiquitin specific peptidase 34 0.0238932
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 0.0238618
RPL7 ribosomal protein L7 0.0237684
ARID2 AT rich interactive domain 2 (ARID, RFX-like) 0.0237617
ADAM17 ADAM metallopeptidase domain 17 0.0236435
MXI1 MAX interactor 1, dimerization protein 0.023642
RPL12 ribosomal protein L12 0.0235736
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0232765
SQSTM1 sequestosome 1 0.0232116
PNISR PNN-interacting serine/arginine-rich protein 0.0231355
ZC3H15 zinc finger CCCH-type containing 15 0.0231324
MAP7 microtubule-associated protein 7 0.023065
RPS23 ribosomal protein S23 0.0229122
RPL26 ribosomal protein L26 0.0228914
DENND4A DENN/MADD domain containing 4A 0.022888
RPL37 ribosomal protein L37 0.0226321
RAB7A RAB7A, member RAS oncogene family 0.0226017
ARL8B ADP-ribosylation factor-like 8B 0.0224726
RPL23 ribosomal protein L23 0.0223675
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0221674
PDE8A phosphodiesterase 8A 0.0220037
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0219324
RNF24 ring finger protein 24 0.0219125
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.02148
EIF1 eukaryotic translation initiation factor 1 0.0214754
ANKRD37 ankyrin repeat domain 37 0.0212588
RAP1B RAP1B, member of RAS oncogene family 0.0209712
AP1S3 adaptor-related protein complex 1, sigma 3 subunit 0.0207661
NUP58 nucleoporin 58 0.0207536
UBE2D3 ubiquitin-conjugating enzyme E2D 3 0.0205965
TOP1 topoisomerase (DNA) I 0.0205858
MED13 mediator complex subunit 13 0.0204453
RPL31 ribosomal protein L31 0.020362
LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 0.0202371
RPL11 ribosomal protein L11 0.020188
MARK3 MAP/microtubule affinity-regulating kinase 3 0.0201699
KDM3A lysine (K)-specific demethylase 3A 0.0201084
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0200635
TSC22D2 TSC22 domain family, member 2 0.0200003
RPS17 ribosomal protein S17 0.0199884
RPS29 ribosomal protein S29 0.0197596
NFE2L2 nuclear factor, erythroid 2-like 2 0.0197585
TRA2A transformer 2 alpha homolog (Drosophila) 0.0197035
RPL17-C18ORF32 RPL17-C18orf32 readthrough 0.0196518

decreased expression

Symbol Name Standardized Value
EGFR epidermal growth factor receptor -0.334313
LMO7 LIM domain 7 -0.141582
LAMC2 laminin, gamma 2 -0.12635
ASPH aspartate beta-hydroxylase -0.114407
THSD4 thrombospondin, type I, domain containing 4 -0.102002
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0982176
LAMA4 laminin, alpha 4 -0.09223
OSMR oncostatin M receptor -0.0854854
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0824366
SCEL sciellin -0.0722202
LDHA lactate dehydrogenase A -0.0711484
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0710141
AHNAK AHNAK nucleoprotein -0.0710094
TXNRD1 thioredoxin reductase 1 -0.0683424
PTPRM protein tyrosine phosphatase, receptor type, M -0.0672053
DSPP dentin sialophosphoprotein -0.0656575
ACTG1 actin gamma 1 -0.0648369
PATJ PATJ crumbs cell polarity complex component -0.0645849
EFNA5 ephrin-A5 -0.0621862
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0609599
HDLBP high density lipoprotein binding protein -0.0589791
LPP LIM domain containing preferred translocation partner in lipoma -0.0576544
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C -0.0573379
CAV1 caveolin 1, caveolae protein, 22kDa -0.0537803
MAML3 mastermind-like 3 (Drosophila) -0.0530307
DOCK5 dedicator of cytokinesis 5 -0.0528376
KRT18 keratin 18, type I -0.0524681
CEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) -0.0521584
ERRFI1 ERBB receptor feedback inhibitor 1 -0.048131
TMSB10 thymosin beta 10 -0.0469908
PDLIM5 PDZ and LIM domain 5 -0.0469199
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0455257
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0452517
LGALS12 lectin, galactoside-binding, soluble, 12 -0.0452412
TMTC2 transmembrane and tetratricopeptide repeat containing 2 -0.0447736
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0444629
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0404422
KRT7 keratin 7, type II -0.0400664
RAB27B RAB27B, member RAS oncogene family -0.0392559
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 -0.0389839
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 -0.0387138
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0383466
MYO1D myosin ID -0.0362378
CCND1 cyclin D1 -0.0361972
TES testin LIM domain protein -0.0359298
LRBA LPS-responsive vesicle trafficking, beach and anchor containing -0.0354213
ANXA2 annexin A2 -0.0349037
RIN2 Ras and Rab interactor 2 -0.0347398
CUX1 cut-like homeobox 1 -0.0339596
FOXP1 forkhead box P1 -0.033875
LRP1B low density lipoprotein receptor-related protein 1B -0.0336541
BZW1 basic leucine zipper and W2 domains 1 -0.0327049
RNF213 ring finger protein 213 -0.0326827
RIMS2 regulating synaptic membrane exocytosis 2 -0.0324299
AKAP13 A kinase (PRKA) anchor protein 13 -0.0320696
FLNB filamin B, beta -0.0317422
RAB10 RAB10, member RAS oncogene family -0.0311799
ARHGAP32 Rho GTPase activating protein 32 -0.030526
MYOF myoferlin -0.0300006
TPM4 tropomyosin 4 -0.0293665
SLC38A2 solute carrier family 38, member 2 -0.0290122
EHBP1 EH domain binding protein 1 -0.0287761
ZBTB20 zinc finger and BTB domain containing 20 -0.0286939
EGR1 early growth response 1 -0.0282398
DSG2 desmoglein 2 -0.0279231
CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) -0.0279092
DOCK9 dedicator of cytokinesis 9 -0.0279073
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0279041
IGFBP5 insulin-like growth factor binding protein 5 -0.0275527
VCL vinculin -0.0275512
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -0.0274333
MYO1E myosin IE -0.0272005
ZMYND8 zinc finger, MYND-type containing 8 -0.0268973
IGFBP3 insulin-like growth factor binding protein 3 -0.0266374
BRIP1 BRCA1 interacting protein C-terminal helicase 1 -0.0259103
RABGAP1L RAB GTPase activating protein 1-like -0.025908
ACSL3 acyl-CoA synthetase long-chain family member 3 -0.0257899
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) -0.025477
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0250206
TBC1D5 TBC1 domain family, member 5 -0.0249831
EXT1 exostosin glycosyltransferase 1 -0.0243745
NCOA3 nuclear receptor coactivator 3 -0.0243568
LIMCH1 LIM and calponin homology domains 1 -0.0238398
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.0236876
FTH1 ferritin, heavy polypeptide 1 -0.023597
PRKCA protein kinase C, alpha -0.0235806
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0234206
TNS3 tensin 3 -0.0233707
TJP1 tight junction protein 1 -0.0232827
MCU mitochondrial calcium uniporter -0.0228566
STAU2 staufen double-stranded RNA binding protein 2 -0.0228345
CMIP c-Maf inducing protein -0.0227708
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0226563
BCAR3 breast cancer anti-estrogen resistance 3 -0.0226193
SOD2 superoxide dismutase 2, mitochondrial -0.0224773
NTN4 netrin 4 -0.0224122
MCTP1 multiple C2 domains, transmembrane 1 -0.0219376
GNPDA1 glucosamine-6-phosphate deaminase 1 -0.0218106
PLS3 plastin 3 -0.0216926
NABP1 nucleic acid binding protein 1 -0.021429