Ribociclib_NCI-H661 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Ribociclib perturbation in NCI-H661 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Ribociclib_NCI-H661 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.23032
ERBB4 erb-b2 receptor tyrosine kinase 4 0.171585
CADM2 cell adhesion molecule 2 0.13454
ADGRL2 adhesion G protein-coupled receptor L2 0.120322
CDH10 cadherin 10, type 2 (T2-cadherin) 0.104414
ZNF292 zinc finger protein 292 0.0845891
JMJD1C jumonji domain containing 1C 0.0801794
NCAM2 neural cell adhesion molecule 2 0.0771334
COL3A1 collagen, type III, alpha 1 0.0714366
ZEB2 zinc finger E-box binding homeobox 2 0.0709134
HDAC9 histone deacetylase 9 0.0666434
RALGAPA1 Ral GTPase activating protein, alpha subunit 1 (catalytic) 0.064987
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.0649002
CTNNA2 catenin (cadherin-associated protein), alpha 2 0.0638606
FNDC3B fibronectin type III domain containing 3B 0.0632611
RBM20 RNA binding motif protein 20 0.0592161
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) 0.055682
DST dystonin 0.0545484
CTNNA3 catenin (cadherin-associated protein), alpha 3 0.0533823
NBAS neuroblastoma amplified sequence 0.0524237
PDGFC platelet derived growth factor C 0.0502617
PDE4D phosphodiesterase 4D, cAMP-specific 0.0501907
RBMS3 RNA binding motif, single stranded interacting protein 3 0.050178
PUM2 pumilio RNA-binding family member 2 0.0488613
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0486189
TAS2R14 taste receptor, type 2, member 14 0.0477354
ELF2 E74-like factor 2 (ets domain transcription factor) 0.04664
ITGAV integrin, alpha V 0.044152
ADGRV1 adhesion G protein-coupled receptor V1 0.0434274
PPP1R12A protein phosphatase 1, regulatory subunit 12A 0.043348
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 0.0432911
SYT1 synaptotagmin I 0.0432394
NFIA nuclear factor I/A 0.0422061
CELF1 CUGBP, Elav-like family member 1 0.0419495
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 0.0419009
SMYD3 SET and MYND domain containing 3 0.0415913
TRA2A transformer 2 alpha homolog (Drosophila) 0.041206
BHLHE40 basic helix-loop-helix family, member e40 0.0410458
WDFY3 WD repeat and FYVE domain containing 3 0.0387474
PGAP1 post-GPI attachment to proteins 1 0.0386386
ANK2 ankyrin 2, neuronal 0.0379951
ZBTB35 zinc finger and BTB domain containing 35 0.0370291
RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 0.0369687
GNA13 guanine nucleotide binding protein (G protein), alpha 13 0.0368705
EMP1 epithelial membrane protein 1 0.0363641
KDM3A lysine (K)-specific demethylase 3A 0.0359944
CSMD3 CUB and Sushi multiple domains 3 0.035642
ETV1 ets variant 1 0.0353595
KMT2C lysine (K)-specific methyltransferase 2C 0.0349656
OSBPL8 oxysterol binding protein-like 8 0.034917
MEF2C myocyte enhancer factor 2C 0.034654
TMEM123 transmembrane protein 123 0.0335701
DENND4C DENN/MADD domain containing 4C 0.0332386
STT3B STT3B, subunit of the oligosaccharyltransferase complex (catalytic) 0.0332301
KCTD16 potassium channel tetramerization domain containing 16 0.0328323
MCTP1 multiple C2 domains, transmembrane 1 0.0319905
AKAP12 A kinase (PRKA) anchor protein 12 0.0319566
GASK1B golgi associated kinase 1B 0.0311739
ZNF217 zinc finger protein 217 0.0310455
RHEB Ras homolog enriched in brain 0.0309426
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0308315
WSB1 WD repeat and SOCS box containing 1 0.0308231
FOXG1 forkhead box G1 0.0302881
RYBP RING1 and YY1 binding protein 0.0300816
USP3 ubiquitin specific peptidase 3 0.030046
ITSN1 intersectin 1 (SH3 domain protein) 0.0298066
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0296973
GNPTAB N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits 0.0296042
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.0293841
SKIC3 SKI3 subunit of superkiller complex 0.029358
MACROD2 MACRO domain containing 2 0.0290453
TMEM64 transmembrane protein 64 0.0288881
RPL6 ribosomal protein L6 0.0288401
RAB6A RAB6A, member RAS oncogene family 0.0287354
NUMB numb homolog (Drosophila) 0.0287199
SCN9A sodium channel, voltage gated, type IX alpha subunit 0.02871
YAP1 Yes-associated protein 1 0.0285446
CCDC112 coiled-coil domain containing 112 0.0275051
PAN3 PAN3 poly(A) specific ribonuclease subunit 0.0273293
RPL26 ribosomal protein L26 0.0270468
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.0269635
MB21D2 Mab-21 domain containing 2 0.0265942
PRKD1 protein kinase D1 0.0265846
SOX5 SRY (sex determining region Y)-box 5 0.0263881
SEMA3D sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 0.0262679
XPO1 exportin 1 0.0261507
PRR16 proline rich 16 0.0261438
EAPP E2F-associated phosphoprotein 0.0260816
BCAS3 breast carcinoma amplified sequence 3 0.0260254
PDSS2 prenyl (decaprenyl) diphosphate synthase, subunit 2 0.0259887
QKI QKI, KH domain containing, RNA binding 0.0259653
ANKRD11 ankyrin repeat domain 11 0.0259571
EPHA3 EPH receptor A3 0.0259519
CLASP2 cytoplasmic linker associated protein 2 0.0257688
DMD dystrophin 0.0257327
MEIS2 Meis homeobox 2 0.0256716
NHSL1 NHS-like 1 0.025387
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.025382
RIOK3 RIO kinase 3 0.0253608
KPNA1 karyopherin alpha 1 (importin alpha 5) 0.0253475

decreased expression

Symbol Name Standardized Value
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.102463
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0887989
POTEF POTE ankyrin domain family, member F -0.0742379
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0689008
PEG10 paternally expressed 10 -0.0631883
PDIA3 protein disulfide isomerase family A, member 3 -0.063187
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha -0.0613047
VIM vimentin -0.0610225
PHIP pleckstrin homology domain interacting protein -0.0587021
LDHA lactate dehydrogenase A -0.055279
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.05341
UTRN utrophin -0.0512893
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0503023
PFN1 profilin 1 -0.0496082
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0484087
SRRM2 serine/arginine repetitive matrix 2 -0.0463692
WASF2 WAS protein family, member 2 -0.0457211
CALR calreticulin -0.0453704
RPS8 ribosomal protein S8 -0.0414723
NCOR1 nuclear receptor corepressor 1 -0.0410684
COL11A1 collagen, type XI, alpha 1 -0.0409376
PRPF8 pre-mRNA processing factor 8 -0.040482
SUGT1 SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) -0.039
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0381964
COL5A2 collagen, type V, alpha 2 -0.0379503
NRDC nardilysin convertase -0.0373362
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0342434
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0340809
GPC4 glypican 4 -0.0336881
PRKDC protein kinase, DNA-activated, catalytic polypeptide -0.0334863
PPDPF pancreatic progenitor cell differentiation and proliferation factor -0.0334271
RPS16 ribosomal protein S16 -0.0333443
RCOR1 REST corepressor 1 -0.0323072
RPL11 ribosomal protein L11 -0.032151
MYL12B myosin, light chain 12B, regulatory -0.0320011
PCDH9 protocadherin 9 -0.0315775
CENPF centromere protein F, 350/400kDa -0.0315301
HS3ST5 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 -0.0311991
RAD51B RAD51 paralog B -0.0310979
SMC3 structural maintenance of chromosomes 3 -0.0310131
PTGES3 prostaglandin E synthase 3 (cytosolic) -0.0310054
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 -0.0308909
TPM3 tropomyosin 3 -0.0305221
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0297446
CDH4 cadherin 4, type 1, R-cadherin (retinal) -0.0290416
GALNTL6 polypeptide N-acetylgalactosaminyltransferase-like 6 -0.028947
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 -0.0289251
CCAR1 cell division cycle and apoptosis regulator 1 -0.0288712
NCOA3 nuclear receptor coactivator 3 -0.0287688
EEF2 eukaryotic translation elongation factor 2 -0.0287179
RSL1D1 ribosomal L1 domain containing 1 -0.0281369
RANBP2 RAN binding protein 2 -0.0281098
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -0.0280211
SFTPA2 surfactant protein A2 -0.0279019
RDX radixin -0.0278688
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0276848
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0275256
SET SET nuclear proto-oncogene -0.027503
GANAB glucosidase, alpha; neutral AB -0.0273873
ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 -0.0271504
RAI1 retinoic acid induced 1 -0.0270704
MKI67 marker of proliferation Ki-67 -0.0266362
FAT1 FAT atypical cadherin 1 -0.0266184
B2M beta-2-microglobulin -0.0265166
ANKRD33B ankyrin repeat domain 33B -0.0265143
CSDE1 cold shock domain containing E1, RNA-binding -0.026431
FBL fibrillarin -0.0263339
TSC22D2 TSC22 domain family, member 2 -0.0263264
RHOA ras homolog family member A -0.0262547
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.026168
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0260583
LAMC1 laminin, gamma 1 (formerly LAMB2) -0.0251413
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme -0.0251211
PAPOLA poly(A) polymerase alpha -0.0246239
DEK DEK proto-oncogene -0.0245392
NONO non-POU domain containing, octamer-binding -0.0245095
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 -0.0242895
UBXN4 UBX domain protein 4 -0.0242365
CSPP1 centrosome and spindle pole associated protein 1 -0.0240667
PDIA6 protein disulfide isomerase family A, member 6 -0.0238779
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0238303
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) -0.0237994
SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A -0.023762
PAK4 p21 protein (Cdc42/Rac)-activated kinase 4 -0.0237349
TPM4 tropomyosin 4 -0.0236819
HTATSF1 HIV-1 Tat specific factor 1 -0.0236206
APP amyloid beta (A4) precursor protein -0.0236152
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase -0.0235041
RALY RALY heterogeneous nuclear ribonucleoprotein -0.023332
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 -0.023176
TMSB4X thymosin beta 4, X-linked -0.0231399
RPN1 ribophorin I -0.0230606
KLHL15 kelch-like family member 15 -0.0230002
CDK6 cyclin-dependent kinase 6 -0.0229267
GOLIM4 golgi integral membrane protein 4 -0.022865
BAZ1B bromodomain adjacent to zinc finger domain, 1B -0.0228132
RLF rearranged L-myc fusion -0.0227828
CNRIP1 cannabinoid receptor interacting protein 1 -0.0227053
CLIC4 chloride intracellular channel 4 -0.0223103
RBM27 RNA binding motif protein 27 -0.0222035