Ribociclib_SW 1271 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Ribociclib perturbation in SW 1271 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Ribociclib_SW 1271 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
TRIO trio Rho guanine nucleotide exchange factor 0.0737034
WAC WW domain containing adaptor with coiled-coil 0.0620513
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0521414
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 0.0470341
SPAG9 sperm associated antigen 9 0.046535
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 0.045963
IGFBP3 insulin-like growth factor binding protein 3 0.0452499
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0447033
KIAA1958 KIAA1958 0.0417494
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0415656
VIM vimentin 0.040254
SGO2 shugoshin 2 0.0377363
SNX14 sorting nexin 14 0.0376047
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0374622
ITCH itchy E3 ubiquitin protein ligase 0.0371013
TAS2R14 taste receptor, type 2, member 14 0.0367291
FNDC3B fibronectin type III domain containing 3B 0.0357537
CANX calnexin 0.0356914
KIAA1328 KIAA1328 0.0352862
ABI2 abl-interactor 2 0.035276
THSD4 thrombospondin, type I, domain containing 4 0.0351118
ATM ATM serine/threonine kinase 0.0348348
CKAP5 cytoskeleton associated protein 5 0.0342669
OLA1 Obg-like ATPase 1 0.0339988
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase 0.0336305
CKAP2 cytoskeleton associated protein 2 0.0329589
PBX3 pre-B-cell leukemia homeobox 3 0.0327808
MKI67 marker of proliferation Ki-67 0.0325405
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0311256
ECT2 epithelial cell transforming 2 0.0310856
RAD21 RAD21 homolog (S. pombe) 0.0308588
OGA O-GlcNAcase 0.0306964
NAP1L1 nucleosome assembly protein 1-like 1 0.0306848
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0297383
ERRFI1 ERBB receptor feedback inhibitor 1 0.0294252
ARID2 AT rich interactive domain 2 (ARID, RFX-like) 0.0292179
TUBB tubulin, beta class I 0.0286986
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0285153
FMN1 formin 1 0.0283392
ZFR zinc finger RNA binding protein 0.0283012
ZNF292 zinc finger protein 292 0.0279684
NKTR natural killer cell triggering receptor 0.0278761
RBM39 RNA binding motif protein 39 0.0275884
AHNAK AHNAK nucleoprotein 0.0274469
AXL AXL receptor tyrosine kinase 0.0270652
KANSL1 KAT8 regulatory NSL complex subunit 1 0.0268563
USP3 ubiquitin specific peptidase 3 0.0266099
PGK1 phosphoglycerate kinase 1 0.0265582
PLEKHA5 pleckstrin homology domain containing, family A member 5 0.0264497
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0262257
MAP3K2 mitogen-activated protein kinase kinase kinase 2 0.0260431
MACF1 microtubule-actin crosslinking factor 1 0.0258652
DERA deoxyribose-phosphate aldolase (putative) 0.0257724
HJURP Holliday junction recognition protein 0.0257261
SMYD3 SET and MYND domain containing 3 0.0257161
AKAP10 A kinase (PRKA) anchor protein 10 0.0256513
CDC73 cell division cycle 73 0.0251582
NCOA6 nuclear receptor coactivator 6 0.0251546
RANBP17 RAN binding protein 17 0.0249765
PHF21A PHD finger protein 21A 0.0249074
G2E3 G2/M-phase specific E3 ubiquitin protein ligase 0.0248264
SMC4 structural maintenance of chromosomes 4 0.0245525
BIRC2 baculoviral IAP repeat containing 2 0.02433
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0241304
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0241293
NT5E 5'-nucleotidase, ecto (CD73) 0.0240675
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0240547
GOLT1B golgi transport 1B 0.0238159
SYNGAP1 synaptic Ras GTPase activating protein 1 0.0236894
ANLN anillin, actin binding protein 0.0236653
MAPKAP1 mitogen-activated protein kinase associated protein 1 0.0236234
ANKRD36 ankyrin repeat domain 36 0.0234427
TMEM135 transmembrane protein 135 0.02339
PRR11 proline rich 11 0.0233893
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0232698
ZNF670 zinc finger protein 670 0.0232325
NCAPD2 non-SMC condensin I complex, subunit D2 0.023176
CEP192 centrosomal protein 192kDa 0.0231157
UQCC1 ubiquinol-cytochrome c reductase complex assembly factor 1 0.023107
GPR107 G protein-coupled receptor 107 0.023074
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.0229329
MPP2 membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) 0.0227765
CBFB core-binding factor, beta subunit 0.0227625
DST dystonin 0.0226533
PUM2 pumilio RNA-binding family member 2 0.0226317
FAM168B family with sequence similarity 168, member B 0.0226266
PAN3 PAN3 poly(A) specific ribonuclease subunit 0.0226001
TMEM123 transmembrane protein 123 0.022591
MATR3 matrin 3 0.0225242
NBAS neuroblastoma amplified sequence 0.0224943
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.0224863
FBXL17 F-box and leucine-rich repeat protein 17 0.022238
TPX2 TPX2, microtubule-associated 0.0222251
CDK13 cyclin-dependent kinase 13 0.0221716
SNX9 sorting nexin 9 0.0221454
ZNF654 zinc finger protein 654 0.0221222
ELOVL5 ELOVL fatty acid elongase 5 0.0220137
BIRC6 baculoviral IAP repeat containing 6 0.022013
TGFBR1 transforming growth factor, beta receptor 1 0.0220035
PJA2 praja ring finger 2, E3 ubiquitin protein ligase 0.0219715

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.436086
TMSB10 thymosin beta 10 -0.117958
MT2A metallothionein 2A -0.0916876
FTL ferritin, light polypeptide -0.0763901
EGR1 early growth response 1 -0.0661147
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0660146
PKM pyruvate kinase, muscle -0.0656834
POTEF POTE ankyrin domain family, member F -0.0566517
LOC112694756 uncharaterized LOC112694756 -0.0560232
SQSTM1 sequestosome 1 -0.0554957
CD44 CD44 molecule (Indian blood group) -0.0524669
UBC ubiquitin C -0.0516182
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0514159
ENO1 enolase 1, (alpha) -0.0468253
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0462164
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0460363
RPS13 ribosomal protein S13 -0.042221
ENO2 enolase 2 (gamma, neuronal) -0.0406211
RPL23 ribosomal protein L23 -0.0392277
RPL37A ribosomal protein L37a -0.0389494
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0385734
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) -0.0374823
RPL19 ribosomal protein L19 -0.0374188
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0369011
B2M beta-2-microglobulin -0.0368913
RPL28 ribosomal protein L28 -0.0366118
BRD4 bromodomain containing 4 -0.0361753
HILPDA hypoxia inducible lipid droplet-associated -0.0357485
RPS27A ribosomal protein S27a -0.0356643
AKAP9 A kinase (PRKA) anchor protein 9 -0.0355415
BRD2 bromodomain containing 2 -0.0355064
RPS29 ribosomal protein S29 -0.0352715
RALY RALY heterogeneous nuclear ribonucleoprotein -0.0347616
RPS12 ribosomal protein S12 -0.0345658
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0327401
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa -0.032717
ANXA1 annexin A1 -0.0326669
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0321463
GOLGB1 golgin B1 -0.0316607
RNASEH2A ribonuclease H2, subunit A -0.0312991
S100A9 S100 calcium binding protein A9 -0.0306482
ANGPTL4 angiopoietin-like 4 -0.0305666
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0303925
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0303423
RPS6 ribosomal protein S6 -0.0303039
RPL31 ribosomal protein L31 -0.0299465
BIRC3 baculoviral IAP repeat containing 3 -0.0298666
RPS10 ribosomal protein S10 -0.0296376
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0290145
ARHGAP26 Rho GTPase activating protein 26 -0.0289326
RPS15 ribosomal protein S15 -0.0282078
RIOK3 RIO kinase 3 -0.0274175
MCL1 myeloid cell leukemia 1 -0.0269823
RPL5 ribosomal protein L5 -0.0266984
RPS8 ribosomal protein S8 -0.0264938
TUBB4B tubulin, beta 4B class IVb -0.026116
RPS17 ribosomal protein S17 -0.0259927
IRAK2 interleukin-1 receptor-associated kinase 2 -0.0258028
YBX1 Y box binding protein 1 -0.0257792
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0253854
RPLP1 ribosomal protein, large, P1 -0.0249799
PCBP2 poly(rC) binding protein 2 -0.0249072
FTH1 ferritin, heavy polypeptide 1 -0.0248356
NAMPT nicotinamide phosphoribosyltransferase -0.0248028
S100A6 S100 calcium binding protein A6 -0.0246881
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.024643
USP15 ubiquitin specific peptidase 15 -0.0245692
RPLP0 ribosomal protein, large, P0 -0.0245535
HM13 histocompatibility (minor) 13 -0.0245069
PFN1 profilin 1 -0.0242271
RPS3 ribosomal protein S3 -0.0241014
CLIC4 chloride intracellular channel 4 -0.0239255
RPL37 ribosomal protein L37 -0.0237732
RPL27A ribosomal protein L27a -0.0234271
RAB1A RAB1A, member RAS oncogene family -0.0233937
DLGAP4 discs, large (Drosophila) homolog-associated protein 4 -0.0232863
RPL7A ribosomal protein L7a -0.0232825
LGALS1 lectin, galactoside-binding, soluble, 1 -0.0230243
RPL15 ribosomal protein L15 -0.0229594
PCCA propionyl CoA carboxylase, alpha polypeptide -0.0228337
WSB1 WD repeat and SOCS box containing 1 -0.0227745
RPL26 ribosomal protein L26 -0.0226744
RACK1 receptor for activated C kinase 1 -0.0225924
INTS6 integrator complex subunit 6 -0.0225696
JUN jun proto-oncogene -0.0225394
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0222706
UBAP2 ubiquitin associated protein 2 -0.0220881
RPL36 ribosomal protein L36 -0.0220553
NR4A2 nuclear receptor subfamily 4, group A, member 2 -0.021655
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 -0.0215722
RPLP2 ribosomal protein, large, P2 -0.0214636
USP53 ubiquitin specific peptidase 53 -0.0214254
NLK nemo-like kinase -0.0213372
FGD6 FYVE, RhoGEF and PH domain containing 6 -0.0207786
SPTAN1 spectrin, alpha, non-erythrocytic 1 -0.0207025
TOP1 topoisomerase (DNA) I -0.0206958
MAML2 mastermind-like 2 (Drosophila) -0.0206775
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0206088
ARL13B ADP-ribosylation factor-like 13B -0.0206047
RPS27 ribosomal protein S27 -0.0205097