Rifampicin Gene Set

Dataset DeepCoverMOA Drug Mechanisms of Action
Category proteomics
Type drug perturbation
Description A rifamycin that is a a semisynthetic antibiotic derived from Amycolatopsis rifamycinica (previously known as Amycolatopsis mediterranei and Streptomyces mediterranei) (Chemical Entities of Biological Interest Ontology, CHEBI_28077)
External Link https://pubchem.ncbi.nlm.nih.gov/compound/135398735
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Genes

197 proteins with high or low expression in Rifampicin relative to other proteins from the DeepCoverMOA Drug Mechanisms of Action dataset.

high expression

Symbol Name Standardized Value
EVA1C eva-1 homolog C (C. elegans) 1.81
ALPK3 alpha-kinase 3 1.64
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 1.26
ABCC9 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 1.19
ABCB4 ATP-binding cassette, sub-family B (MDR/TAP), member 4 0.94
FXN frataxin 0.81
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.73
KLC1 kinesin light chain 1 0.69
FAM117B family with sequence similarity 117, member B 0.61
SATB1 SATB homeobox 1 0.56
TPGS2 tubulin polyglutamylase complex subunit 2 0.55
ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 0.48
SPHK2 sphingosine kinase 2 0.48
ZNF320 zinc finger protein 320 0.46
TM7SF3 transmembrane 7 superfamily member 3 0.45
SASH1 SAM and SH3 domain containing 1 0.45
ZBTB46 zinc finger and BTB domain containing 46 0.44
TBRG4 transforming growth factor beta regulator 4 0.41
TPM4 tropomyosin 4 0.41
MTSS2 MTSS I-BAR domain containing 2 0.41
ZDHHC23 zinc finger, DHHC-type containing 23 0.41
ANAPC16 anaphase promoting complex subunit 16 0.41
HES1 hes family bHLH transcription factor 1 0.4
TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa 0.4
PARPBP PARP1 binding protein 0.39
TMEM106C transmembrane protein 106C 0.39
HIST2H2BF histone cluster 2, H2bf 0.38
MCFD2 multiple coagulation factor deficiency 2 0.38
CAPRIN2 caprin family member 2 0.37
MOCOS molybdenum cofactor sulfurase 0.37
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.37
DCHS1 dachsous cadherin-related 1 0.36
SLC25A39 solute carrier family 25, member 39 0.36
RPL36AL ribosomal protein L36a-like 0.36
HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 0.35
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.35
FAM49B family with sequence similarity 49, member B 0.34
SMO smoothened, frizzled class receptor 0.34
ODC1 ornithine decarboxylase 1 0.34
CCDC85B coiled-coil domain containing 85B 0.34
ZNF14 zinc finger protein 14 0.33
GATC glutamyl-tRNA(Gln) amidotransferase, subunit C 0.33
CERS4 ceramide synthase 4 0.33
COMMD6 COMM domain containing 6 0.33
ZNF160 zinc finger protein 160 0.33
NEMP2 nuclear envelope integral membrane protein 2 0.33
HSBP1 heat shock factor binding protein 1 0.32
ERVK3-1 endogenous retrovirus group K3, member 1 0.32
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 0.31
ZMYND19 zinc finger, MYND-type containing 19 0.31
RCC2 regulator of chromosome condensation 2 0.3
CHCHD2P9 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 9 0.3
ZBED2 zinc finger, BED-type containing 2 0.3
RND3 Rho family GTPase 3 0.29
NR1H2 nuclear receptor subfamily 1, group H, member 2 0.28
FER1L5 fer-1-like family member 5 0.28
FAU Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed 0.28
ZNF808 zinc finger protein 808 0.28
COA4 cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 0.28
PITX2 paired-like homeodomain 2 0.28
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.27
P2RX4 purinergic receptor P2X, ligand gated ion channel, 4 0.27
LSM10 LSM10, U7 small nuclear RNA associated 0.27
CCT5 chaperonin containing TCP1, subunit 5 (epsilon) 0.27
RPS10 ribosomal protein S10 0.27
SIPA1L2 signal-induced proliferation-associated 1 like 2 0.27
EIF3CL eukaryotic translation initiation factor 3, subunit C-like 0.26
GNB2 guanine nucleotide binding protein (G protein), beta polypeptide 2 0.26
STX16 syntaxin 16 0.26
MIEF1 mitochondrial elongation factor 1 0.26
PEX26 peroxisomal biogenesis factor 26 0.26
ZNF525 zinc finger protein 525 0.25
NKAP NFKB activating protein 0.25
SP110 SP110 nuclear body protein 0.25
RPL19 ribosomal protein L19 0.25
COL6A6 collagen, type VI, alpha 6 0.25
XBP1 X-box binding protein 1 0.25
TCP1 t-complex 1 0.25
DBNL drebrin-like 0.25
TDRD9 tudor domain containing 9 0.24
RPL10A ribosomal protein L10a 0.24
PDGFC platelet derived growth factor C 0.23
ACIN1 apoptotic chromatin condensation inducer 1 0.23
ACTN1 actinin, alpha 1 0.23
STOML1 stomatin (EPB72)-like 1 0.23
ACAP3 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 0.23
VWA1 von Willebrand factor A domain containing 1 0.23
RPS20 ribosomal protein S20 0.23
STEAP3 STEAP family member 3, metalloreductase 0.23
ULK1 unc-51 like autophagy activating kinase 1 0.23
RGN regucalcin 0.23
MGA MGA, MAX dimerization protein 0.23
FGFR2 fibroblast growth factor receptor 2 0.23
ERMARD ER membrane-associated RNA degradation 0.22
ATP13A2 ATPase type 13A2 0.22
S100A5 S100 calcium binding protein A5 0.22
SLC45A4 solute carrier family 45, member 4 0.22
CEP70 centrosomal protein 70kDa 0.22
C2ORF42 chromosome 2 open reading frame 42 0.22

low expression

Symbol Name Standardized Value
STEAP1 six transmembrane epithelial antigen of the prostate 1 -1.56
POF1B premature ovarian failure, 1B -1.39
ALKBH5 AlkB family member 5, RNA demethylase -1.22
PIP prolactin-induced protein -0.93
AZGP1 alpha-2-glycoprotein 1, zinc-binding -0.66
NGFR nerve growth factor receptor -0.58
FN1 fibronectin 1 -0.55
SCN11A sodium channel, voltage gated, type XI alpha subunit -0.55
DNAH12 dynein, axonemal, heavy chain 12 -0.55
CLCN3 chloride channel, voltage-sensitive 3 -0.52
FRS2 fibroblast growth factor receptor substrate 2 -0.52
HBA1 hemoglobin, alpha 1 -0.52
SPATA7 spermatogenesis associated 7 -0.5
NFE2L2 nuclear factor, erythroid 2-like 2 -0.5
MED8 mediator complex subunit 8 -0.5
SLC35A5 solute carrier family 35, member A5 -0.48
ERICH5 glutamate-rich 5 -0.47
PTTG1IP pituitary tumor-transforming 1 interacting protein -0.47
TXNDC15 thioredoxin domain containing 15 -0.46
LYST lysosomal trafficking regulator -0.42
NME6 NME/NM23 nucleoside diphosphate kinase 6 -0.41
ZYX zyxin -0.41
PIGH phosphatidylinositol glycan anchor biosynthesis, class H -0.4
NCOA4 nuclear receptor coactivator 4 -0.4
ECM1 extracellular matrix protein 1 -0.4
KLF13 Kruppel-like factor 13 -0.39
MARCKS myristoylated alanine-rich protein kinase C substrate -0.38
CES3 carboxylesterase 3 -0.38
SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal -0.37
PPP1R2 protein phosphatase 1, regulatory (inhibitor) subunit 2 -0.37
TRAF5 TNF receptor-associated factor 5 -0.36
MARCKSL1 MARCKS-like 1 -0.36
HACD1 3-hydroxyacyl-CoA dehydratase 1 -0.36
GREB1 growth regulation by estrogen in breast cancer 1 -0.36
FBRSL1 fibrosin-like 1 -0.36
YAP1 Yes-associated protein 1 -0.35
ENTR1 endosome associated trafficking regulator 1 -0.35
FKBPL FK506 binding protein like -0.35
MTX3 metaxin 3 -0.34
RAB11FIP4 RAB11 family interacting protein 4 (class II) -0.34
KHSRP KH-type splicing regulatory protein -0.34
TMOD3 tropomodulin 3 (ubiquitous) -0.34
IFI30 interferon, gamma-inducible protein 30 -0.33
SELENOK selenoprotein K -0.33
SF3B4 splicing factor 3b, subunit 4, 49kDa -0.33
DERPC DERPC proline and glycine rich nuclear protein -0.32
PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 -0.32
F8A1 coagulation factor VIII-associated 1 -0.32
TFAP2C transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) -0.32
KRT8 keratin 8, type II -0.32
RGPD2 RANBP2-like and GRIP domain containing 2 -0.32
ZNF282 zinc finger protein 282 -0.31
TNNC2 troponin C type 2 (fast) -0.31
STYX serine/threonine/tyrosine interacting protein -0.31
KMT5B lysine methyltransferase 5B -0.31
MYO18B myosin XVIIIB -0.31
FBXL2 F-box and leucine-rich repeat protein 2 -0.31
EPS15L1 epidermal growth factor receptor pathway substrate 15-like 1 -0.31
FUBP1 far upstream element (FUSE) binding protein 1 -0.31
GLMP glycosylated lysosomal membrane protein -0.31
RECK reversion-inducing-cysteine-rich protein with kazal motifs -0.31
SAYSD1 SAYSVFN motif domain containing 1 -0.31
ZNF551 zinc finger protein 551 -0.31
LTN1 listerin E3 ubiquitin protein ligase 1 -0.3
APOL2 apolipoprotein L, 2 -0.3
F13A1 coagulation factor XIII, A1 polypeptide -0.3
UQCC2 ubiquinol-cytochrome c reductase complex assembly factor 2 -0.3
GGPS1 geranylgeranyl diphosphate synthase 1 -0.3
DCP1B decapping mRNA 1B -0.3
PDLIM3 PDZ and LIM domain 3 -0.3
FANCC Fanconi anemia, complementation group C -0.3
TACSTD2 tumor-associated calcium signal transducer 2 -0.3
LETMD1 LETM1 domain containing 1 -0.29
MAP2 microtubule-associated protein 2 -0.29
IGFBP2 insulin-like growth factor binding protein 2, 36kDa -0.29
MISP3 MISP family member 3 -0.29
IRGQ immunity-related GTPase family, Q -0.29
CPE carboxypeptidase E -0.29
RABEP1 rabaptin, RAB GTPase binding effector protein 1 -0.29
SIRT3 sirtuin 3 -0.29
CACNA1E calcium channel, voltage-dependent, R type, alpha 1E subunit -0.29
UBE2F ubiquitin-conjugating enzyme E2F (putative) -0.29
TSC22D4 TSC22 domain family, member 4 -0.29
S100PBP S100P binding protein -0.29
LMLN leishmanolysin-like (metallopeptidase M8 family) -0.29
LMF1 lipase maturation factor 1 -0.28
COPS4 COP9 signalosome subunit 4 -0.28
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.28
GALT galactose-1-phosphate uridylyltransferase -0.28
ESYT2 extended synaptotagmin-like protein 2 -0.28
SYNE4 spectrin repeat containing, nuclear envelope family member 4 -0.28
CCDC158 coiled-coil domain containing 158 -0.28
NDRG2 NDRG family member 2 -0.28
FAM114A1 family with sequence similarity 114, member A1 -0.28
ISOC2 isochorismatase domain containing 2 -0.28
BAK1 BCL2-antagonist/killer 1 -0.28
MCTP2 multiple C2 domains, transmembrane 2 -0.28
TMEM98 transmembrane protein 98 -0.28