Rosiglitazone_NCI-H2122 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Rosiglitazone perturbation in NCI-H2122 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Rosiglitazone_NCI-H2122 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.151367
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.135922
NAMPT nicotinamide phosphoribosyltransferase 0.124071
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.120914
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.109846
GOLGA4 golgin A4 0.108404
RPS6 ribosomal protein S6 0.0918653
NDRG1 N-myc downstream regulated 1 0.091085
IGF2 insulin-like growth factor 2 0.0887533
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0877445
RSF1 remodeling and spacing factor 1 0.0865358
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0722208
FLNB filamin B, beta 0.0707436
PDIA3 protein disulfide isomerase family A, member 3 0.064684
TRIO trio Rho guanine nucleotide exchange factor 0.0628811
PTMA prothymosin, alpha 0.0604928
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0551691
ENO1 enolase 1, (alpha) 0.0550479
HOOK2 hook microtubule-tethering protein 2 0.054332
KTN1 kinectin 1 (kinesin receptor) 0.0540566
CSDE1 cold shock domain containing E1, RNA-binding 0.051799
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 0.0516764
EIF1 eukaryotic translation initiation factor 1 0.0509708
RPL37A ribosomal protein L37a 0.049714
ATP13A3 ATPase type 13A3 0.049149
RPS19 ribosomal protein S19 0.0485286
MTDH metadherin 0.0484223
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.048357
RPL11 ribosomal protein L11 0.0475067
BRD2 bromodomain containing 2 0.0469202
SON SON DNA binding protein 0.0468593
GNAS GNAS complex locus 0.0466444
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0465662
FAM13A family with sequence similarity 13, member A 0.0464266
ZCCHC7 zinc finger, CCHC domain containing 7 0.045289
BBX bobby sox homolog (Drosophila) 0.0447308
OGA O-GlcNAcase 0.0439376
KPNA1 karyopherin alpha 1 (importin alpha 5) 0.0439011
ADAR adenosine deaminase, RNA-specific 0.0438716
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 0.0438608
TOP1 topoisomerase (DNA) I 0.0437589
CCNL1 cyclin L1 0.0436568
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0431516
ROCK1 Rho-associated, coiled-coil containing protein kinase 1 0.0427915
PCBP2 poly(rC) binding protein 2 0.0422247
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide 0.042148
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0415084
OPTN optineurin 0.0411801
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0407328
WDR45B WD repeat domain 45B 0.0406731
DLG1 discs, large homolog 1 (Drosophila) 0.0401529
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0398967
PICALM phosphatidylinositol binding clathrin assembly protein 0.0392882
RPS12 ribosomal protein S12 0.0389142
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0384809
CALR calreticulin 0.038261
CAV1 caveolin 1, caveolae protein, 22kDa 0.0381995
NOP58 NOP58 ribonucleoprotein 0.037691
EIF4B eukaryotic translation initiation factor 4B 0.0375224
CANX calnexin 0.0372291
RPS25 ribosomal protein S25 0.0372152
PGK1 phosphoglycerate kinase 1 0.0371643
PNISR PNN-interacting serine/arginine-rich protein 0.0369808
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0368285
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0366557
PHF21A PHD finger protein 21A 0.0364806
NUP58 nucleoporin 58 0.0364645
RPL7A ribosomal protein L7a 0.0363858
KDM3A lysine (K)-specific demethylase 3A 0.0363527
FTL ferritin, light polypeptide 0.0362564
SET SET nuclear proto-oncogene 0.0362232
ITSN2 intersectin 2 0.0358923
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0356458
PTPRG protein tyrosine phosphatase, receptor type, G 0.0356286
TM9SF3 transmembrane 9 superfamily member 3 0.0354425
HNRNPR heterogeneous nuclear ribonucleoprotein R 0.0353812
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0353337
ANXA1 annexin A1 0.0352301
STC1 stanniocalcin 1 0.0350751
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 0.0348557
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.0347818
CSNK2A2 casein kinase 2, alpha prime polypeptide 0.0346855
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0346731
RPS16 ribosomal protein S16 0.0344839
PJA2 praja ring finger 2, E3 ubiquitin protein ligase 0.034464
AKAP12 A kinase (PRKA) anchor protein 12 0.0340509
NAP1L1 nucleosome assembly protein 1-like 1 0.0337964
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0335096
EEF2 eukaryotic translation elongation factor 2 0.0330012
LRP1B low density lipoprotein receptor-related protein 1B 0.0329517
EXT1 exostosin glycosyltransferase 1 0.0327304
KMT2C lysine (K)-specific methyltransferase 2C 0.0327048
MYOF myoferlin 0.0326905
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 0.0325734
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 0.0321554
SEPTIN2 septin 2 0.0307506
RAB1A RAB1A, member RAS oncogene family 0.0305469
HLA-B major histocompatibility complex, class I, B 0.0304768
CCNY cyclin Y 0.0303588
RBM25 RNA binding motif protein 25 0.0301979

decreased expression

Symbol Name Standardized Value
LMO7 LIM domain 7 -0.204306
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C -0.135425
PDE4D phosphodiesterase 4D, cAMP-specific -0.13177
ATP2C2 ATPase, Ca++ transporting, type 2C, member 2 -0.0985713
ATOSA atos homolog A -0.0889548
BACE2 beta-site APP-cleaving enzyme 2 -0.0853251
ANXA2 annexin A2 -0.0824844
SVIL supervillin -0.0817316
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0752211
SLC12A6 solute carrier family 12 (potassium/chloride transporter), member 6 -0.0668746
CSNK1A1 casein kinase 1, alpha 1 -0.0633112
PRKCA protein kinase C, alpha -0.0616425
JMJD1C jumonji domain containing 1C -0.0607659
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 -0.0591936
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase -0.0577614
INTS6 integrator complex subunit 6 -0.0576838
USP53 ubiquitin specific peptidase 53 -0.057054
SAMD4A sterile alpha motif domain containing 4A -0.055315
RORA RAR-related orphan receptor A -0.0537779
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) -0.0533844
MAML2 mastermind-like 2 (Drosophila) -0.0533319
MAML3 mastermind-like 3 (Drosophila) -0.0531521
MACC1 metastasis associated in colon cancer 1 -0.0530525
DSCAM Down syndrome cell adhesion molecule -0.0524586
IGF1R insulin-like growth factor 1 receptor -0.0519141
EZR ezrin -0.051554
SLTM SAFB-like, transcription modulator -0.0507181
STAU1 staufen double-stranded RNA binding protein 1 -0.0504523
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.050144
TM4SF1 transmembrane 4 L six family member 1 -0.0500451
ERN1 endoplasmic reticulum to nucleus signaling 1 -0.0499848
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0494581
SGIP1 SH3-domain GRB2-like (endophilin) interacting protein 1 -0.047908
ZNF609 zinc finger protein 609 -0.0478598
MAN2A1 mannosidase, alpha, class 2A, member 1 -0.0466603
PTK2 protein tyrosine kinase 2 -0.0465022
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) -0.0452998
DOCK5 dedicator of cytokinesis 5 -0.0450115
CYTH1 cytohesin 1 -0.0441879
DGKD diacylglycerol kinase, delta 130kDa -0.0441868
NABP1 nucleic acid binding protein 1 -0.0433067
FBXO11 F-box protein 11 -0.0419748
S100A10 S100 calcium binding protein A10 -0.0418552
CAPN2 calpain 2, (m/II) large subunit -0.0417078
ARF1 ADP-ribosylation factor 1 -0.0414526
LIMCH1 LIM and calponin homology domains 1 -0.0408281
PATJ PATJ crumbs cell polarity complex component -0.0405247
CERS6 ceramide synthase 6 -0.040463
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase -0.0398111
MYO6 myosin VI -0.0390096
ARHGAP5 Rho GTPase activating protein 5 -0.0388371
CYRIB CYFIP related Rac1 interactor B -0.0382812
TUSC3 tumor suppressor candidate 3 -0.0377214
GULP1 GULP, engulfment adaptor PTB domain containing 1 -0.0372493
LOC112694756 uncharaterized LOC112694756 -0.0371613
SND1 staphylococcal nuclease and tudor domain containing 1 -0.036822
FNIP1 folliculin interacting protein 1 -0.0367428
FAM13B family with sequence similarity 13, member B -0.03645
KYNU kynureninase -0.0364102
BZW1 basic leucine zipper and W2 domains 1 -0.0363949
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0363044
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.036052
TXNRD1 thioredoxin reductase 1 -0.0358897
OSMR oncostatin M receptor -0.0357706
SYNGAP1 synaptic Ras GTPase activating protein 1 -0.0357057
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0346063
MTUS1 microtubule associated tumor suppressor 1 -0.0345652
TJP1 tight junction protein 1 -0.0342968
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.034288
TXNIP thioredoxin interacting protein -0.0342439
RPL35A ribosomal protein L35a -0.0335136
MYO1E myosin IE -0.033372
KLF6 Kruppel-like factor 6 -0.0331096
TJP2 tight junction protein 2 -0.0329998
VMP1 vacuole membrane protein 1 -0.0329983
SETD5 SET domain containing 5 -0.0329818
MED13L mediator complex subunit 13-like -0.0328083
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 -0.0322734
FUS FUS RNA binding protein -0.0315505
RAD51B RAD51 paralog B -0.0315354
ELL2 elongation factor, RNA polymerase II, 2 -0.031469
PMEPA1 prostate transmembrane protein, androgen induced 1 -0.031459
KCNH8 potassium channel, voltage gated eag related subfamily H, member 8 -0.0311896
ANKRD17 ankyrin repeat domain 17 -0.0310273
PDLIM5 PDZ and LIM domain 5 -0.0303304
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.0303175
KATNBL1 katanin p80 subunit B-like 1 -0.0297611
AFF1 AF4/FMR2 family, member 1 -0.0295832
OXSR1 oxidative stress responsive 1 -0.0294024
DENND5B DENN/MADD domain containing 5B -0.0293552
EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 -0.0293506
TAOK3 TAO kinase 3 -0.0293055
QSOX1 quiescin Q6 sulfhydryl oxidase 1 -0.0292705
TMOD3 tropomodulin 3 (ubiquitous) -0.0291929
NPC1 Niemann-Pick disease, type C1 -0.0291291
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0290858
CEMIP cell migration inducing protein, hyaluronan binding -0.0289872
ANTXR2 anthrax toxin receptor 2 -0.0286134
ARB2A ARB2 cotranscriptional regulator A -0.0284033
SRPK2 SRSF protein kinase 2 -0.0283887