S-Adenosyl-L-methionine (disulfate tosylate)_RKO Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description S-Adenosyl-L-methionine (disulfate tosylate) perturbation in RKO cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the S-Adenosyl-L-methionine (disulfate tosylate)_RKO drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FRMD6 FERM domain containing 6 0.133556
ARHGAP22 Rho GTPase activating protein 22 0.100196
ZNF438 zinc finger protein 438 0.0963281
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.0933505
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0817583
EXT1 exostosin glycosyltransferase 1 0.0753745
NABP1 nucleic acid binding protein 1 0.0649398
HMGA2 high mobility group AT-hook 2 0.0618913
NAV2 neuron navigator 2 0.059352
GFPT2 glutamine-fructose-6-phosphate transaminase 2 0.0567835
SAMD4A sterile alpha motif domain containing 4A 0.0513222
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 0.0447639
MCL1 myeloid cell leukemia 1 0.042171
GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 0.0415013
INTS6 integrator complex subunit 6 0.0411904
PHC2 polyhomeotic homolog 2 (Drosophila) 0.0406011
SGMS2 sphingomyelin synthase 2 0.0401601
RAD51B RAD51 paralog B 0.0400414
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0399342
FHIT fragile histidine triad 0.0397232
ZSWIM6 zinc finger, SWIM-type containing 6 0.0380979
LRMDA leucine rich melanocyte differentiation associated 0.035065
DGKI diacylglycerol kinase, iota 0.0332842
ASPH aspartate beta-hydroxylase 0.0322346
SP100 SP100 nuclear antigen 0.0320466
EXOC4 exocyst complex component 4 0.0312636
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0301183
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0282036
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0280501
MSH4 mutS homolog 4 0.0271808
MTAP methylthioadenosine phosphorylase 0.0260747
AGO2 argonaute RISC catalytic component 2 0.0256965
MYRFL myelin regulatory factor-like 0.0255669
TRAPPC9 trafficking protein particle complex 9 0.0253546
WNT2B wingless-type MMTV integration site family, member 2B 0.0253399
AEBP2 AE binding protein 2 0.0246857
RCOR1 REST corepressor 1 0.0246175
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0244746
DOCK1 dedicator of cytokinesis 1 0.0242345
ANK2 ankyrin 2, neuronal 0.02406
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0237875
DDR2 discoidin domain receptor tyrosine kinase 2 0.0235471
BNC2 basonuclin 2 0.0234057
NAV3 neuron navigator 3 0.0224326
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0223991
SLC20A2 solute carrier family 20 (phosphate transporter), member 2 0.022255
ZEB1 zinc finger E-box binding homeobox 1 0.0220593
SFPQ splicing factor proline/glutamine-rich 0.021563
ZC3H12B zinc finger CCCH-type containing 12B 0.0198564
PTPRG protein tyrosine phosphatase, receptor type, G 0.0193479
SMYD3 SET and MYND domain containing 3 0.0192131
PLEKHA6 pleckstrin homology domain containing, family A member 6 0.0191311
AHNAK AHNAK nucleoprotein 0.0188865
EFNB2 ephrin-B2 0.018817
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0186397
CAST calpastatin 0.0181301
HDAC4 histone deacetylase 4 0.0180658
SKI SKI proto-oncogene 0.0180582
FRMD4A FERM domain containing 4A 0.0179068
TIAM2 T-cell lymphoma invasion and metastasis 2 0.0177018
LARP4B La ribonucleoprotein domain family, member 4B 0.0176305
KDM6B lysine (K)-specific demethylase 6B 0.0175246
COL27A1 collagen, type XXVII, alpha 1 0.0175229
RABGAP1L RAB GTPase activating protein 1-like 0.0174537
TRIM44 tripartite motif containing 44 0.0173664
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0173215
MAPKAP1 mitogen-activated protein kinase associated protein 1 0.0171931
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0169163
RIGI RNA sensor RIG-I 0.0167018
FLNB filamin B, beta 0.01629
PUM3 pumilio RNA binding family member 3 0.0162391
WWOX WW domain containing oxidoreductase 0.0161431
GPATCH2L G patch domain containing 2-like 0.0161298
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0159657
RASAL2 RAS protein activator like 2 0.0158934
TRMT11 tRNA methyltransferase 11 homolog (S. cerevisiae) 0.0157429
MTHFD2L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 0.0156391
SHANK1 SH3 and multiple ankyrin repeat domains 1 0.0155228
GPR75-ASB3 GPR75-ASB3 readthrough 0.0155057
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.015373
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 0.0152636
BICD1 bicaudal D homolog 1 (Drosophila) 0.0151351
NEK10 NIMA-related kinase 10 0.015069
PHF14 PHD finger protein 14 0.0144675
DENND1A DENN/MADD domain containing 1A 0.0144314
NLK nemo-like kinase 0.0144294
CCDC91 coiled-coil domain containing 91 0.0143906
KCNMB4 potassium channel subfamily M regulatory beta subunit 4 0.0143811
PRELID2 PRELI domain containing 2 0.0142739
FLNA filamin A, alpha 0.0142456
ADAM32 ADAM metallopeptidase domain 32 0.0142387
EPC2 enhancer of polycomb homolog 2 (Drosophila) 0.0142203
FARS2 phenylalanyl-tRNA synthetase 2, mitochondrial 0.0142152
WDR27 WD repeat domain 27 0.014111
PIEZO1 piezo-type mechanosensitive ion channel component 1 0.0140712
CAPRIN2 caprin family member 2 0.0138508
PRKCE protein kinase C, epsilon 0.0137518
STAU2 staufen double-stranded RNA binding protein 2 0.0137157
PARD3B par-3 family cell polarity regulator beta 0.0136287
PPP1R10 protein phosphatase 1, regulatory subunit 10 0.013426

decreased expression

Symbol Name Standardized Value
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.195599
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.14455
DLC1 DLC1 Rho GTPase activating protein -0.120945
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.118474
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.115589
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0877815
ELL2 elongation factor, RNA polymerase II, 2 -0.0864223
MTDH metadherin -0.0752832
RPS6 ribosomal protein S6 -0.0747993
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.074116
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0727261
LAMB3 laminin, beta 3 -0.071603
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0711936
ACTG1 actin gamma 1 -0.0700541
GOLGA4 golgin A4 -0.067877
RPL8 ribosomal protein L8 -0.066081
TPM4 tropomyosin 4 -0.0647415
MT2A metallothionein 2A -0.059978
STC1 stanniocalcin 1 -0.0599193
NUP58 nucleoporin 58 -0.0584588
RAD21 RAD21 homolog (S. pombe) -0.0581426
BIRC6 baculoviral IAP repeat containing 6 -0.0541226
PDIA3 protein disulfide isomerase family A, member 3 -0.0533057
TXNRD1 thioredoxin reductase 1 -0.051695
CANX calnexin -0.0514546
RPL7A ribosomal protein L7a -0.0495798
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 -0.0493277
TRIO trio Rho guanine nucleotide exchange factor -0.0489772
USP3 ubiquitin specific peptidase 3 -0.0489427
TPD52 tumor protein D52 -0.0475322
RB1CC1 RB1-inducible coiled-coil 1 -0.0468473
GARS1 glycyl-tRNA synthetase 1 -0.0468315
KDM3A lysine (K)-specific demethylase 3A -0.0467874
NF1 neurofibromin 1 -0.0462972
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 -0.0461807
RLF rearranged L-myc fusion -0.0458119
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha -0.0454981
FTL ferritin, light polypeptide -0.0449526
EEF2 eukaryotic translation elongation factor 2 -0.0447768
IARS1 isoleucyl-tRNA synthetase 1 -0.044644
RPL35A ribosomal protein L35a -0.0446018
UBA6 ubiquitin-like modifier activating enzyme 6 -0.0439241
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0436351
OSBPL8 oxysterol binding protein-like 8 -0.043205
KMT2E lysine (K)-specific methyltransferase 2E -0.0426345
ZNF292 zinc finger protein 292 -0.0426015
CALD1 caldesmon 1 -0.0420492
PTK2 protein tyrosine kinase 2 -0.0417453
PRRC2C proline-rich coiled-coil 2C -0.0410597
PGK1 phosphoglycerate kinase 1 -0.0403728
RPLP1 ribosomal protein, large, P1 -0.0401199
PTMA prothymosin, alpha -0.0401169
TTR transthyretin -0.0400544
JMJD1C jumonji domain containing 1C -0.0393415
RTN4 reticulon 4 -0.039302
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0392703
HMGA1 high mobility group AT-hook 1 -0.0391207
SCAF11 SR-related CTD-associated factor 11 -0.0390579
EIF1 eukaryotic translation initiation factor 1 -0.0390426
RPL12 ribosomal protein L12 -0.0385762
BHLHE40 basic helix-loop-helix family, member e40 -0.0384476
CALR calreticulin -0.0381491
WAC WW domain containing adaptor with coiled-coil -0.0371338
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0368836
ZFAND3 zinc finger, AN1-type domain 3 -0.0367334
ENO1 enolase 1, (alpha) -0.0364647
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0359651
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0356914
KMT2C lysine (K)-specific methyltransferase 2C -0.0352258
RPS8 ribosomal protein S8 -0.0349737
KPNB1 karyopherin (importin) beta 1 -0.0348203
KIF5B kinesin family member 5B -0.0346798
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0345596
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0342041
RPL19 ribosomal protein L19 -0.0340026
CALU calumenin -0.0339205
SETD5 SET domain containing 5 -0.0334418
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0328496
PHIP pleckstrin homology domain interacting protein -0.0328364
ARID2 AT rich interactive domain 2 (ARID, RFX-like) -0.0328181
MAST4 microtubule associated serine/threonine kinase family member 4 -0.0323796
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase -0.0323311
BAZ2A bromodomain adjacent to zinc finger domain, 2A -0.0322165
ARFGEF3 ARFGEF family member 3 -0.0321423
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) -0.0319212
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0316119
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0315814
SBF2 SET binding factor 2 -0.0314912
MATR3 matrin 3 -0.0314514
C2CD2 C2 calcium-dependent domain containing 2 -0.0312201
KTN1 kinectin 1 (kinesin receptor) -0.031058
GNAS GNAS complex locus -0.0310493
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0310409
RPL7 ribosomal protein L7 -0.030984
LDHA lactate dehydrogenase A -0.0309559
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.030866
PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 -0.0307282
SRPK2 SRSF protein kinase 2 -0.0305561
TM9SF3 transmembrane 9 superfamily member 3 -0.0301343
UBE2K ubiquitin-conjugating enzyme E2K -0.0299132