SAOS-2 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description Human osteogenic sarcoma, established from the primary osteogenic sarcoma of an 11-year-old Caucasian woman in 1973. (BRENDA Tissue and Enzyme Source Ontology, BTO_0000971)
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Genes

553 genes with high or low copy number in SAOS-2 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LINC00330 long intergenic non-protein coding RNA 330 3.12177
LINC00284 long intergenic non-protein coding RNA 284 3.12177
OR4F4 olfactory receptor, family 4, subfamily F, member 4 3.12177
TSC22D1 TSC22 domain family, member 1 3.12177
FAM135A family with sequence similarity 135, member A 3.12177
SMIM2-IT1 SMIM2 intronic transcript 1 3.12177
LACC1 laccase (multicopper oxidoreductase) domain containing 1 3.12177
CCDC122 coiled-coil domain containing 122 3.12177
SERP2 stress-associated endoplasmic reticulum protein family member 2 3.12177
OGFRL1 opioid growth factor receptor-like 1 3.12177
TSC22D1-AS1 TSC22D1 antisense RNA 1 3.12177
MIR30A microRNA 30a 3.12177
B3GAT2 beta-1,3-glucuronyltransferase 2 3.12177
OR4F13P olfactory receptor, family 4, subfamily F, member 13 pseudogene 3.12177
SDHAF4 succinate dehydrogenase complex assembly factor 4 3.12177
LINC00472 long intergenic non-protein coding RNA 472 3.12177
MIR30C2 microRNA 30c-2 3.12177
KBTBD6 kelch repeat and BTB (POZ) domain containing 6 2.93899
SLC39A11 solute carrier family 39, member 11 2.93899
RIMS1 regulating synaptic membrane exocytosis 1 2.93899
KBTBD7 kelch repeat and BTB (POZ) domain containing 7 2.93899
ELF1 E74-like factor 1 (ets domain transcription factor) 2.93899
MTRF1 mitochondrial translational release factor 1 2.93899
NAA16 N(alpha)-acetyltransferase 16, NatA auxiliary subunit 2.93899
EPSTI1 epithelial stromal interaction 1 (breast) 2.93899
ENOX1 ecto-NOX disulfide-thiol exchanger 1 2.93899
TPTE2P5 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5 2.93899
WBP4 WW domain binding protein 4 2.93899
SMAP1 small ArfGAP 1 2.93899
TNFSF11 tumor necrosis factor (ligand) superfamily, member 11 2.93899
FAM216B family with sequence similarity 216, member B 2.93899
MIR5006 microRNA 5006 2.93899
DNAJC15 DnaJ (Hsp40) homolog, subfamily C, member 15 2.93899
VWA8 von Willebrand factor A domain containing 8 2.93899
OR7E37P olfactory receptor, family 7, subfamily E, member 37 pseudogene 2.93899
DGKH diacylglycerol kinase, eta 2.93899
SUGT1P3 SUGT1 pseudogene 3 2.93899
RGCC regulator of cell cycle 2.93899
OR4F6 olfactory receptor, family 4, subfamily F, member 6 2.76305
LIMD2 LIM domain containing 2 2.76305
STRADA STE20-related kinase adaptor alpha 2.76305
DNAJA1P5 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5 2.76305
LOC729683 uncharacterized LOC729683 2.76305
OLFM3 olfactomedin 3 2.76305
SOX9 SRY (sex determining region Y)-box 9 2.76305
OR4F15 olfactory receptor, family 4, subfamily F, member 15 2.76305
CCDC47 coiled-coil domain containing 47 2.64759
KPNA2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) 2.64759
ACE angiotensin I converting enzyme 2.64759
ZNHIT6 zinc finger, HIT-type containing 6 2.64759
KCNH6 potassium channel, voltage gated eag related subfamily H, member 6 2.64759
SCN4A sodium channel, voltage gated, type IV alpha subunit 2.64759
TK1 thymidine kinase 1, soluble 2.64759
MIR5047 microRNA 5047 2.64759
GH1 growth hormone 1 2.64759
LOC100129138 THAP domain containing, apoptosis associated protein 3 pseudogene 2.64759
FTSJ3 FtsJ homolog 3 (E. coli) 2.64759
MIR4423 microRNA 4423 2.64759
MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 2.64759
SNORD104 small nucleolar RNA, C/D box 104 2.64759
C17ORF99 chromosome 17 open reading frame 99 2.64759
TIMP2 TIMP metallopeptidase inhibitor 2 2.64759
BCL10 B-cell CLL/lymphoma 10 2.64759
MFSD11 major facilitator superfamily domain containing 11 2.64759
LINC00662 long intergenic non-protein coding RNA 662 2.64759
IFI44 interferon-induced protein 44 2.64759
TARSL2 threonyl-tRNA synthetase-like 2 2.64759
ICAM2 intercellular adhesion molecule 2 2.64759
DDAH1 dimethylarginine dimethylaminohydrolase 1 2.64759
DNAH17 dynein, axonemal, heavy chain 17 2.64759
PGS1 phosphatidylglycerophosphate synthase 1 2.64759
FLJ45079 FLJ45079 protein 2.64759
DNAH17-AS1 DNAH17 antisense RNA 1 2.64759
TEX2 testis expressed 2 2.64759
TM2D3 TM2 domain containing 3 2.64759
TMEM235 transmembrane protein 235 2.64759
CYR61 cysteine-rich, angiogenic inducer, 61 2.64759
CD79B CD79b molecule, immunoglobulin-associated beta 2.64759
SOCS3 suppressor of cytokine signaling 3 2.64759
DCAF7 DDB1 and CUL4 associated factor 7 2.64759
MAP3K3 mitogen-activated protein kinase kinase kinase 3 2.64759
TCAM1P testicular cell adhesion molecule 1, pseudogene 2.64759
TMC6 transmembrane channel-like 6 2.64759
MIR4316 microRNA 4316 2.64759
CSH2 chorionic somatomammotropin hormone 2 2.64759
PSMC5 proteasome (prosome, macropain) 26S subunit, ATPase, 5 2.64759
IFI44L interferon-induced protein 44-like 2.64759
LOC100996291 uncharacterized LOC100996291 2.64759
LOC646626 uncharacterized LOC646626 2.64759
SRSF2 serine/arginine-rich splicing factor 2 2.64759
BIRC5 baculoviral IAP repeat containing 5 2.64759
SYNGR2 synaptogyrin 2 2.64759
POLG2 polymerase (DNA directed), gamma 2, accessory subunit 2.64759
ADGRL4 adhesion G protein-coupled receptor L4 2.64759
TNRC6C trinucleotide repeat containing 6C 2.64759
MIR636 microRNA 636 2.64759
C1ORF52 chromosome 1 open reading frame 52 2.64759
DDX42 DEAD (Asp-Glu-Ala-Asp) box helicase 42 2.64759
MILR1 mast cell immunoglobulin-like receptor 1 2.64759
SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 2.64759
VAV3 vav 3 guanine nucleotide exchange factor 2.64759
TNRC6C-AS1 TNRC6C antisense RNA 1 2.64759
ZNF326 zinc finger protein 326 2.64759
LOC100507351 uncharacterized LOC100507351 2.64759
WDR63 WD repeat domain 63 2.64759
MIR3064 microRNA 3064 2.64759
TACO1 translational activator of mitochondrially encoded cytochrome c oxidase I 2.64759
AFMID arylformamidase 2.64759
METTL23 methyltransferase like 23 2.64759
MCOLN3 mucolipin 3 2.64759
CSHL1 chorionic somatomammotropin hormone-like 1 2.64759
TMC8 transmembrane channel-like 8 2.64759
ABCD3 ATP-binding cassette, sub-family D (ALD), member 3 2.59653
S1PR1 sphingosine-1-phosphate receptor 1 2.59653
AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase 2.59653
CLCA3P chloride channel accessory 3, pseudogene 2.59653
LRRC39 leucine rich repeat containing 39 2.59653
C17ORF58 chromosome 17 open reading frame 58 2.59653
UBE2O ubiquitin-conjugating enzyme E2O 2.59653
GLMN glomulin, FKBP associated protein 2.59653
LRRC8B leucine rich repeat containing 8 family, member B 2.59653
SYDE2 synapse defective 1, Rho GTPase, homolog 2 (C. elegans) 2.59653
CLCA4 chloride channel accessory 4 2.59653
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 2.59653
QRICH2 glutamine rich 2 2.59653
GALR2 galanin receptor 2 2.59653
SPHK1 sphingosine kinase 1 2.59653
PRMT6 protein arginine methyltransferase 6 2.59653
SEPT9 septin 9 2.59653
AMZ2P1 archaelysin family metallopeptidase 2 pseudogene 1 2.59653
RNF157-AS1 RNF157 antisense RNA 1 2.59653
KIAA1107 KIAA1107 2.59653
RHBDF2 rhomboid 5 homolog 2 (Drosophila) 2.59653
CLCA2 chloride channel accessory 2 2.59653
CLCA1 chloride channel accessory 1 2.59653
FOXJ1 forkhead box J1 2.59653
MIR548AA1 microRNA 548aa-1 2.59653
MIR4315-1 microRNA 4315-1 2.59653
PECAM1 platelet/endothelial cell adhesion molecule 1 2.59653
MCOLN2 mucolipin 2 2.59653
GFI1 growth factor independent 1 transcription repressor 2.59653
LRRC8D leucine rich repeat containing 8 family, member D 2.59653
RNPC3 RNA-binding region (RNP1, RRM) containing 3 2.59653
SRP68 signal recognition particle 68kDa 2.59653
CYGB cytoglobin 2.59653
CACNG1 calcium channel, voltage-dependent, gamma subunit 1 2.59653
C1ORF146 chromosome 1 open reading frame 146 2.59653
LRRC8C leucine rich repeat containing 8 family, member C 2.59653
RNF157 ring finger protein 157 2.59653
ACTG1P4 actin gamma 1 pseudogene 4 2.59653
ZACN zinc activated ligand-gated ion channel 2.59653
CACNG5 calcium channel, voltage-dependent, gamma subunit 5 2.59653
LMO4 LIM domain only 4 2.59653
NOL11 nucleolar protein 11 2.59653
SASS6 spindle assembly 6 homolog (C. elegans) 2.59653
GEMIN8P4 gem (nuclear organelle) associated protein 8 pseudogene 4 2.59653
CEP95 centrosomal protein 95kDa 2.59653
SNORA38B small nucleolar RNA, H/ACA box 38B 2.59653
NTNG1 netrin G1 2.59653
EXOC7 exocyst complex component 7 2.59653
RTCA RNA 3'-terminal phosphate cyclase 2.59653
BPTF bromodomain PHD finger transcription factor 2.59653
MIR548D1 microRNA 548d-1 2.59653
PRCD progressive rod-cone degeneration 2.59653
FRRS1 ferric-chelate reductase 1 2.59653
SH3GLB1 SH3-domain GRB2-like endophilin B1 2.59653
SLC35A3 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 2.59653
GBP1P1 guanylate binding protein 1, interferon-inducible pseudogene 1 2.59653
EPHX4 epoxide hydrolase 4 2.59653
RPAP2 RNA polymerase II associated protein 2 2.59653
COL24A1 collagen, type XXIV, alpha 1 2.59653
MIR548AP microRNA 548ap 2.59653
ODF2L outer dense fiber of sperm tails 2-like 2.59653
AANAT aralkylamine N-acetyltransferase 2.59653
RBMXL1 RNA binding motif protein, X-linked-like 1 2.59653
BRDT bromodomain, testis-specific 2.59653
CYTH1 cytohesin 1 2.59653
GNA13 guanine nucleotide binding protein (G protein), alpha 13 2.59653
PALMD palmdelphin 2.59653
TRMT13 tRNA methyltransferase 13 homolog (S. cerevisiae) 2.59653
ABCA8 ATP-binding cassette, sub-family A (ABC1), member 8 2.59653
SEC14L1 SEC14-like 1 (S. cerevisiae) 2.59653
SNORD1C small nucleolar RNA, C/D box 1C 2.59653
SNORD1B small nucleolar RNA, C/D box 1B 2.59653
SNORD1A small nucleolar RNA, C/D box 1A 2.59653
GTF2B general transcription factor IIB 2.59653
FLJ27354 uncharacterized LOC400761 2.59653
USP36 ubiquitin specific peptidase 36 2.59653
MXRA7 matrix-remodelling associated 7 2.59653
MIR553 microRNA 553 2.59653
UBALD2 UBA-like domain containing 2 2.59653
HS2ST1 heparan sulfate 2-O-sulfotransferase 1 2.59653
F3 coagulation factor III (thromboplastin, tissue factor) 2.59653
HIAT1 hippocampus abundant transcript 1 2.59653
PSMD12 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 2.59653
ST6GALNAC2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 2.59653
JMJD6 jumonji domain containing 6 2.59653
ST6GALNAC1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 2.59653
CACNG4 calcium channel, voltage-dependent, gamma subunit 4 2.59653
GBP1 guanylate binding protein 1, interferon-inducible 2.59653
GBP6 guanylate binding protein family, member 6 2.59653
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2.59653
SEP15 15 kDa selenoprotein 2.59653
SNHG16 small nucleolar RNA host gene 16 2.59653
GBP3 guanylate binding protein 3 2.59653
AMY2B amylase, alpha 2B (pancreatic) 2.59653
LPAR3 lysophosphatidic acid receptor 3 2.59653
PRPSAP1 phosphoribosyl pyrophosphate synthetase-associated protein 1 2.59653
BTBD8 BTB (POZ) domain containing 8 2.59653
CCBL2 cysteine conjugate-beta lyase 2 2.59653
ADGRL2 adhesion G protein-coupled receptor L2 2.59653
APOH apolipoprotein H (beta-2-glycoprotein I) 2.59653
PKN2 protein kinase N2 2.49065
CTBS chitobiase, di-N-acetyl- 2.49065
EVI5 ecotropic viral integration site 5 2.49065
GBP7 guanylate binding protein 7 2.49065
MIR634 microRNA 634 2.49065
TRIM65 tripartite motif containing 65 2.49065
TRIM47 tripartite motif containing 47 2.49065
GBP4 guanylate binding protein 4 2.49065
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 2.49065
TTLL7 tubulin tyrosine ligase-like family member 7 2.49065
WBP2 WW domain binding protein 2 2.49065
LOC100129620 uncharacterized LOC100129620 2.49065
CDC7 cell division cycle 7 2.49065
SLC44A3 solute carrier family 44, member 3 2.49065
GBP5 guanylate binding protein 5 2.49065
KCNJ2-AS1 KCNJ2 antisense RNA 1 (head to head) 2.49065
GBP2 guanylate binding protein 2, interferon-inducible 2.49065
FBF1 Fas (TNFRSF6) binding factor 1 2.49065
UNC13D unc-13 homolog D (C. elegans) 2.49065
TGFBR3 transforming growth factor, beta receptor III 2.49065
SLC30A7 solute carrier family 30 (zinc transporter), member 7 2.49065
CNN3 calponin 3, acidic 2.49065
RGS9 regulator of G-protein signaling 9 2.49065
DPH5 diphthamide biosynthesis 5 2.49065
SSX2IP synovial sarcoma, X breakpoint 2 interacting protein 2.49065
GCLM glutamate-cysteine ligase, modifier subunit 2.49065
SNX7 sorting nexin 7 2.49065
LINC01555 long intergenic non-protein coding RNA 1555 2.49065
LOC729930 chromosome 11 open reading frame 74 pseudogene 2.49065
MIR760 microRNA 760 2.49065
FAM69A family with sequence similarity 69, member A 2.49065
RWDD3 RWD domain containing 3 2.49065
UOX urate oxidase, pseudogene 2.49065
LOC729970 hCG2028352-like 2.49065
MIR2682 microRNA 2682 2.49065
DNTTIP2 deoxynucleotidyltransferase, terminal, interacting protein 2 2.49065
LPPR5 lipid phosphate phosphatase-related protein type 5 2.49065
FLJ31662 uncharacterized LOC440594 2.49065
SAMD13 sterile alpha motif domain containing 13 2.49065
TMEM56 transmembrane protein 56 2.49065
DBT dihydrolipoamide branched chain transacylase E2 2.49065
LOC146880 Rho GTPase activating protein 27 pseudogene 2.49065
RPL5 ribosomal protein L5 2.49065
CDK3 cyclin-dependent kinase 3 2.49065
SNORA66 small nucleolar RNA, H/ACA box 66 2.49065
SPATA1 spermatogenesis associated 1 2.49065
COL11A1 collagen, type XI, alpha 1 2.49065
KCNJ16 potassium channel, inwardly rectifying subfamily J, member 16 2.49065
CYB561 cytochrome b561 2.49065
RPF1 ribosome production factor 1 homolog (S. cerevisiae) 2.49065
EXTL2 exostosin-like glycosyltransferase 2 2.49065
ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2.49065
TMEM56-RWDD3 TMEM56-RWDD3 readthrough 2.49065
ACOX1 acyl-CoA oxidase 1, palmitoyl 2.49065
MRPL38 mitochondrial ribosomal protein L38 2.49065
CDC14A cell division cycle 14A 2.49065
DNASE2B deoxyribonuclease II beta 2.49065
LOC729987 uncharacterized LOC729987 2.49065
GPR88 G protein-coupled receptor 88 2.49065
UNK unkempt family zinc finger 2.49065
ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 2.49065
MIR137 microRNA 137 2.49065
EVPL envoplakin 2.49065
GNG5 guanine nucleotide binding protein (G protein), gamma 5 2.49065
PRKCA protein kinase C, alpha 2.49065
SNORD21 small nucleolar RNA, C/D box 21 2.49065
HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) 2.49065
VCAM1 vascular cell adhesion molecule 1 2.49065
PLEKHM1P pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene 2.49065
HELZ helicase with zinc finger 2.49065
BARHL2 BarH-like homeobox 2 2.44392
MIG7 mig-7 2.44392
ZNF644 zinc finger protein 644 2.44392
SEC22B SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) 2.44392
DR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2) 2.44392
KCNJ2 potassium channel, inwardly rectifying subfamily J, member 2 2.44392
BCAR3 breast cancer anti-estrogen resistance 3 2.44392
TMED5 transmembrane emp24 protein transport domain containing 5 2.44392
CEP112 centrosomal protein 112kDa 2.44392
CCDC18 coiled-coil domain containing 18 2.44392
ARHGAP29 Rho GTPase activating protein 29 2.44392
LOC653513 phosphodiesterase 4D interacting protein pseudogene 2.44392
MTF2 metal response element binding transcription factor 2 2.44392
PDE4DIP phosphodiesterase 4D interacting protein 2.44392
LOC100129046 uncharacterized LOC100129046 2.44392
FNBP1L formin binding protein 1-like 2.44392
LOC100131564 uncharacterized LOC100131564 2.44392
PTBP2 polypyrimidine tract binding protein 2 2.44392
LPPR4 lipid phosphate phosphatase-related protein type 4 2.44392
NOTCH2NL notch 2 N-terminal like 2.41451
LSM14A LSM14A, SCD6 homolog A (S. cerevisiae) 2.41451
SCARNA16 small Cajal body-specific RNA 16 2.41451
MARCH10 membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase 2.41451
GPI glucose-6-phosphate isomerase 2.41451
DPYD-AS1 DPYD antisense RNA 1 2.41451
KIAA0355 KIAA0355 2.41451
PDCD2L programmed cell death 2-like 2.41451
SCGB1B2P secretoglobin, family 1B, member 2, pseudogene 2.39327
WTIP Wilms tumor 1 interacting protein 2.39327
SCGB2B2 secretoglobin, family 2B, member 2 2.39327
ZNF302 zinc finger protein 302 2.39327
KCTD15 potassium channel tetramerization domain containing 15 2.39327
RNU6-31P RNA, U6 small nuclear 31, pseudogene 2.39327
SCGB2B3P secretoglobin, family 2B, member 3, pseudogene 2.39327
LOC400685 uncharacterized LOC400685 2.39327
ZNF30 zinc finger protein 30 2.39327
PPIAL4A peptidylprolyl isomerase A (cyclophilin A)-like 4A 2.39327
ZNF181 zinc finger protein 181 2.39327
NBPF14 neuroblastoma breakpoint family, member 14 2.39327
LINC00904 long intergenic non-protein coding RNA 904 2.39327
ZNF599 zinc finger protein 599 2.39327
CHST8 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 2.39327
UBA2 ubiquitin-like modifier activating enzyme 2 2.39327
PPIAL4D peptidylprolyl isomerase A (cyclophilin A)-like 4D 2.39327
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 2.39327
HFE2 hemochromatosis type 2 (juvenile) 2.36889
PEPD peptidase D 2.36889
CEBPA-AS1 CEBPA antisense RNA 1 (head to head) 2.36889
CEBPA CCAAT/enhancer binding protein (C/EBP), alpha 2.36889
CEBPG CCAAT/enhancer binding protein (C/EBP), gamma 2.36889
NBPF9 neuroblastoma breakpoint family, member 9 2.36889
MIR5087 microRNA 5087 2.36889
TXNIP thioredoxin interacting protein 2.36889
ITGA10 integrin, alpha 10 2.35236
PDZK1 PDZ domain containing 1 2.35236
POLR3C polymerase (RNA) III (DNA directed) polypeptide C (62kD) 2.35236
PIAS3 protein inhibitor of activated STAT, 3 2.35236
NUDT17 nudix (nucleoside diphosphate linked moiety X)-type motif 17 2.35236
RBM8A RNA binding motif protein 8A 2.35236
RNF115 ring finger protein 115 2.35236
GJA5 gap junction protein, alpha 5, 40kDa 2.35236
LIX1L Lix1 homolog (chicken) like 2.35236
GNRHR2 gonadotropin-releasing hormone (type 2) receptor 2, pseudogene 2.35236
ANKRD35 ankyrin repeat domain 35 2.35236
PEX11B peroxisomal biogenesis factor 11 beta 2.35236
GPHRB golgi pH regulator B 2.35236
GJA8 gap junction protein, alpha 8, 50kDa 2.35236
CD160 CD160 molecule 2.35236
ANKRD34A ankyrin repeat domain 34A 2.3178
POLR3GL polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like 2.3178
NBPF8 neuroblastoma breakpoint family, member 8 2.3178
GPHRA golgi pH regulator A 2.3178
ACP6 acid phosphatase 6, lysophosphatidic 2.30944
NBPF10 neuroblastoma breakpoint family, member 10 2.30944
NXPH1 neurexophilin 1 2.30944
HYDIN2 HYDIN2, axonemal central pair apparatus protein (pseudogene) 2.30944
NBPF12 neuroblastoma breakpoint family, member 12 2.30944
BCL9 B-cell CLL/lymphoma 9 2.30944
LOC728989 phosphodiesterase 4D interacting protein pseudogene 2.30944
FMO5 flavin containing monooxygenase 5 2.30944
CHD1L chromodomain helicase DNA binding protein 1-like 2.30944
PRKAB2 protein kinase, AMP-activated, beta 2 non-catalytic subunit 2.283
NBPF13P neuroblastoma breakpoint family, member 13, pseudogene 2.283
LINC00624 long intergenic non-protein coding RNA 624 2.283
RSPO2 R-spondin 2 2.24139
PER4 period circadian clock 3 pseudogene 2.24139
SYBU syntabulin (syntaxin-interacting) 2.24139
EIF3E eukaryotic translation initiation factor 3, subunit E 2.2355
PKHD1L1 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 2.23324
EBAG9 estrogen receptor binding site associated, antigen, 9 2.23324
ANGPT1 angiopoietin 1 2.22917
ABRA actin binding Rho activating protein 2.22793
OXR1 oxidation resistance 1 2.22783
MIR30B microRNA 30b 2.22633
MIR30D microRNA 30d 2.22633
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 2.22558
MIR3610 microRNA 3610 2.22558
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2.22558
ZFAT-AS1 ZFAT antisense RNA 1 2.22558
RAD21-AS1 RAD21 antisense RNA 1 2.22558
LOC286094 2.22558
UTP23 UTP23, small subunit (SSU) processome component, homolog (yeast) 2.22558
RAD21 RAD21 homolog (S. pombe) 2.22558
ZFAT zinc finger and AT hook domain containing 2.22291
EIF3H eukaryotic translation initiation factor 3, subunit H 2.22291
AARD alanine and arginine rich domain containing protein 2.22291
LINC00536 long intergenic non-protein coding RNA 536 2.21727
HHLA1 HERV-H LTR-associating 1 2.21258
MED30 mediator complex subunit 30 2.21258
SLC30A8 solute carrier family 30 (zinc transporter), member 8 2.21258
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b 2.21096
EFR3A EFR3 homolog A (S. cerevisiae) 2.21096
COLEC10 collectin sub-family member 10 (C-type lectin) 2.21096
MAL2 mal, T-cell differentiation protein 2 (gene/pseudogene) 2.21096
OC90 otoconin 90 2.21096
SAMD12-AS1 SAMD12 antisense RNA 1 2.20309
DSCC1 DNA replication and sister chromatid cohesion 1 2.20309
TAF2 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa 2.20309
NOV nephroblastoma overexpressed 2.20309
ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 2.20309
MIR5194 microRNA 5194 2.20053
ASAP1-IT1 ASAP1 intronic transcript 1 2.20053
EXT1 exostosin glycosyltransferase 1 2.20053
FAM49B family with sequence similarity 49, member B 2.19863
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 2.19863
ADCY8 adenylate cyclase 8 (brain) 2.19301
SAMD12 sterile alpha motif domain containing 12 2.18778
DERL1 derlin 1 2.18778
ZHX2 zinc fingers and homeoboxes 2 2.18778
FAM83A-AS1 FAM83A antisense RNA 1 2.18778
SACK1A scaffolding CK1 anchoring protein A 2.18778
GSDMC gasdermin C 2.18778
C8ORF76 chromosome 8 open reading frame 76 2.18124
DEPTOR DEP domain containing MTOR-interacting protein 2.18124
MIR4663 microRNA 4663 2.18124
KLHL38 kelch-like family member 38 2.17694
RNF139 ring finger protein 139 2.17694
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 2.16947
MTBP MDM2 binding protein 2.16947
WDYHV1 WDYHV motif containing 1 2.16947
ZHX1 zinc fingers and homeoboxes 1 2.16947
HAS2-AS1 HAS2 antisense RNA 1 2.16947
TRMT12 tRNA methyltransferase 12 homolog (S. cerevisiae) 2.16947
HAS2 hyaluronan synthase 2 2.16947
FBXO32 F-box protein 32 2.16947
ATAD2 ATPase family, AAA domain containing 2 2.16947
ANXA13 annexin A13 2.16816
NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 2.16816
MTSS1 metastasis suppressor 1 2.16816
TMEM65 transmembrane protein 65 2.16816
TATDN1 TatD DNase domain containing 1 2.16816
FAM91A1 family with sequence similarity 91, member A1 2.16625
MRPL13 mitochondrial ribosomal protein L13 2.16625
FER1L6-AS1 FER1L6 antisense RNA 1 2.16625
COL14A1 collagen, type XIV, alpha 1 2.16625
ZNF572 zinc finger protein 572 2.16564
SNORA31 small nucleolar RNA, H/ACA box 31 2.16564
KIAA0196 KIAA0196 2.16459
SQLE squalene epoxidase 2.16459
FER1L6 fer-1-like family member 6 2.16459
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 2.16307
TRIB1 tribbles pseudokinase 1 2.16176
CCDC26 CCDC26 long non-coding RNA 2.16091
LINC00861 long intergenic non-protein coding RNA 861 2.15967
SNORA25 small nucleolar RNA, H/ACA box 25 2.15953
FAM84B family with sequence similarity 84, member B 2.15847
LMBRD1 LMBR1 domain containing 1 2.15316
COL9A1 collagen, type IX, alpha 1 2.15316
COL19A1 collagen, type XIX, alpha 1 2.15316
ADGRB3 adhesion G protein-coupled receptor B3 2.14116
LINC00511 long intergenic non-protein coding RNA 511 2.14116
FPGT fucose-1-phosphate guanylyltransferase 2.1316
LRRIQ3 leucine-rich repeats and IQ motif containing 3 2.1316
FPGT-TNNI3K FPGT-TNNI3K readthrough 2.1316
TYW3 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) 2.12931
TNNI3K TNNI3 interacting kinase 2.12931
CRYZ crystallin, zeta (quinone reductase) 2.12931
LINC00673 long intergenic non-protein coding RNA 673 2.12703
AKAP11 A kinase (PRKA) anchor protein 11 2.12703
SNORD45A small nucleolar RNA, C/D box 45A 2.12225
ST6GALNAC3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2.12225
RABGGTB Rab geranylgeranyltransferase, beta subunit 2.12225
SLC44A5 solute carrier family 44, member 5 2.12225
ACADM acyl-CoA dehydrogenase, C-4 to C-12 straight chain 2.12225
LHX8 LIM homeobox 8 2.12225
ASB17 ankyrin repeat and SOCS box containing 17 2.12225
SNORD45C small nucleolar RNA, C/D box 45C 2.12225
MSH4 mutS homolog 4 2.12225
SNORD45B small nucleolar RNA, C/D box 45B 2.12225
LINC00674 long intergenic non-protein coding RNA 674 2.10992
NEXN nexilin (F actin binding protein) 2.10992
AMZ2 archaelysin family metallopeptidase 2 2.10992
MGC27382 uncharacterized MGC27382 2.10992
SLC16A6 solute carrier family 16, member 6 2.10992
WIPI1 WD repeat domain, phosphoinositide interacting 1 2.10992
LOC440461 Rho GTPase activating protein 27 pseudogene 2.10992
CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) 2.10992
FAM20A family with sequence similarity 20, member A 2.10992
GH2 growth hormone 2 2.10992
ARSG arylsulfatase G 2.10992
PTGFR prostaglandin F receptor (FP) 2.10992
ERN1 endoplasmic reticulum to nucleus signaling 1 2.10992
GIPC2 GIPC PDZ domain containing family, member 2 2.10992
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha 2.10992
FAM73A family with sequence similarity 73, member A 2.10992
DNAJB4 DnaJ (Hsp40) homolog, subfamily B, member 4 2.10992
MIR635 microRNA 635 2.10992
FUBP1 far upstream element (FUSE) binding protein 1 2.10992
AMY1A amylase, alpha 1A (salivary) 2.10617
AMY2A amylase, alpha 2A (pancreatic) 2.10617
LRRC37A3 leucine rich repeat containing 37, member A3 2.10597
USP33 ubiquitin specific peptidase 33 2.10038
ST6GALNAC5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 2.10038
AK5 adenylate kinase 5 2.10038
PIGK phosphatidylinositol glycan anchor biosynthesis, class K 2.10038
ZZZ3 zinc finger, ZZ-type containing 3 2.10038
SLC25A51P1 solute carrier family 25, member 51 pseudogene 1 2.10038
AXIN2 axin 2 2.09431
MIR137HG MIR137 host gene 2.09431
PRKACB protein kinase, cAMP-dependent, catalytic, beta 2.09431
MIR548W microRNA 548w 2.09073
DPYD dihydropyrimidine dehydrogenase 2.08781
FCGR1C Fc fragment of IgG, high affinity Ic, receptor (CD64), pseudogene 2.08781
PCAT1 prostate cancer associated transcript 1 (non-protein coding) 2.08634
NBPF15 neuroblastoma breakpoint family, member 15 2.08391
EYS eyes shut homolog (Drosophila) 2.08391
PPIAL4E peptidylprolyl isomerase A (cyclophilin A)-like 4E 2.08334
PPIAL4F peptidylprolyl isomerase A (cyclophilin A)-like 4F 2.08021
LOC388692 uncharacterized LOC388692 2.07855
LOC645166 lymphocyte-specific protein 1 pseudogene 2.07822
MIR1206 microRNA 1206 2.07612
MIR1208 microRNA 1208 2.07136
MIR1205 microRNA 1205 2.07136
MIR1207 microRNA 1207 2.07136
TMEM75 transmembrane protein 75 2.06401
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
NDRG1 N-myc downstream regulated 1 2.05864
POU5F1B POU class 5 homeobox 1B 2.05836
MIR2053 microRNA 2053 2.05778
SLA Src-like-adaptor 2.05778
WISP1 WNT1 inducible signaling pathway protein 1 2.05778
HPYR1 Helicobacter pylori responsive 1 (non-protein coding) 2.05635
LRRC6 leucine rich repeat containing 6 2.0557
CSMD3 CUB and Sushi multiple domains 3 2.05477
PHF20L1 PHD finger protein 20-like 1 2.05441
TMEM71 transmembrane protein 71 2.05422
TRPS1 trichorhinophalangeal syndrome I 2.05422
TG thyroglobulin 2.054
KCNQ3 potassium channel, voltage gated KQT-like subfamily Q, member 3 2.054
SNORD112 small nucleolar RNA, C/D box 112 2.04693
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
ERICH1-AS1 ERICH1 antisense RNA 1 -3.50611
ERICH1 glutamate-rich 1 -3.50611
LOC442497 uncharacterized LOC442497 -3.39516
PRKAR1B protein kinase, cAMP-dependent, regulatory, type I, beta -3.39516
PDGFA platelet-derived growth factor alpha polypeptide -3.39516
FLJ44511 uncharacterized LOC441307 -3.39516
FAM20C family with sequence similarity 20, member C -3.39516
HTR2A 5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled -3.11641
CDADC1 cytidine and dCMP deaminase domain containing 1 -3.03082
SHBG sex hormone-binding globulin -3.03082
CAB39L calcium binding protein 39-like -3.03082
CYSLTR2 cysteinyl leukotriene receptor 2 -2.9644
ATP1B2 ATPase, Na+/K+ transporting, beta 2 polypeptide -2.9644
TDRP testis development related protein -2.93416
FBXO25 F-box protein 25 -2.93416
TP53 tumor protein p53 -2.91268
ZNF596 zinc finger protein 596 -2.88947
RPL23AP53 ribosomal protein L23a pseudogene 53 -2.88947
RB1 retinoblastoma 1 -2.83092