SBI-0640756_SK-MEL-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description SBI-0640756 perturbation in SK-MEL-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the SBI-0640756_SK-MEL-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.12527
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 0.115852
IGFBP3 insulin-like growth factor binding protein 3 0.0917348
ANGPTL4 angiopoietin-like 4 0.0820207
ENO1 enolase 1, (alpha) 0.0644902
ICAM1 intercellular adhesion molecule 1 0.0619424
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0571999
ASPH aspartate beta-hydroxylase 0.053266
FNDC3B fibronectin type III domain containing 3B 0.0529357
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0526116
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0483315
RNF213 ring finger protein 213 0.0467744
ENO2 enolase 2 (gamma, neuronal) 0.0466636
SQSTM1 sequestosome 1 0.0418781
HLA-B major histocompatibility complex, class I, B 0.0401969
ATF4 activating transcription factor 4 0.0389813
HLA-A major histocompatibility complex, class I, A 0.0378512
BICD1 bicaudal D homolog 1 (Drosophila) 0.0376984
RUNX1 runt-related transcription factor 1 0.0375202
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0368119
ADAR adenosine deaminase, RNA-specific 0.0357418
FLNA filamin A, alpha 0.0350681
IFI6 interferon, alpha-inducible protein 6 0.034231
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 0.0334224
NFE2L1 nuclear factor, erythroid 2-like 1 0.032384
RPS17 ribosomal protein S17 0.0318035
TMTC2 transmembrane and tetratricopeptide repeat containing 2 0.0317879
PKM pyruvate kinase, muscle 0.0315142
TLN1 talin 1 0.031187
TPI1 triosephosphate isomerase 1 0.030625
RPS3 ribosomal protein S3 0.029876
CCND1 cyclin D1 0.0297647
EHBP1 EH domain binding protein 1 0.0293281
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.0292385
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0290773
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0289561
PTPRK protein tyrosine phosphatase, receptor type, K 0.0287121
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.027971
SRRM2 serine/arginine repetitive matrix 2 0.0278017
NT5E 5'-nucleotidase, ecto (CD73) 0.0271831
SVIL supervillin 0.0271351
TENM3 teneurin transmembrane protein 3 0.026762
KTN1 kinectin 1 (kinesin receptor) 0.0265102
SATB2 SATB homeobox 2 0.0264074
DCAF7 DDB1 and CUL4 associated factor 7 0.0262257
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0260417
RPS12 ribosomal protein S12 0.0256154
EFCAB13 EF-hand calcium binding domain 13 0.0252799
OAS2 2'-5'-oligoadenylate synthetase 2, 69/71kDa 0.0251195
IFI44L interferon-induced protein 44-like 0.0243963
INTS6 integrator complex subunit 6 0.0243857
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0243549
HSPA8 heat shock 70kDa protein 8 0.0241852
GOLGB1 golgin B1 0.0240879
S100A13 S100 calcium binding protein A13 0.0238549
BPTF bromodomain PHD finger transcription factor 0.0235712
WNT2B wingless-type MMTV integration site family, member 2B 0.023478
BRD2 bromodomain containing 2 0.0234634
CHMP5 charged multivesicular body protein 5 0.0228565
SHISA5 shisa family member 5 0.0228541
WWTR1 WW domain containing transcription regulator 1 0.022671
CHRM3 cholinergic receptor, muscarinic 3 0.0225517
CTNND1 catenin (cadherin-associated protein), delta 1 0.0223771
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0218986
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.0217315
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0216901
CREBBP CREB binding protein 0.021647
AMOTL1 angiomotin like 1 0.0216017
WAPL WAPL cohesin release factor 0.0211194
CADM2 cell adhesion molecule 2 0.0210647
PLEC plectin 0.0210302
TULP4 tubby like protein 4 0.0208969
LRAT lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) 0.0204618
FRMD4A FERM domain containing 4A 0.0204447
PARP12 poly (ADP-ribose) polymerase family, member 12 0.0203173
SMAD3 SMAD family member 3 0.0202798
EGR1 early growth response 1 0.0202492
ERC2 ELKS/RAB6-interacting/CAST family member 2 0.0200639
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.020043
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase 0.0200262
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0199994
MTAP methylthioadenosine phosphorylase 0.0198916
DNM3 dynamin 3 0.0198868
ZNFX1 zinc finger, NFX1-type containing 1 0.0198646
IFITM3 interferon induced transmembrane protein 3 0.0198541
OGA O-GlcNAcase 0.0197989
LRRC23 leucine rich repeat containing 23 0.0197635
KIF5B kinesin family member 5B 0.0197374
SOX10 SRY (sex determining region Y)-box 10 0.0197054
BAZ1B bromodomain adjacent to zinc finger domain, 1B 0.0195788
GMDS GDP-mannose 4,6-dehydratase 0.0195651
CYB5R3 cytochrome b5 reductase 3 0.0195372
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0195087
KYNU kynureninase 0.0194479
FBXO11 F-box protein 11 0.0191199
RPL31 ribosomal protein L31 0.0190199
PARD3B par-3 family cell polarity regulator beta 0.018999
LOC112694756 uncharaterized LOC112694756 0.018994
DHX40 DEAH (Asp-Glu-Ala-His) box polypeptide 40 0.0188816
LOC102724023 ES1 protein homolog, mitochondrial 0.0188606

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.140472
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.132292
FN1 fibronectin 1 -0.0983914
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0800757
FMN1 formin 1 -0.0620683
SPAG9 sperm associated antigen 9 -0.0574211
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0544524
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0537708
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -0.0499975
CHD1 chromodomain helicase DNA binding protein 1 -0.0493992
GOLGA4 golgin A4 -0.0488857
ZFAND3 zinc finger, AN1-type domain 3 -0.0474675
VIM vimentin -0.0445787
LSAMP limbic system-associated membrane protein -0.0441166
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0431651
NAMPT nicotinamide phosphoribosyltransferase -0.0428922
CSDE1 cold shock domain containing E1, RNA-binding -0.0425167
CANX calnexin -0.0418858
PTTG1IP pituitary tumor-transforming 1 interacting protein -0.0403351
TXNRD1 thioredoxin reductase 1 -0.0401953
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -0.0385101
ANKRD28 ankyrin repeat domain 28 -0.0378888
PMEL premelanosome protein -0.036929
RPL23 ribosomal protein L23 -0.0364324
RHOA ras homolog family member A -0.0362064
SBF2 SET binding factor 2 -0.0361299
TENM1 teneurin transmembrane protein 1 -0.0359641
ELF2 E74-like factor 2 (ets domain transcription factor) -0.0345422
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0345399
TRIM33 tripartite motif containing 33 -0.0344199
SFTPA2 surfactant protein A2 -0.0338739
CENPF centromere protein F, 350/400kDa -0.0338158
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0323747
ELL2 elongation factor, RNA polymerase II, 2 -0.0316497
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 -0.0316207
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0316105
ZFAND6 zinc finger, AN1-type domain 6 -0.0315809
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0309445
STAG2 stromal antigen 2 -0.0308558
CLIC4 chloride intracellular channel 4 -0.0308346
LCORL ligand dependent nuclear receptor corepressor-like -0.0307706
RNF145 ring finger protein 145 -0.030762
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0305902
KLF6 Kruppel-like factor 6 -0.029966
NPEPPS aminopeptidase puromycin sensitive -0.0297709
BACE2 beta-site APP-cleaving enzyme 2 -0.0291536
OLA1 Obg-like ATPase 1 -0.0290516
TSC22D2 TSC22 domain family, member 2 -0.029015
RAB1A RAB1A, member RAS oncogene family -0.0287023
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 -0.0284807
KPNA4 karyopherin alpha 4 (importin alpha 3) -0.0284149
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0280234
PDIA3 protein disulfide isomerase family A, member 3 -0.0280006
UBC ubiquitin C -0.0278446
SETD5 SET domain containing 5 -0.0277294
EMP1 epithelial membrane protein 1 -0.027471
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0274384
GSK3B glycogen synthase kinase 3 beta -0.0270544
ANKRD1 ankyrin repeat domain 1 (cardiac muscle) -0.0268645
SLC39A11 solute carrier family 39, member 11 -0.0268012
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0266882
RAB7A RAB7A, member RAS oncogene family -0.0265252
NGLY1 N-glycanase 1 -0.0264781
MSN moesin -0.0264728
CLTC clathrin, heavy chain (Hc) -0.0262732
WDR36 WD repeat domain 36 -0.0261789
TPD52 tumor protein D52 -0.026142
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) -0.0260815
KLHL24 kelch-like family member 24 -0.0260387
MBNL1 muscleblind-like splicing regulator 1 -0.0259088
UBA6 ubiquitin-like modifier activating enzyme 6 -0.0258917
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0256446
RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 -0.0256234
YEATS2 YEATS domain containing 2 -0.0254756
PUM2 pumilio RNA-binding family member 2 -0.0254617
EYA1 EYA transcriptional coactivator and phosphatase 1 -0.0253632
SNX9 sorting nexin 9 -0.0253415
CALU calumenin -0.025109
ANLN anillin, actin binding protein -0.0250969
CUL3 cullin 3 -0.0250891
DSCAM Down syndrome cell adhesion molecule -0.024997
RAD21 RAD21 homolog (S. pombe) -0.0247738
FXR1 fragile X mental retardation, autosomal homolog 1 -0.0247646
MT1X metallothionein 1X -0.0247058
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0245522
JMJD1C jumonji domain containing 1C -0.024534
ZNF292 zinc finger protein 292 -0.0242667
GULP1 GULP, engulfment adaptor PTB domain containing 1 -0.0242484
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0241513
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A -0.0241187
KAZN kazrin, periplakin interacting protein -0.0238075
CSNK1E casein kinase 1, epsilon -0.02363
SCARB2 scavenger receptor class B, member 2 -0.0234403
GLG1 golgi glycoprotein 1 -0.0234261
SEPTIN7 septin 7 -0.0233649
RPS23 ribosomal protein S23 -0.0231772
AKAP10 A kinase (PRKA) anchor protein 10 -0.0231374
KMT2E lysine (K)-specific methyltransferase 2E -0.022959
QKI QKI, KH domain containing, RNA binding -0.0229345
CLIP4 CAP-GLY domain containing linker protein family, member 4 -0.0229205