SC-1 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description A immortal mouse embryo-derived cell line cell that has the characteristics: Embryonal cell line derived from wild mouse. Sensitive to leukemia viruses. (Cell Line Ontology, CLO_0050606)
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Genes

30 genes with high or low copy number in SC-1 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LINC00410 long intergenic non-protein coding RNA 410 2.36889
LINC00379 long intergenic non-protein coding RNA 379 2.30944
MIR19B1 microRNA 19b-1 2.283
MIR17HG miR-17-92 cluster host gene 2.283
GPC5 glypican 5 2.26395
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 2.12225
SERPINB8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 2.12225
HMSD histocompatibility (minor) serpin domain containing 2.12225
SERPINB10 serpin peptidase inhibitor, clade B (ovalbumin), member 10 2.12225
DSEL dermatan sulfate epimerase-like 2.11167
LOC643542 uncharacterized LOC643542 2.11167
CDH7 cadherin 7, type 2 2.11167
CDH19 cadherin 19, type 2 2.11167
LINC00305 long intergenic non-protein coding RNA 305 2.10992
SERPINB7 serpin peptidase inhibitor, clade B (ovalbumin), member 7 2.10992
LOC284294 uncharacterized LOC284294 2.10992
LOC400654 2.10992
MIR5011 microRNA 5011 2.10177
VPS4B vacuolar protein sorting 4 homolog B (S. cerevisiae) 2.09431
BCL2 B-cell CLL/lymphoma 2 2.09431
SERPINB3 serpin peptidase inhibitor, clade B (ovalbumin), member 3 2.09431
SERPINB5 serpin peptidase inhibitor, clade B (ovalbumin), member 5 2.09431
SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4 2.09431
KDSR 3-ketodihydrosphingosine reductase 2.09431
SERPINB11 serpin peptidase inhibitor, clade B (ovalbumin), member 11 (gene/pseudogene) 2.09431
SERPINB13 serpin peptidase inhibitor, clade B (ovalbumin), member 13 2.09431
SERPINB12 serpin peptidase inhibitor, clade B (ovalbumin), member 12 2.09431
LINC00559 long intergenic non-protein coding RNA 559 2.08712
MIR622 microRNA 622 2.08334

low copy number

Symbol Name Standardized Value
HERC2P3 hect domain and RLD 2 pseudogene 3 -2.84875