SCC-9 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: squamous cell carcinoma (Cell Line Ontology, CLO_0008969)
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Genes

81 genes with high or low copy number in SCC-9 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LINC00381 long intergenic non-protein coding RNA 381 2.93899
OR2S2 olfactory receptor, family 2, subfamily S, member 2 (gene/pseudogene) 2.93899
CLTA clathrin, light chain A 2.93899
LINC00347 long intergenic non-protein coding RNA 347 2.93899
CCIN calicin 2.93899
GLIPR2 GLI pathogenesis-related 2 2.93899
NPR2 natriuretic peptide receptor 2 2.76305
CREB3 cAMP responsive element binding protein 3 2.76305
TLN1 talin 1 2.76305
TMEM8B transmembrane protein 8B 2.76305
UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) 2.76305
COMMD6 COMM domain containing 6 2.76305
TESK1 testis-specific kinase 1 2.76305
CA9 carbonic anhydrase IX 2.76305
MELK maternal embryonic leucine zipper kinase 2.76305
SPAG8 sperm associated antigen 8 2.76305
CD72 CD72 molecule 2.76305
LINC00950 long intergenic non-protein coding RNA 950 2.76305
HINT2 histidine triad nucleotide binding protein 2 2.76305
LMO7 LIM domain 7 2.76305
FAM221B family with sequence similarity 221, member B 2.76305
TPM2 tropomyosin 2 (beta) 2.76305
MIR4667 microRNA 4667 2.76305
RNF38 ring finger protein 38 2.76305
GBA2 glucosidase, beta (bile acid) 2 2.76305
RECK reversion-inducing-cysteine-rich protein with kazal motifs 2.76305
HRCT1 histidine rich carboxyl terminus 1 2.76305
RGP1 RGP1 retrograde golgi transport homolog (S. cerevisiae) 2.76305
SIT1 signaling threshold regulating transmembrane adaptor 1 2.76305
OR13J1 olfactory receptor, family 13, subfamily J, member 1 2.76305
FAM166B family with sequence similarity 166, member B 2.76305
RUSC2 RUN and SH3 domain containing 2 2.76305
GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2.76305
MSMP microseminoprotein, prostate associated 2.76305
KTN1-AS1 KTN1 antisense RNA 1 2.64759
CTAGE11P CTAGE family, member 11, pseudogene 2.64759
KIAA1161 KIAA1161 2.64759
RPL13AP3 ribosomal protein L13a pseudogene 3 2.64759
NUDT2 nudix (nucleoside diphosphate linked moiety X)-type motif 2 2.64759
KIAA1045 KIAA1045 2.64759
KTN1 kinectin 1 (kinesin receptor) 2.64759
ATG14 autophagy related 14 2.64759
ATP8B5P ATPase, class I, type 8B, member 5, pseudogene 2.64759
LINC00520 long intergenic non-protein coding RNA 520 2.64759
FANCG Fanconi anemia, complementation group G 2.64759
KLF12 Kruppel-like factor 12 2.64759
CCDC107 coiled-coil domain containing 107 2.64759
PIGO phosphatidylinositol glycan anchor biosynthesis, class O 2.64759
KIF24 kinesin family member 24 2.64759
TBPL2 TATA box binding protein like 2 2.64759
RMRP RNA component of mitochondrial RNA processing endoribonuclease 2.64759
FAM205BP transmembrane protein C9orf144B pseudogene 2.64759
C9ORF131 chromosome 9 open reading frame 131 2.64759
FBXO34 F-box protein 34 2.64759
ARHGEF39 Rho guanine nucleotide exchange factor (GEF) 39 2.64759
DNAJB5 DnaJ (Hsp40) homolog, subfamily B, member 5 2.64759
FAM214B family with sequence similarity 214, member B 2.64759
STOML2 stomatin (EPB72)-like 2 2.64759
TBC1D4 TBC1 domain family, member 4 2.64759
VCP valosin containing protein 2.64759
DNAI1 dynein, axonemal, intermediate chain 1 2.59653
CNTFR ciliary neurotrophic factor receptor 2.59653
SIGMAR1 sigma non-opioid intracellular receptor 1 2.59653
FAM219A family with sequence similarity 219, member A 2.59653
CCL19 chemokine (C-C motif) ligand 19 2.59653
ENHO energy homeostasis associated 2.59653
CCL27 chemokine (C-C motif) ligand 27 2.59653
C9ORF24 chromosome 9 open reading frame 24 2.59653
GALT galactose-1-phosphate uridylyltransferase 2.59653
FAM205A family with sequence similarity 205, member A 2.59653
DCTN3 dynactin 3 (p22) 2.59653
ARID3C AT rich interactive domain 3C (BRIGHT-like) 2.59653
IL11RA interleukin 11 receptor, alpha 2.59653
RPP25L ribonuclease P/MRP 25kDa subunit-like 2.59653
CCL21 chemokine (C-C motif) ligand 21 2.59653
MRPS30 mitochondrial ribosomal protein S30 2.17694
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 2.16947
FGF10 fibroblast growth factor 10 2.16947
MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase 2.12703
UNC13B unc-13 homolog B (C. elegans) 2.10992

low copy number

Symbol Name Standardized Value
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3 -2.80776