SHSY5Y Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

185 genes with high or low copy number in SHSY5Y relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
MTR 5-methyltetrahydrofolate-homocysteine methyltransferase 2.78443
EXOC4 exocyst complex component 4 1.51704
ATE1 arginyltransferase 1 1.395
FGFR2 fibroblast growth factor receptor 2 1.36868

low copy number

Symbol Name Standardized Value
C22ORF46 chromosome 22 open reading frame 46 -2.48357
PHF5A PHD finger protein 5A -2.48343
TOB2 transducer of ERBB2, 2 -2.48343
TEF thyrotrophic embryonic factor -2.48286
CSDC2 cold shock domain containing C2, RNA binding -2.48286
PMM1 phosphomannomutase 1 -2.48286
POLR3H polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) -2.48245
DESI1 desumoylating isopeptidase 1 -2.48147
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 -2.48147
ACO2 aconitase 2, mitochondrial -2.48147
CHADL chondroadherin-like -2.48147
ZC3H7B zinc finger CCCH-type containing 7B -2.48074
APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C -2.3058
NHP2L1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) -2.30097
APOBEC3D apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D -2.29601
SNORD83B small nucleolar RNA, C/D box 83B -2.29396
RNU86 RNA, U86 small nucleolar -2.29396
SNORD83A small nucleolar RNA, C/D box 83A -2.29396
SNORD43 small nucleolar RNA, C/D box 43 -2.29396
RANGAP1 Ran GTPase activating protein 1 -2.29377
L3MBTL2 l(3)mbt-like 2 (Drosophila) -2.29365
ATF4 activating transcription factor 4 -2.29341
RPS19BP1 ribosomal protein S19 binding protein 1 -2.29341
PTP4A3 protein tyrosine phosphatase type IVA, member 3 -2.27438
MIR548Y microRNA 548y -2.25795
LOC400927 TPTE and PTEN homologous inositol lipid phosphatase pseudogene -2.24748
CBX6 chromobox homolog 6 -2.24722
DMC1 DNA meiotic recombinase 1 -2.24654
KDELR3 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 -2.24649
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 -2.24539
SNORD127 small nucleolar RNA, C/D box 127 -2.23839
MIR33A microRNA 33a -2.22128
SEPT3 septin 3 -2.22022
WBP2NL WBP2 N-terminal like -2.21992
CENPM centromere protein M -2.21974
LINC00634 long intergenic non-protein coding RNA 634 -2.21956
SHISA8 shisa family member 8 -2.2187
SREBF2 sterol regulatory element binding transcription factor 2 -2.21833
STAU2 staufen double-stranded RNA binding protein 2 -2.21006
SLC9A9 solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 -2.20314
ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 -2.20312
SEC23A Sec23 homolog A (S. cerevisiae) -2.20026
GEMIN2 gem (nuclear organelle) associated protein 2 -2.20024
PNN pinin, desmosome associated protein -2.20011
SLC25A21-AS1 SLC25A21 antisense RNA 1 -2.19751
PAX9 paired box 9 -2.19745
CCDC148 coiled-coil domain containing 148 -2.19659
CBY1 chibby homolog 1 (Drosophila) -2.16878
FAM227A family with sequence similarity 227, member A -2.16878
TOMM22 translocase of outer mitochondrial membrane 22 homolog (yeast) -2.1686
JOSD1 Josephin domain containing 1 -2.1686
APOBEC3F apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F -2.16777
APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G -2.16777
CBX7 chromobox homolog 7 -2.16756
CCDC134 coiled-coil domain containing 134 -2.16699
DNAJB7 DnaJ (Hsp40) homolog, subfamily B, member 7 -2.16635
ST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) -2.166
MIR4766 microRNA 4766 -2.166
XPNPEP3 X-prolyl aminopeptidase 3, mitochondrial -2.1659
SLC25A17 solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 -2.16575
ENTHD1 ENTH domain containing 1 -2.16472
SSTR1 somatostatin receptor 1 -2.14593
CLEC14A C-type lectin domain family 14, member A -2.14593
RPL10L ribosomal protein L10-like -2.144
LOC100130899 uncharacterized LOC100130899 -2.13806
APOBEC3H apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H -2.13025
MROH5 maestro heat-like repeat family member 5 -2.12907
MAFF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F -2.12769
CSNK1E casein kinase 1, epsilon -2.12733
TMEM184B transmembrane protein 184B -2.12733
SLC16A8 solute carrier family 16 (monocarboxylate transporter), member 8 -2.12727
C22ORF23 chromosome 22 open reading frame 23 -2.12698
POLR2F polymerase (RNA) II (DNA directed) polypeptide F -2.12687
MICALL1 MICAL-like 1 -2.12614
DNAL4 dynein, axonemal, light chain 4 -2.12573
NPTXR neuronal pentraxin receptor -2.12573
BAIAP2L2 BAI1-associated protein 2-like 2 -2.12566
SUN2 Sad1 and UNC84 domain containing 2 -2.12545
FOXA1 forkhead box A1 -2.10478
FAM109B family with sequence similarity 109, member B -2.10412
NAGA N-acetylgalactosaminidase, alpha- -2.10412
SMDT1 single-pass membrane protein with aspartate-rich tail 1 -2.10412
CD59 CD59 molecule, complement regulatory protein -2.09288
MIA2 melanoma inhibitory activity 2 -2.09096
LOC100288846 uncharacterized LOC100288846 -2.09095
TRAPPC6B trafficking protein particle complex 6B -2.09092
MIR4503 microRNA 4503 -2.0892
TAB1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 -2.06798
LOC100506472 uncharacterized LOC100506472 -2.06798
MIEF1 mitochondrial elongation factor 1 -2.06787
MGAT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase -2.06753
RPL3 ribosomal protein L3 -2.06617
RBX1 ring-box 1, E3 ubiquitin protein ligase -2.06556
TAS2R43 taste receptor, type 2, member 43 -2.0432
ADSL adenylosuccinate lyase -2.04135
SOX10 SRY (sex determining region Y)-box 10 -2.03189
MIR4534 microRNA 4534 -2.03189
PICK1 protein interacting with PRKCA 1 -2.03187
FKBP3 FK506 binding protein 3, 25kDa -2.02537
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6 -2.02115
CYP2D7 cytochrome P450, family 2, subfamily D, polypeptide 7 (gene/pseudogene) -2.02115
NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa -2.0125
TNFRSF13C tumor necrosis factor receptor superfamily, member 13C -2.0123
PRPF39 pre-mRNA processing factor 39 -2.01226
OGFRP1 opioid growth factor receptor pseudogene 1 -2.0099
TCF20 transcription factor 20 (AR1) -2.00968
FAT2 FAT atypical cadherin 2 -2.00721
FSCB fibrous sheath CABYR binding protein -2.00563
CTAGE5 CTAGE family, member 5 -2.00252
OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 -1.99623
C14ORF28 chromosome 14 open reading frame 28 -1.9913
KLHL28 kelch-like family member 28 -1.99015
FANCM Fanconi anemia, complementation group M -1.98825
GTPBP1 GTP binding protein 1 -1.98313
CACNA1I calcium channel, voltage-dependent, T type, alpha 1I subunit -1.98145
MIR1281 microRNA 1281 -1.98103
MKL1 megakaryoblastic leukemia (translocation) 1 -1.97994
GRAP2 GRB2-related adaptor protein 2 -1.97904
RNU12 RNA, U12 small nuclear -1.96996
ATP5L2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2 -1.96981
CYB5R3 cytochrome b5 reductase 3 -1.96981
A4GALT alpha 1,4-galactosyltransferase -1.96932
POLDIP3 polymerase (DNA-directed), delta interacting protein 3 -1.96537
FAM179B family with sequence similarity 179, member B -1.93675
NDUFA6-AS1 NDUFA6 antisense RNA 1 (head to head) -1.9352
LEPR leptin receptor -1.92896
LEPROT leptin receptor overlapping transcript -1.92896
MIS18BP1 MIS18 binding protein 1 -1.92789
FBXO33 F-box protein 33 -1.92775
MEI1 meiosis inhibitor 1 -1.91079
PDGFB platelet-derived growth factor beta polypeptide -1.91078
SACK1F scaffolding CK1 anchoring protein F -1.90962
MCHR1 melanin-concentrating hormone receptor 1 -1.90918
PROSER2-AS1 PROSER2 antisense RNA 1 -1.90799
ARFGAP3 ADP-ribosylation factor GTPase activating protein 3 -1.89986
LINC00648 long intergenic non-protein coding RNA 648 -1.88976
KCNJ4 potassium channel, inwardly rectifying subfamily J, member 4 -1.88331
MIPOL1 mirror-image polydactyly 1 -1.85804
CLDN14 claudin 14 -1.84093
PACSIN2 protein kinase C and casein kinase substrate in neurons 2 -1.82971
FLNB filamin B, beta -1.82556
TTLL1 tubulin tyrosine ligase-like family member 1 -1.82197
SYNGR1 synaptogyrin 1 -1.79676
PABPC4L poly(A) binding protein, cytoplasmic 4-like -1.7825
MCAT malonyl CoA:ACP acyltransferase (mitochondrial) -1.77936
BIK BCL2-interacting killer (apoptosis-inducing) -1.77933
TSPO translocator protein (18kDa) -1.77918
MIR548I3 microRNA 548i-3 -1.7753
PRH1-PRR4 PRH1-PRR4 readthrough -1.76674
SERHL serine hydrolase-like (pseudogene) -1.76459
RRP7A ribosomal RNA processing 7 homolog A (S. cerevisiae) -1.76144
TACR1 tachykinin receptor 1 -1.75228
IRAK2 interleukin-1 receptor-associated kinase 2 -1.73633
TTLL12 tubulin tyrosine ligase-like family member 12 -1.73343
RPTOR regulatory associated protein of MTOR, complex 1 -1.71795
TNRC6B trinucleotide repeat containing 6B -1.71106
LINC00639 long intergenic non-protein coding RNA 639 -1.70664
NBPF15 neuroblastoma breakpoint family, member 15 -1.70518
EFCAB6-AS1 EFCAB6 antisense RNA 1 -1.69992
EP300 E1A binding protein p300 -1.687
ARHGEF3 Rho guanine nucleotide exchange factor (GEF) 3 -1.68143
LRFN5 leucine rich repeat and fibronectin type III domain containing 5 -1.6702
MPPED1 metallophosphoesterase domain containing 1 -1.62636
PNPLA5 patatin-like phospholipase domain containing 5 -1.61198
EDNRB endothelin receptor type B -1.60142
PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent) -1.5963
NFAM1 NFAT activating protein with ITAM motif 1 -1.58313
SULT4A1 sulfotransferase family 4A, member 1 -1.56932
OR51B5 olfactory receptor, family 51, subfamily B, member 5 -1.5668
PPM1L protein phosphatase, Mg2+/Mn2+ dependent, 1L -1.5653
RRP7BP ribosomal RNA processing 7 homolog B (S. cerevisiae), pseudogene -1.54594
CCND2 cyclin D2 -1.51496
GMDS GDP-mannose 4,6-dehydratase -1.49712
SERHL2 serine hydrolase-like 2 -1.48859
OGFOD3 2-oxoglutarate and iron-dependent oxygenase domain containing 3 -1.47394
EFCAB6 EF-hand calcium binding domain 6 -1.45868
SCUBE1 signal peptide, CUB domain, EGF-like 1 -1.45792
SOX5 SRY (sex determining region Y)-box 5 -1.43985
RNF219-AS1 RNF219 antisense RNA 1 -1.385
IGLL3P immunoglobulin lambda-like polypeptide 3, pseudogene -1.36457
LOC284294 uncharacterized LOC284294 -1.36065