SJSA-1 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

127 genes with high or low copy number in SJSA-1 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
USP15 ubiquitin specific peptidase 15 4.51153
RBM19 RNA binding motif protein 19 4.51153
TFDP1 transcription factor Dp-1 3.12177
KIAA1033 KIAA1033 3.12177
LUM lumican 3.12177
APPL2 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 3.12177
EPYC epiphycan 3.12177
KERA keratocan 3.12177
UBE3B ubiquitin protein ligase E3B 3.12177
LINC00552 long intergenic non-protein coding RNA 552 3.12177
GRK1 G protein-coupled receptor kinase 1 3.12177
CUX2 cut-like homeobox 2 3.12177
RIMBP2 RIMS binding protein 2 3.12177
CCER1 coiled-coil glutamate-rich protein 1 3.12177
KCTD10 potassium channel tetramerization domain containing 10 3.12177
TMEM255B transmembrane protein 255B 3.12177
ATP4B ATPase, H+/K+ exchanging, beta polypeptide 3.12177
ZNF605 zinc finger protein 605 3.12177
SELPLG selectin P ligand 2.93899
ARHGEF7 Rho guanine nucleotide exchange factor (GEF) 7 2.93899
ANKRD10 ankyrin repeat domain 10 2.93899
LINC00346 long intergenic non-protein coding RNA 346 2.93899
TEX29 testis expressed 29 2.93899
CORO1C coronin, actin binding protein, 1C 2.93899
ING1 inhibitor of growth family, member 1 2.93899
LTA4H leukotriene A4 hydrolase 2.93899
BRI3BP BRI3 binding protein 2.93899
TMEM119 transmembrane protein 119 2.93899
HAL histidine ammonia-lyase 2.93899
KRT1 keratin 1, type II 2.76305
KRT77 keratin 77, type II 2.76305
KRT76 keratin 76, type II 2.76305
MIR548AS microRNA 548as 2.76305
BIVM basic, immunoglobulin-like variable motif containing 2.76305
KRT79 keratin 79, type II 2.76305
SLC10A2 solute carrier family 10 (sodium/bile acid cotransporter), member 2 2.76305
KRT3 keratin 3, type II 2.76305
KRT4 keratin 4, type II 2.76305
CARKD carbohydrate kinase domain containing 2.76305
CARS2 cysteinyl-tRNA synthetase 2, mitochondrial (putative) 2.76305
ERCC5 excision repair cross-complementation group 5 2.76305
METTL21EP methyltransferase like 21E, pseudogene 2.76305
BIVM-ERCC5 BIVM-ERCC5 readthrough 2.76305
RAB20 RAB20, member RAS oncogene family 2.64759
KDELC1 KDEL (Lys-Asp-Glu-Leu) containing 1 2.64759
TEX30 testis expressed 30 2.64759
RPSAP52 ribosomal protein SA pseudogene 52 2.64759
CCDC168 coiled-coil domain containing 168 2.64759
OR10AD1 olfactory receptor, family 10, subfamily AD, member 1 2.64759
COL4A2-AS1 COL4A2 antisense RNA 1 2.64759
MIR623 microRNA 623 2.59653
MYO16 myosin XVI 2.59653
MYO16-AS1 MYO16 antisense RNA 1 2.59653
FKSG29 FKSG29 2.59653
ASB8 ankyrin repeat and SOCS box containing 8 2.59653
PFKM phosphofructokinase, muscle 2.59653
MIR4306 microRNA 4306 2.59653
HMGA2 high mobility group AT-hook 2 2.59653
SENP1 SUMO1/sentrin specific peptidase 1 2.49065
INHBC inhibin, beta C 2.49065
UGGT2 UDP-glucose glycoprotein glucosyltransferase 2 2.49065
TM9SF2 transmembrane 9 superfamily member 2 2.49065
GLI1 GLI family zinc finger 1 2.44392
ARHGAP9 Rho GTPase activating protein 9 2.44392
INHBE inhibin, beta E 2.44392
MARS methionyl-tRNA synthetase 2.41451
IRS2 insulin receptor substrate 2 2.41451
MBD6 methyl-CpG binding domain protein 6 2.41451
DDIT3 DNA-damage-inducible transcript 3 2.41451
GPC5-AS1 GPC5 antisense RNA 1 2.41451
SLC35E3 solute carrier family 35, member E3 2.39327
XRCC6BP1 XRCC6 binding protein 1 2.39327
DCTN2 dynactin 2 (p50) 2.39327
LOC100506844 uncharacterized LOC100506844 2.36889
CPM carboxypeptidase M 2.35236
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 2.35236
LOC100130075 SUZ RNA binding domain containing 1 pseudogene 2.35236
CTDSP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 2.3178
METTL21B methyltransferase like 21B 2.3178
MIR26A2 microRNA 26a-2 2.3178
CYP27B1 cytochrome P450, family 27, subfamily B, polypeptide 1 2.30944
MARCH9 membrane-associated ring finger (C3HC4) 9 2.30944
AVIL advillin 2.30944
TSFM Ts translation elongation factor, mitochondrial 2.30944
PIP4K2C phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 2.30944
METTL1 methyltransferase like 1 2.30944
DTX3 deltex 3, E3 ubiquitin ligase 2.30944
CDK4 cyclin-dependent kinase 4 2.283
AGAP2-AS1 AGAP2 antisense RNA 1 2.283
B4GALNT1 beta-1,4-N-acetyl-galactosaminyl transferase 1 2.283
AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 2.283
SLC26A10 solute carrier family 26, member 10 2.283
ARHGEF25 Rho guanine nucleotide exchange factor (GEF) 25 2.283
TSPAN31 tetraspanin 31 2.283
GPC5 glypican 5 2.26395
SLIT2 slit homolog 2 (Drosophila) 2.12931
MIR218-1 microRNA 218-1 2.12931
SLIT2-IT1 SLIT2 intronic transcript 1 2.12931
RAB28 RAB28, member RAS oncogene family 2.12703
PCCA propionyl CoA carboxylase, alpha polypeptide 2.11344
ZIC5 Zic family member 5 2.10992
ZIC2 Zic family member 2 2.10992
MIR4509-1 microRNA 4509-1 2.10616
DOCK9 dedicator of cytokinesis 9 2.10317
GPR183 G protein-coupled receptor 183 2.10038
UBAC2 UBA domain containing 2 2.10038
FAM155A family with sequence similarity 155, member A 2.10038
UBAC2-AS1 UBAC2 antisense RNA 1 2.10038
GPR18 G protein-coupled receptor 18 2.10038
COL4A2 collagen, type IV, alpha 2 2.10038
SLC15A1 solute carrier family 15 (oligopeptide transporter), member 1 2.10038
MIR548AN microRNA 548an 2.10038
CLYBL citrate lyase beta like 2.10038
SPRY2 sprouty homolog 2 (Drosophila) 2.09431
HS6ST3 heparan sulfate 6-O-sulfotransferase 3 2.09431
R3HDM2 R3H domain containing 2 2.09073
GPC6 glypican 6 2.07851
KIF5A kinesin family member 5A 2.07776
OS9 osteosarcoma amplified 9, endoplasmic reticulum lectin 2.0731

low copy number

Symbol Name Standardized Value
NLGN3 neuroligin 3 -3.61078
IL2RG interleukin 2 receptor, gamma -3.61078
MED12 mediator complex subunit 12 -3.61078
CXORF65 chromosome X open reading frame 65 -3.61078
OR2T11 olfactory receptor, family 2, subfamily T, member 11 (gene/pseudogene) -2.78432
OR2T10 olfactory receptor, family 2, subfamily T, member 10 -2.78237
CFHR3 complement factor H-related 3 -2.76621
CFHR1 complement factor H-related 1 -2.76621