SK-CO-1 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: colorectal adenocarcinoma (colon primary) (Cell Line Ontology, CLO_0009035)
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Genes

104 genes with high or low copy number in SK-CO-1 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 3.12177
PRUNE2 prune homolog 2 (Drosophila) 3.12177
RPSAP9 ribosomal protein SA pseudogene 9 3.12177
RFK riboflavin kinase 3.12177
PCA3 prostate cancer associated 3 (non-protein coding) 3.12177
PCSK5 proprotein convertase subtilisin/kexin type 5 3.12177
FOXB2 forkhead box B2 3.12177
SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 18kDa 2.93899
VPS13A-AS1 VPS13A antisense RNA 1 2.93899
ZBTB7C zinc finger and BTB domain containing 7C 2.93899
SMAD2 SMAD family member 2 2.93899
VPS13A vacuolar protein sorting 13 homolog A (S. cerevisiae) 2.93899
LOC349160 uncharacterized LOC349160 2.59653
LUZP6 leucine zipper protein 6 2.59653
MIR490 microRNA 490 2.59653
CHRM2 cholinergic receptor, muscarinic 2 2.59653
LOC100128164 four and a half LIM domains 1 pseudogene 2.25904
GPR160 G protein-coupled receptor 160 2.25904
PRKCI protein kinase C, iota 2.25904
SEC62 SEC62 homolog (S. cerevisiae) 2.25904
SKIL SKI-like proto-oncogene 2.25904
PHC3 polyhomeotic homolog 3 (Drosophila) 2.24845
SAMD7 sterile alpha motif domain containing 7 2.24845
LRRC34 leucine rich repeat containing 34 2.24139
LRRIQ4 leucine-rich repeats and IQ motif containing 4 2.24139
LRRC31 leucine rich repeat containing 31 2.24139
TERC telomerase RNA component 2.2355
ACTRT3 actin-related protein T3 2.2355
MYNN myoneurin 2.2355
MIR3148 microRNA 3148 2.15316
KIF13B kinesin family member 13B 2.15316
DUSP4 dual specificity phosphatase 4 2.15316
LOC391322 D-dopachrome tautomerase-like 2.1494
GSTT1 glutathione S-transferase theta 1 2.1494
GSTTP2 glutathione S-transferase theta pseudogene 2 2.1494
SMAD7 SMAD family member 7 2.14116
LEPROTL1 leptin receptor overlapping transcript-like 1 2.14116
CTIF CBP80/20-dependent translation initiation factor 2.14116
MIR548O2 microRNA 548o-2 2.14116
DCTN6 dynactin 6 2.14116
MIR4743 microRNA 4743 2.14116
LINC00589 long intergenic non-protein coding RNA 589 2.14116
MBOAT4 membrane bound O-acyltransferase domain containing 4 2.14116
MIR4744 microRNA 4744 2.12703
RBPMS RNA binding protein with multiple splicing 2.12703
GUCD1 guanylyl cyclase domain containing 1 2.12703
DYM dymeclin 2.12703
SPECC1L sperm antigen with calponin homology and coiled-coil domains 1-like 2.12225
UPB1 ureidopropionase, beta 2.12225
ADORA2A adenosine A2a receptor 2.12225
BCRP3 breakpoint cluster region pseudogene 3 2.12225
GGT1 gamma-glutamyltransferase 1 2.12225
ADORA2A-AS1 ADORA2A antisense RNA 1 2.12225
POM121L9P POM121 transmembrane nucleoporin-like 9, pseudogene 2.12225
POM121L10P POM121 transmembrane nucleoporin-like 10, pseudogene 2.12225
GSTTP1 glutathione S-transferase theta pseudogene 1 2.11599
MIR650 microRNA 650 2.11468
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 2.11435
ZNF70 zinc finger protein 70 2.11344
C22ORF15 chromosome 22 open reading frame 15 2.11344
GUSBP11 glucuronidase, beta pseudogene 11 2.11344
RGL4 ral guanine nucleotide dissociation stimulator-like 4 2.11344
VPREB3 pre-B lymphocyte 3 2.11344
CHCHD10 coiled-coil-helix-coiled-coil-helix domain containing 10 2.11344
MMP11 matrix metallopeptidase 11 2.11344
GGT5 gamma-glutamyltransferase 5 2.11167
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor) 2.11167
CES5AP1 carboxylesterase 5A pseudogene 1 2.11167
LOC388882 uncharacterized LOC388882 2.11167
DERL3 derlin 3 2.11167
GSTT2 glutathione S-transferase theta 2 (gene/pseudogene) 2.11167
CABIN1 calcineurin binding protein 1 2.11167
DDT D-dopachrome tautomerase 2.11167
IGLL1 immunoglobulin lambda-like polypeptide 1 2.11167
DDTL D-dopachrome tautomerase-like 2.11167
SLC2A11 solute carrier family 2 (facilitated glucose transporter), member 11 2.11167
ZDHHC8P1 zinc finger, DHHC-type containing 8 pseudogene 1 2.11167
SUSD2 sushi domain containing 2 2.11167
TOP1P2 topoisomerase (DNA) I pseudogene 2 2.10992
PIWIL3 piwi-like RNA-mediated gene silencing 3 2.10992
SGSM1 small G protein signaling modulator 1 2.10992
KIAA1671 KIAA1671 2.10992
TMEM211 transmembrane protein 211 2.10992
LOC100128531 uncharacterized LOC100128531 2.10992
IGLL5 immunoglobulin lambda-like polypeptide 5 2.0989
GNAZ guanine nucleotide binding protein (G protein), alpha z polypeptide 2.09628
FBXW4P1 F-box and WD repeat domain containing 4 pseudogene 1 2.09628
RSPH14 radial spoke head 14 homolog (Chlamydomonas) 2.09628
RAB36 RAB36, member RAS oncogene family 2.09529
BCR breakpoint cluster region 2.0722
OR4M1 olfactory receptor, family 4, subfamily M, member 1 2.06989
OR4Q3 olfactory receptor, family 4, subfamily Q, member 3 2.06989
OR4K5 olfactory receptor, family 4, subfamily K, member 5 2.06626
OR4K1 olfactory receptor, family 4, subfamily K, member 1 2.06626
OR4K2 olfactory receptor, family 4, subfamily K, member 2 2.06626
OR4N2 olfactory receptor, family 4, subfamily N, member 2 2.06626
EGFEM1P EGF-like and EMI domain containing 1, pseudogene 2.06105
MECOM MDS1 and EVI1 complex locus 2.06061
LINC00226 long intergenic non-protein coding RNA 226 2.04712

low copy number

Symbol Name Standardized Value
SIL1 SIL1 nucleotide exchange factor -3.56449
APOBEC3A_B APOBEC3A and APOBEC3B deletion hybrid -3.53061
APOBEC3B apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B -3.53061
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -3.486
DEFA10P defensin, alpha 10 pseudogene -2.84592