SK-GT-2 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from -666 (Catalogue of Somatic Mutations In Cancer)
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Genes

129 genes with high or low copy number in SK-GT-2 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
ABCC6P2 ATP-binding cassette, sub-family C, member 6 pseudogene 2 4.51153
NDE1 nudE neurodevelopment protein 1 3.12177
TPSB2 tryptase beta 2 (gene/pseudogene) 3.12177
TMEM204 transmembrane protein 204 3.12177
MPV17L MPV17 mitochondrial membrane protein-like 3.12177
C1QTNF8 C1q and tumor necrosis factor related protein 8 3.12177
LMF1 lipase maturation factor 1 3.12177
C16ORF45 chromosome 16 open reading frame 45 3.12177
TPSG1 tryptase gamma 1 3.12177
DCLK1 doublecortin-like kinase 1 3.12177
MYH11 myosin, heavy chain 11, smooth muscle 3.12177
TELO2 telomere maintenance 2 3.12177
PTX4 pentraxin 4, long 3.12177
SOX8 SRY (sex determining region Y)-box 8 3.12177
MIR484 microRNA 484 3.12177
CCDC154 coiled-coil domain containing 154 3.12177
BAIAP3 BAI1-associated protein 3 3.12177
IFT140 intraflagellar transport 140 3.12177
LINC00457 long intergenic non-protein coding RNA 457 3.12177
NBEA neurobeachin 3.12177
MIR548F5 microRNA 548f-5 3.12177
FOPNL FGFR1OP N-terminal like 3.12177
UNKL unkempt family zinc finger-like 3.12177
CACNA1H calcium channel, voltage-dependent, T type, alpha 1H subunit 3.12177
TPSD1 tryptase delta 1 3.12177
SOHLH2 spermatogenesis and oogenesis specific basic helix-loop-helix 2 3.12177
TPSAB1 tryptase alpha/beta 1 3.12177
KIAA0430 KIAA0430 3.12177
SSTR5-AS1 SSTR5 antisense RNA 1 3.12177
SSTR5 somatostatin receptor 5 3.12177
GNPTG N-acetylglucosamine-1-phosphate transferase, gamma subunit 3.12177
C16ORF91 chromosome 16 open reading frame 91 3.12177
TSR3 TSR3, 20S rRNA accumulation, homolog (S. cerevisiae) 3.12177
CLCN7 chloride channel, voltage-sensitive 7 3.12177
UBE2I ubiquitin-conjugating enzyme E2I 3.12177
UTP6 UTP6, small subunit (SSU) processome component, homolog (yeast) 2.93899
COPRS coordinator of PRMT5, differentiation stimulator 2.93899
RFC3 replication factor C (activator 1) 3, 38kDa 2.76305
N4BP2L2-IT2 N4BPL2 intronic transcript 2 2.64759
MINOS1P1 mitochondrial inner membrane organizing system 1 pseudogene 1 2.64759
N4BP2L1 NEDD4 binding protein 2-like 1 2.64759
N4BP2L2 NEDD4 binding protein 2-like 2 2.64759
BRCA2 breast cancer 2, early onset 2.64759
LINC00423 long intergenic non-protein coding RNA 423 2.59653
KL klotho 2.59653
PDS5B PDS5 cohesin associated factor B 2.59653
STARD13-AS STARD13 antisense RNA 2.59653
STARD13 StAR-related lipid transfer (START) domain containing 13 2.59653
PHGDH phosphoglycerate dehydrogenase 2.49065
DZIP1 DAZ interacting zinc finger protein 1 2.49065
UGGT2 UDP-glucose glycoprotein glucosyltransferase 2 2.49065
CLDN10 claudin 10 2.49065
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 2.49065
SOX21 SRY (sex determining region Y)-box 21 2.49065
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 2.49065
HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial) 2.49065
SNORD124 small nucleolar RNA, C/D box 124 2.24845
CSF3 colony stimulating factor 3 (granulocyte) 2.24845
MED24 mediator complex subunit 24 2.24845
PSMD3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 2.24845
GSDMA gasdermin A 2.23324
LRRC3C leucine rich repeat containing 3C 2.23324
ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2.23078
ZPBP2 zona pellucida binding protein 2 2.22291
PPP1R1B protein phosphatase 1, regulatory (inhibitor) subunit 1B 2.21258
STARD3 StAR-related lipid transfer (START) domain containing 3 2.21096
PNMT phenylethanolamine N-methyltransferase 2.20309
ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 2.20309
TCAP titin-cap 2.20309
MIEN1 migration and invasion enhancer 1 2.20053
EXT1 exostosin glycosyltransferase 1 2.20053
GRB7 growth factor receptor-bound protein 7 2.20053
PGAP3 post-GPI attachment to proteins 3 2.20053
MIR4728 microRNA 4728 2.20053
ERBB2 erb-b2 receptor tyrosine kinase 2 2.20053
IKZF3 IKAROS family zinc finger 3 (Aiolos) 2.19863
SAMD12 sterile alpha motif domain containing 12 2.18778
PDXDC1 pyridoxal-dependent decarboxylase domain containing 1 2.15465
MIR3179-3 microRNA 3179-3 2.15465
NOMO1 NODAL modulator 1 2.15465
MIR3180-3 microRNA 3180-3 2.14626
CCDC169 coiled-coil domain containing 169 2.14116
CRAMP1L Crm, cramped-like (Drosophila) 2.14116
SPG20 spastic paraplegia 20 (Troyer syndrome) 2.14116
CCDC169-SOHLH2 CCDC169-SOHLH2 readthrough 2.14116
CLDN10-AS1 CLDN10 antisense RNA 1 2.09431
HS6ST3 heparan sulfate 6-O-sulfotransferase 3 2.09431
AUTS2 autism susceptibility candidate 2 2.09205
TGDS TDP-glucose 4,6-dehydratase 2.09073
DCT dopachrome tautomerase 2.09073
GPR180 G protein-coupled receptor 180 2.09073
GPC6 glypican 6 2.07851
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
POU5F1B POU class 5 homeobox 1B 2.05836
IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) 2.04842
IGHE immunoglobulin heavy constant epsilon 2.04816
IGHD immunoglobulin heavy constant delta 2.04803
ADAM6 ADAM metallopeptidase domain 6 (pseudogene) 2.04767
KIAA0125 KIAA0125 2.04731
LINC00226 long intergenic non-protein coding RNA 226 2.04712
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
PCCA-AS1 PCCA antisense RNA 1 -3.32901
GGACT gamma-glutamylamine cyclotransferase -3.15179
PCCA propionyl CoA carboxylase, alpha polypeptide -3.08009
SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 -2.92126
USP25 ubiquitin specific peptidase 25 -2.91868
MIR99A microRNA 99a -2.91612
MIRLET7C microRNA let-7c -2.91612
ANKRD20A11P ankyrin repeat domain 20 family, member A11, pseudogene -2.91612
C21ORF91 chromosome 21 open reading frame 91 -2.91612
ABCC13 ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene -2.91612
C21ORF91-OT1 C21orf91 overlapping transcript 1 -2.91612
CHODL-AS1 CHODL antisense RNA 1 -2.91612
MIR125B2 microRNA 125b-2 -2.91612
POTED POTE ankyrin domain family, member D -2.91612
HSPA13 heat shock protein 70kDa family, member 13 -2.91612
BTG3 BTG family, member 3 -2.91612
RBM11 RNA binding motif protein 11 -2.91268
SAMSN1-AS1 SAMSN1 antisense RNA 1 -2.89373
LOC388813 uncharacterized protein ENSP00000383407-like -2.89373
LINC01549 long intergenic non-protein coding RNA 1549 -2.89201
CXADR coxsackie virus and adenovirus receptor -2.89201
LIPI lipase, member I -2.88947
NRIP1 nuclear receptor interacting protein 1 -2.8792
SNORD74 small nucleolar RNA, C/D box 74 -2.86885
PSG4 pregnancy specific beta-1-glycoprotein 4 -2.75301
LOC284344 uncharacterized LOC284344 -2.74526
BTNL3 butyrophilin-like 3 -2.72661