SK-GT-4 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

86 genes with high or low copy number in SK-GT-4 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LINC00871 long intergenic non-protein coding RNA 871 2.59653
RPL10L ribosomal protein L10-like 2.59653
TRAPPC6B trafficking protein particle complex 6B 2.35236
MIA2 melanoma inhibitory activity 2 2.35236
SEC23A Sec23 homolog A (S. cerevisiae) 2.35236
EGLN3 egl-9 family hypoxia-inducible factor 3 2.35236
GEMIN2 gem (nuclear organelle) associated protein 2 2.35236
CFL2 cofilin 2 (muscle) 2.35236
PNN pinin, desmosome associated protein 2.35236
SNX6 sorting nexin 6 2.3178
HECTD1 HECT domain containing E3 ubiquitin protein ligase 1 2.3178
SPTSSA serine palmitoyltransferase, small subunit A 2.3178
LINC00639 long intergenic non-protein coding RNA 639 2.3178
FAM177A1 family with sequence similarity 177, member A1 2.3178
BAZ1A bromodomain adjacent to zinc finger domain, 1A 2.3178
EAPP E2F-associated phosphoprotein 2.3178
IGBP1P1 immunoglobulin (CD79A) binding protein 1 pseudogene 1 2.3178
SRP54 signal recognition particle 54kDa 2.3178
PSMA6 proteasome (prosome, macropain) subunit, alpha type, 6 2.30944
PPP2R3C protein phosphatase 2, regulatory subunit B'', gamma 2.30944
SSTR1 somatostatin receptor 1 2.30944
KIAA0391 KIAA0391 2.30944
CLEC14A C-type lectin domain family 14, member A 2.30944
HEATR5A HEAT repeat containing 5A 2.283
GPR33 G protein-coupled receptor 33 (gene/pseudogene) 2.283
MIR4503 microRNA 4503 2.283
FOXA1 forkhead box A1 2.283
AKAP6 A kinase (PRKA) anchor protein 6 2.283
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 2.283
DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2.283
LINC00609 long intergenic non-protein coding RNA 609 2.26395
INSM2 insulinoma-associated 2 2.26395
NUBPL nucleotide binding protein-like 2.26395
ARHGAP5 Rho GTPase activating protein 5 2.26395
BRMS1L breast cancer metastasis-suppressor 1-like 2.26395
ARHGAP5-AS1 ARHGAP5 antisense RNA 1 (head to head) 2.26395
PTCSC3 papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) 2.26395
TTC6 tetratricopeptide repeat domain 6 2.26395
RALGAPA1 Ral GTPase activating protein, alpha subunit 1 (catalytic) 2.26395
NKX2-1 NK2 homeobox 1 2.25904
PAX9 paired box 9 2.25904
MIPOL1 mirror-image polydactyly 1 2.25904
NKX2-8 NK2 homeobox 8 2.25904
SLC25A21-AS1 SLC25A21 antisense RNA 1 2.25904
MBIP MAP3K12 binding inhibitory protein 1 2.24845
SFTA3 surfactant associated 3 2.24845
SLC25A21 solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 2.2355
DPPA3 developmental pluripotency associated 3 2.22917
JRKL-AS1 JRKL antisense RNA 1 2.12225
JRKL JRK-like 2.12225
MIR1260B microRNA 1260b 2.12225
CCDC82 coiled-coil domain containing 82 2.12225
MAML2 mastermind-like 2 (Drosophila) 2.10992
MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 2.08712
CTAGE5 CTAGE family, member 5 2.07822
FBXO33 F-box protein 33 2.07822
LOC100288846 uncharacterized LOC100288846 2.07776
NPAS3 neuronal PAS domain protein 3 2.0731

low copy number

Symbol Name Standardized Value
RUNX1-IT1 RUNX1 intronic transcript 1 -3.11641
RUNX1 runt-related transcription factor 1 -3.03082
RPA4 replication protein A4, 30kDa -2.86559
OR52N5 olfactory receptor, family 52, subfamily N, member 5 -2.84224
MIR491 microRNA 491 -2.80395
SNORA30 small nucleolar RNA, H/ACA box 30 -2.79995
FOCAD focadhesin -2.7828
HACD4 3-hydroxyacyl-CoA dehydratase 4 -2.78237
DMD dystrophin -2.78077
IFNB1 interferon, beta 1, fibroblast -2.77588
IFNW1 interferon, omega 1 -2.77446
IFNA21 interferon, alpha 21 -2.77074
IFNA4 interferon, alpha 4 -2.7694
IFNA17 interferon, alpha 17 -2.76453
IFNA16 interferon, alpha 16 -2.76453
IFNA10 interferon, alpha 10 -2.75972
IFNA7 interferon, alpha 7 -2.75972
IFNA14 interferon, alpha 14 -2.75972
IFNA22P interferon, alpha 22, pseudogene -2.75555
IFNA5 interferon, alpha 5 -2.74973
KLHL9 kelch-like family member 9 -2.74526
IFNA6 interferon, alpha 6 -2.74032
IFNA13 interferon, alpha 13 -2.73798
IFNA2 interferon, alpha 2 -2.73608
OR52N1 olfactory receptor, family 52, subfamily N, member 1 -2.73524
IFNA8 interferon, alpha 8 -2.73024
IFNA1 interferon, alpha 1 -2.72828
IFNE interferon, epsilon -2.72466