SK-MES-1 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

348 genes with high or low copy number in SK-MES-1 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
KLHL23 kelch-like family member 23 4.51153
PLK2 polo-like kinase 2 4.51153
NDUFAF2 NADH dehydrogenase (ubiquinone) complex I, assembly factor 2 4.51153
PHOSPHO2-KLHL23 PHOSPHO2-KLHL23 readthrough 4.51153
HTR1A 5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled 4.51153
PHOSPHO2 phosphatase, orphan 2 4.51153
GAPT GRB2-binding adaptor protein, transmembrane 4.51153
CCDC173 coiled-coil domain containing 173 4.51153
SMIM15 small integral membrane protein 15 4.51153
RAB3C RAB3C, member RAS oncogene family 4.51153
PPIG peptidylprolyl isomerase G (cyclophilin G) 4.51153
ERICH2 glutamate-rich 2 3.12177
MECP2 methyl CpG binding protein 2 3.12177
GAB3 GRB2-associated binding protein 3 3.12177
RENBP renin binding protein 3.12177
TLK1 tousled-like kinase 1 3.12177
SMIM9 small integral membrane protein 9 3.12177
LAGE3 L antigen family, member 3 3.12177
SSB Sjogren syndrome antigen B (autoantigen La) 3.12177
MYO3B myosin IIIB 3.12177
IKBKG inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma 3.12177
CTAG1B cancer/testis antigen 1B 3.12177
DNASE1L1 deoxyribonuclease I-like 1 3.12177
FAM50A family with sequence similarity 50, member A 3.12177
GPR155 G protein-coupled receptor 155 3.12177
DKC1 dyskeratosis congenita 1, dyskerin 3.12177
SCRN3 secernin 3 3.12177
IRAK1 interleukin-1 receptor-associated kinase 1 3.12177
NAA10 N(alpha)-acetyltransferase 10, NatA catalytic subunit 3.12177
TMEM187 transmembrane protein 187 3.12177
GAD1 glutamate decarboxylase 1 (brain, 67kDa) 3.12177
UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 3.12177
CYBRD1 cytochrome b reductase 1 3.12177
SLC10A3 solute carrier family 10, member 3 3.12177
CTAG2 cancer/testis antigen 2 3.12177
CIR1 corepressor interacting with RBPJ, 1 3.12177
OPN1LW opsin 1 (cone pigments), long-wave-sensitive 3.12177
SNORA36A small nucleolar RNA, H/ACA box 36A 3.12177
MIR3202-2 microRNA 3202-2 3.12177
MPP1 membrane protein, palmitoylated 1, 55kDa 3.12177
GORASP2 golgi reassembly stacking protein 2, 55kDa 3.12177
RAB39B RAB39B, member RAS oncogene family 3.12177
GAP43 growth associated protein 43 3.12177
MIR718 microRNA 718 3.12177
MIR3202-1 microRNA 3202-1 3.12177
SP5 Sp5 transcription factor 3.12177
SP3 Sp3 transcription factor 3.12177
SP9 Sp9 transcription factor 3.12177
PLXNA3 plexin A3 3.12177
DCAF17 DDB1 and CUL4 associated factor 17 3.12177
ATP6AP1 ATPase, H+ transporting, lysosomal accessory protein 1 3.12177
UBL4A ubiquitin-like 4A 3.12177
ARHGAP4 Rho GTPase activating protein 4 3.12177
RPL10 ribosomal protein L10 3.12177
TAZ tafazzin 3.12177
METTL5 methyltransferase like 5 3.12177
ZSWIM6 zinc finger, SWIM-type containing 6 3.12177
TEX28 testis expressed 28 3.12177
FAM223B family with sequence similarity 223, member B (non-protein coding) 3.12177
VBP1 von Hippel-Lindau binding protein 1 3.12177
OLA1 Obg-like ATPase 1 3.12177
SNORA56 small nucleolar RNA, H/ACA box 56 3.12177
METTL8 methyltransferase like 8 3.12177
GDI1 GDP dissociation inhibitor 1 3.12177
HCFC1 host cell factor C1 3.12177
OPN1MW opsin 1 (cone pigments), medium-wave-sensitive 3.12177
DYNC1I2 dynein, cytoplasmic 1, intermediate chain 2 2.93899
PDK1 pyruvate dehydrogenase kinase, isozyme 1 2.93899
DLX1 distal-less homeobox 1 2.93899
RAPGEF4 Rap guanine nucleotide exchange factor (GEF) 4 2.93899
ACTBL2 actin, beta-like 2 2.93899
MLK7-AS1 MLK7 antisense RNA 1 2.93899
METAP1D methionyl aminopeptidase type 1D (mitochondrial) 2.93899
RAPGEF4-AS1 RAPGEF4 antisense RNA 1 2.93899
SLC25A12 solute carrier family 25 (aspartate/glutamate carrier), member 12 2.93899
CDCA7 cell division cycle associated 7 2.93899
HAT1 histone acetyltransferase 1 2.93899
ITGA6 integrin, alpha 6 2.93899
DLX2 distal-less homeobox 2 2.93899
ZAK sterile alpha motif and leucine zipper containing kinase AZK 2.93899
MIR4524A microRNA 4524a 2.76305
SNORA70 small nucleolar RNA, H/ACA box 70 2.76305
LIMD2 LIM domain containing 2 2.76305
MIR4524B microRNA 4524b 2.76305
STRADA STE20-related kinase adaptor alpha 2.76305
LOC729683 uncharacterized LOC729683 2.76305
TEX2 testis expressed 2 2.64759
KPNA2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) 2.64759
ACE angiotensin I converting enzyme 2.64759
GH1 growth hormone 1 2.64759
SNORD104 small nucleolar RNA, C/D box 104 2.64759
CSHL1 chorionic somatomammotropin hormone-like 1 2.64759
ABCA10 ATP-binding cassette, sub-family A (ABC1), member 10 2.64759
CCDC47 coiled-coil domain containing 47 2.64759
ICAM2 intercellular adhesion molecule 2 2.64759
TACO1 translational activator of mitochondrially encoded cytochrome c oxidase I 2.64759
CREB5 cAMP responsive element binding protein 5 2.64759
MIR3064 microRNA 3064 2.64759
FTSJ3 FtsJ homolog 3 (E. coli) 2.64759
KCNH6 potassium channel, voltage gated eag related subfamily H, member 6 2.64759
ABCA9 ATP-binding cassette, sub-family A (ABC1), member 9 2.64759
DDX42 DEAD (Asp-Glu-Ala-Asp) box helicase 42 2.64759
MILR1 mast cell immunoglobulin-like receptor 1 2.64759
MAP3K3 mitogen-activated protein kinase kinase kinase 3 2.64759
PSMC5 proteasome (prosome, macropain) 26S subunit, ATPase, 5 2.64759
CSH2 chorionic somatomammotropin hormone 2 2.64759
CD79B CD79b molecule, immunoglobulin-associated beta 2.64759
SCN4A sodium channel, voltage gated, type IV alpha subunit 2.64759
POLG2 polymerase (DNA directed), gamma 2, accessory subunit 2.64759
DCAF7 DDB1 and CUL4 associated factor 7 2.64759
SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 2.64759
MIR5047 microRNA 5047 2.64759
TCAM1P testicular cell adhesion molecule 1, pseudogene 2.64759
ABCA6 ATP-binding cassette, sub-family A (ABC1), member 6 2.64759
ABCA5 ATP-binding cassette, sub-family A (ABC1), member 5 2.64759
HOXA-AS3 HOXA cluster antisense RNA 3 2.59653
RPS2P32 ribosomal protein S2 pseudogene 32 2.59653
HOTTIP HOXA distal transcript antisense RNA 2.59653
ABCA8 ATP-binding cassette, sub-family A (ABC1), member 8 2.59653
JAZF1-AS1 JAZF1 antisense RNA 1 2.59653
CACNG1 calcium channel, voltage-dependent, gamma subunit 1 2.59653
MALSU1 mitochondrial assembly of ribosomal large subunit 1 2.59653
STK31 serine/threonine kinase 31 2.59653
PECAM1 platelet/endothelial cell adhesion molecule 1 2.59653
CACNG5 calcium channel, voltage-dependent, gamma subunit 5 2.59653
C17ORF58 chromosome 17 open reading frame 58 2.59653
MIR4315-1 microRNA 4315-1 2.59653
ELMO1 engulfment and cell motility 1 2.59653
SEPT7 septin 7 2.59653
NFE2L3 nuclear factor, erythroid 2-like 3 2.59653
SNORA38B small nucleolar RNA, H/ACA box 38B 2.59653
FAM183B acyloxyacyl hydrolase (neutrophil) 2.59653
LOC541472 uncharacterized LOC541472 2.59653
AMPH amphiphysin 2.59653
FAM221A family with sequence similarity 221, member A 2.59653
AMZ2P1 archaelysin family metallopeptidase 2 pseudogene 1 2.59653
IL6 interleukin 6 2.59653
CACNG4 calcium channel, voltage-dependent, gamma subunit 4 2.59653
NUPL2 nucleoporin like 2 2.59653
MIR196B microRNA 196b 2.59653
FAM126A family with sequence similarity 126, member A 2.59653
CCDC126 coiled-coil domain containing 126 2.59653
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 2.59653
ANLN anillin, actin binding protein 2.59653
HERPUD2 HERPUD family member 2 2.59653
TRA2A transformer 2 alpha homolog (Drosophila) 2.59653
VPS41 vacuolar protein sorting 41 homolog (S. cerevisiae) 2.59653
HOXA4 homeobox A4 2.59653
HOXA1 homeobox A1 2.59653
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2.59653
PSMD12 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 2.59653
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2.59653
HOXA9 homeobox A9 2.59653
GNA13 guanine nucleotide binding protein (G protein), alpha 13 2.59653
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 2.59653
AOAH acyloxyacyl hydrolase (neutrophil) 2.59653
EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 2.59653
HOXA2 homeobox A2 2.59653
HOXA10-HOXA9 HOXA10-HOXA9 readthrough 2.59653
HOXA3 homeobox A3 2.59653
APOH apolipoprotein H (beta-2-glycoprotein I) 2.59653
HOXA7 homeobox A7 2.59653
HOXA6 homeobox A6 2.59653
KIAA0895 KIAA0895 2.59653
HOXA5 homeobox A5 2.59653
HOTAIRM1 HOXA transcript antisense RNA, myeloid-specific 1 2.59653
HOXA11-AS HOXA11 antisense RNA 2.59653
GPNMB glycoprotein (transmembrane) nmb 2.59653
HOXA11 homeobox A11 2.59653
MIR1200 microRNA 1200 2.59653
CEP95 centrosomal protein 95kDa 2.59653
KLHL7 kelch-like family member 7 2.59653
HOXA13 homeobox A13 2.59653
AOAH-IT1 AOAH intronic transcript 1 2.59653
BPTF bromodomain PHD finger transcription factor 2.59653
CLK2P1 CDC-like kinase 2, pseudogene 1 2.59653
EVX1 even-skipped homeobox 1 2.59653
NOL11 nucleolar protein 11 2.59653
HOXA10 homeobox A10 2.59653
CBX3 chromobox homolog 3 2.59653
TOMM7 translocase of outer mitochondrial membrane 7 homolog (yeast) 2.59653
SNORD93 small nucleolar RNA, C/D box 93 2.59653
BMPER BMP binding endothelial regulator 2.49065
C7ORF71 chromosome 7 open reading frame 71 2.49065
SKAP2 src kinase associated phosphoprotein 2 2.49065
PRKCA protein kinase C, alpha 2.49065
NPSR1 neuropeptide S receptor 1 2.49065
LOC401324 uncharacterized LOC401324 2.49065
NPSR1-AS1 NPSR1 antisense RNA 1 2.49065
HELZ helicase with zinc finger 2.49065
HIBADH 3-hydroxyisobutyrate dehydrogenase 2.49065
TBX20 T-box 20 2.49065
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 2.49065
LOC146880 Rho GTPase activating protein 27 pseudogene 2.49065
SNX10 sorting nexin 10 2.49065
DPY19L2P1 DPY19L2 pseudogene 1 2.49065
DPY19L1 dpy-19-like 1 (C. elegans) 2.49065
RGS9 regulator of G-protein signaling 9 2.49065
MIR634 microRNA 634 2.49065
PLEKHM1P pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene 2.49065
POU6F2-AS1 POU6F2 antisense RNA 1 2.49065
KIAA0087 KIAA0087 2.49065
LOC441204 uncharacterized LOC441204 2.49065
CYB561 cytochrome b561 2.49065
CEP112 centrosomal protein 112kDa 2.44392
KANSL1 KAT8 regulatory NSL complex subunit 1 2.44392
RALA v-ral simian leukemia viral oncogene homolog A (ras related) 2.44392
LOC646999 akirin 1 pseudogene 2.44392
MPLKIP M-phase specific PLK1 interacting protein 2.44392
TBC1D3P2 TBC1 domain family, member 3 pseudogene 2 2.44392
EFCAB3 EF-hand calcium binding domain 3 2.44392
POU6F2 POU class 6 homeobox 2 2.44392
YAE1D1 Yae1 domain containing 1 2.44392
METTL2A methyltransferase like 2A 2.44392
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 2.44392
KANSL1-AS1 KANSL1 antisense RNA 1 2.44392
CDK13 cyclin-dependent kinase 13 2.44392
MRC2 mannose receptor, C type 2 2.44392
TLK2 tousled-like kinase 2 2.44392
RP9P retinitis pigmentosa 9 pseudogene 2.44392
ITGB8 integrin, beta 8 2.44392
JAZF1 JAZF zinc finger 1 2.44392
MARCH10 membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase 2.41451
KBTBD2 kelch repeat and BTB (POZ) domain containing 2 2.41451
TMEM196 transmembrane protein 196 2.41451
ZNRF2P1 zinc and ring finger 2 pseudogene 1 2.41451
MIR3146 microRNA 3146 2.41451
MACC1 metastasis associated in colon cancer 1 2.41451
MACC1-AS1 MACC1 antisense RNA 1 2.41451
MIR550A2 microRNA 550a-2 2.41451
DPY19L1P2 DPY19L1 pseudogene 2 2.41451
TWISTNB TWIST neighbor 2.41451
INTS2 integrator complex subunit 2 2.41451
MIR550B2 microRNA 550b-2 2.41451
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 2.39327
MED13 mediator complex subunit 13 2.39327
TBX2 T-box 2 2.39327
FERD3L Fer3-like bHLH transcription factor 2.39327
TWIST1 twist family bHLH transcription factor 1 2.39327
TBX4 T-box 4 2.39327
NACA2 nascent polypeptide-associated complex alpha subunit 2 2.39327
C17ORF82 chromosome 17 open reading frame 82 2.39327
BRIP1 BRCA1 interacting protein C-terminal helicase 1 2.35236
PPM1D protein phosphatase, Mg2+/Mn2+ dependent, 1D 2.35236
PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 2.35236
SNX13 sorting nexin 13 2.35236
C17ORF64 chromosome 17 open reading frame 64 2.35236
APPBP2 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 2.35236
HDAC9 histone deacetylase 9 2.35236
USP32 ubiquitin specific peptidase 32 2.3178
BCAS3 breast carcinoma amplified sequence 3 2.3178
NDUFA4 NDUFA4, mitochondrial complex associated 2.30944
PHF14 PHD finger protein 14 2.30944
AHR aryl hydrocarbon receptor 2.30944
ETV1 ets variant 1 2.26395
ARL4A ADP-ribosylation factor-like 4A 2.26395
AGR2 anterior gradient 2 2.26395
AGR3 anterior gradient 3 2.26395
SCIN scinderin 2.26395
TSPAN13 tetraspanin 13 2.26395
ISPD isoprenoid synthase domain containing 2.26395
MEOX2 mesenchyme homeobox 2 2.25904
TMEM106B transmembrane protein 106B 2.25904
VWDE von Willebrand factor D and EGF domains 2.25904
ANKMY2 ankyrin repeat and MYND domain containing 2 2.25904
SOSTDC1 sclerostin domain containing 1 2.25904
LRRC72 leucine rich repeat containing 72 2.25904
AGMO alkylglycerol monooxygenase 2.25904
THSD7A thrombospondin, type I, domain containing 7A 2.24845
DGKB diacylglycerol kinase, beta 90kDa 2.24139
ZDHHC11 zinc finger, DHHC-type containing 11 2.20309
LRP1B low density lipoprotein receptor-related protein 1B 2.14731
LSAMP limbic system-associated membrane protein 2.14731
MIR1184-3 microRNA 1184-3 2.14311
H2AFB3 H2A histone family, member B3 2.14311
TKTL1 transketolase-like 1 2.14311
F8A1 coagulation factor VIII-associated 1 2.14311
FLNA filamin A, alpha 2.14311
EMD emerin 2.14311
MAP3K1 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase 2.14116
BRCC3 BRCA1/BRCA2-containing complex, subunit 3 2.14116
CLIC2 chloride intracellular channel 2 2.14116
MIER3 mesoderm induction early response 1, family member 3 2.14116
TMLHE-AS1 TMLHE antisense RNA 1 2.14116
SETD9 SET domain containing 9 2.14116
F8 coagulation factor VIII, procoagulant component 2.14116
FAM3A family with sequence similarity 3, member A 2.14116
CMC4 C-x(9)-C motif containing 4 2.14116
FUNDC2 FUN14 domain containing 2 2.14116
TMLHE trimethyllysine hydroxylase, epsilon 2.14116
MTCP1 mature T-cell proliferation 1 2.14116
G6PD glucose-6-phosphate dehydrogenase 2.14116
SPRY3 sprouty homolog 3 (Drosophila) 2.12931
VAMP7 vesicle-associated membrane protein 7 2.12931
ZBTB20 zinc finger and BTB domain containing 20 2.12703
GPBP1 GC-rich promoter binding protein 1 2.12703
LINC00161 long intergenic non-protein coding RNA 161 2.12225
FAM20A family with sequence similarity 20, member A 2.10992
GH2 growth hormone 2 2.10992
ERN1 endoplasmic reticulum to nucleus signaling 1 2.10992
CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) 2.10992
MIR635 microRNA 635 2.10992
WIPI1 WD repeat domain, phosphoinositide interacting 1 2.10992
AMZ2 archaelysin family metallopeptidase 2 2.10992
ARSG arylsulfatase G 2.10992
LOC440461 Rho GTPase activating protein 27 pseudogene 2.10992
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha 2.10992
LINC00674 long intergenic non-protein coding RNA 674 2.10992
SLC16A6 solute carrier family 16, member 6 2.10992
LRRC37A3 leucine rich repeat containing 37, member A3 2.10597
KLHL7-AS1 KLHL7 antisense RNA 1 (head to head) 2.10038
AXIN2 axin 2 2.09431
LINC00265 long intergenic non-protein coding RNA 265 2.09073
MIR548W microRNA 548w 2.09073
NT5C3A 5'-nucleotidase, cytosolic IIIA 2.08712
RP9 retinitis pigmentosa 9 (autosomal dominant) 2.08712
DPY19L1P1 DPY19L1 pseudogene 1 2.08712
BBS9 Bardet-Biedl syndrome 9 2.08712
FKBP9 FK506 binding protein 9, 63 kDa 2.08712
AVL9 AVL9 homolog (S. cerevisiase) 2.08391
SNORD65 small nucleolar RNA, C/D box 65 2.08391
BZW2 basic leucine zipper and W2 domains 2 2.06473

low copy number

Symbol Name Standardized Value
ARHGAP15 Rho GTPase activating protein 15 -5.12655
VIS1 viral integration site 1 -5.12655
ZEB2-AS1 ZEB2 antisense RNA 1 -5.12655
PABPC1P2 poly(A) binding protein, cytoplasmic 1 pseudogene 2 -5.12655
KYNU kynureninase -5.12655
ZEB2 zinc finger E-box binding homeobox 2 -5.12655
FIGN fidgetin -5.12655
TEX41 testis expressed 41 (non-protein coding) -5.12655
GTDC1 glycosyltransferase-like domain containing 1 -3.83684
ACVR2A activin A receptor, type IIA -3.83684
LOC100144595 uncharacterized LOC100144595 -3.2703
KCNH7 potassium channel, voltage gated eag related subfamily H, member 7 -3.24687
LOC100506124 uncharacterized LOC100506124 -3.24687
TTC21B tetratricopeptide repeat domain 21B -3.24687
GALNT13 polypeptide N-acetylgalactosaminyltransferase 13 -3.12964
SCN2A sodium channel, voltage gated, type II alpha subunit -3.12964
SNORA70F small nucleolar RNA, H/ACA box 70F -3.12964
SCN9A sodium channel, voltage gated, type IX alpha subunit -3.12964
GRB14 growth factor receptor-bound protein 14 -3.12964
SCN3A sodium channel, voltage gated, type III alpha subunit -3.12964
GALNT3 polypeptide N-acetylgalactosaminyltransferase 3 -3.11641
CSRNP3 cysteine-serine-rich nuclear protein 3 -3.11641
SLC38A11 solute carrier family 38, member 11 -3.05881
SCN1A sodium channel, voltage gated, type I alpha subunit -3.05881
COBLL1 cordon-bleu WH2 repeat protein-like 1 -3.05881
FFAR3 free fatty acid receptor 3 -2.76158