SKG-IIIA Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description A immortal human uterine cervix-derived cell line cell that has the characteristics: Cervical carcinoma cell line derived from human. TA-4, CA-4, TPA, placental ALP are positive. Regan isoenzyme producing. p53 normal, p51 mutation (+), HLA-A 2402/.TKG0462(Deposited from Tohoku Univ.). (Cell Line Ontology, CLO_0050923)
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Genes

73 genes with high or low copy number in SKG-IIIA relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
CYP4F11 cytochrome P450, family 4, subfamily F, polypeptide 11 4.51153
OR10H4 olfactory receptor, family 10, subfamily H, member 4 4.51153
CYP4F2 cytochrome P450, family 4, subfamily F, polypeptide 2 4.51153
TPM4 tropomyosin 4 3.12177
LINC00905 long intergenic non-protein coding RNA 905 3.12177
RAB8A RAB8A, member RAS oncogene family 3.12177
LINC00661 long intergenic non-protein coding RNA 661 3.12177
MSI2 musashi RNA-binding protein 2 2.93899
MRPS23 mitochondrial ribosomal protein S23 2.93899
CUEDC1 CUE domain containing 1 2.76305
MIR4736 microRNA 4736 2.64759
DYNLL2 dynein, light chain, LC8-type 2 2.64759
SRSF1 serine/arginine-rich splicing factor 1 2.64759
VEZF1 vascular endothelial zinc finger 1 2.64759
MSX2P1 msh homeobox 2 pseudogene 1 2.59653
LPO lactoperoxidase 2.59653
MKS1 Meckel syndrome, type 1 2.59653
SEPT4 septin 4 2.59653
C17ORF47 chromosome 17 open reading frame 47 2.59653
BZRAP1 benzodiazepine receptor (peripheral) associated protein 1 2.59653
OR4D1 olfactory receptor, family 4, subfamily D, member 1 2.59653
MPO myeloperoxidase 2.59653
MIR142 microRNA 142 2.59653
OR4D2 olfactory receptor, family 4, subfamily D, member 2 2.59653
EPX eosinophil peroxidase 2.59653
MTMR4 myotubularin related protein 4 2.59653
SUPT4H1 suppressor of Ty 4 homolog 1 (S. cerevisiae) 2.59653
TRIM37 tripartite motif containing 37 2.49065
BZRAP1-AS1 BZRAP1 antisense RNA 1 2.49065
TEX14 testis expressed 14 2.44392
PPM1E protein phosphatase, Mg2+/Mn2+ dependent, 1E 2.44392
RAD51C RAD51 paralog C 2.44392
THRSP thyroid hormone responsive 2.36889
NARS2 asparaginyl-tRNA synthetase 2, mitochondrial (putative) 2.36889
NDUFC2 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa 2.36889
USP35 ubiquitin specific peptidase 35 2.36889
ALG8 ALG8, alpha-1,3-glucosyltransferase 2.36889
NDUFC2-KCTD14 NDUFC2-KCTD14 readthrough 2.36889
KCTD14 potassium channel tetramerization domain containing 14 2.36889
KCTD21 potassium channel tetramerization domain containing 21 2.36889
AQP11 aquaporin 11 2.35236
RSF1 remodeling and spacing factor 1 2.35236
AAMDC adipogenesis associated, Mth938 domain containing 2.35236
GAB2 GRB2-associated binding protein 2 2.35236
CLNS1A chloride channel, nucleotide-sensitive, 1A 2.35236
PICALM phosphatidylinositol binding clathrin assembly protein 2.11167
TMEM126A transmembrane protein 126A 2.11167
CREBZF CREB/ATF bZIP transcription factor 2.11167
TMEM126B transmembrane protein 126B 2.10992
CCDC83 coiled-coil domain containing 83 2.10992
SYTL2 synaptotagmin-like 2 2.10992
CCDC89 coiled-coil domain containing 89 2.10992
RNF43 ring finger protein 43 2.10038
HSF5 heat shock transcription factor family member 5 2.10038
CCDC90B coiled-coil domain containing 90B 2.09431
ANKRD42 ankyrin repeat domain 42 2.09431
PCF11 PCF11 cleavage and polyadenylation factor subunit 2.09431
DLG2 discs, large homolog 2 (Drosophila) 2.09161
MIR4300 microRNA 4300 2.09073
SNORA70E small nucleolar RNA, H/ACA box 70E 2.09073
RAB30 RAB30, member RAS oncogene family 2.09073
INTS4 integrator complex subunit 4 2.06537

low copy number

Symbol Name Standardized Value
EOMES eomesodermin -3.24687
CMC1 C-x(9)-C motif containing 1 -3.24687
AZI2 5-azacytidine induced 2 -3.24687
ZCWPW2 zinc finger, CW type with PWWP domain 2 -3.11641
LINC00693 long intergenic non-protein coding RNA 693 -3.05196
GADL1 glutamate decarboxylase-like 1 -3.05196
RBMS3 RNA binding motif, single stranded interacting protein 3 -3.03082
TGFBR2 transforming growth factor, beta receptor II (70/80kDa) -2.99615
ZNF737 zinc finger protein 737 -2.82043
ZNF826P zinc finger protein 826, pseudogene -2.81247
HCG4B HLA complex group 4B (non-protein coding) -2.75184